Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007690

Physical Location & Seq

Genomic Coordinates Reverse (-)

6989543 .. 6991135

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1088800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAATAGCACTGGAAGAAACAGCCGGTTTCCTTTCACTCCAACTCAGTGGCAAGAGCTTGAGCACCAAGCTCTTATCTACAAGTACATGGTTTCTGGAATCTCCATCCCTCCTGATCTCCTCTTCTCCCTCAAAAGAAGCACCTACAACTTGGACTCCCCTCTCCCTCCAAAGCTCTTCTCTCACCACCCTCCTCACATTGGATGGAACTGTTTCCAGATGGGATTAGGGAGAAAAATAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGACGGGAAAAAATGGAGGTGCTCAAAAGAGGCGTTTCCGGATTCGAAATACTGCGAGAAGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTCTGAAAACATCTCAAATTTCAACAACAAACTCATCAGACACTTCAACAATTACCACCAGAATCAACACTTCTTCTGCTTCTCCAAGTCCTGCAGCTTTTCATTCCCTTTCATCATCACTCTCTTCTCTCTCCTCTGATTCCCACGCTTACCCTTTCCTCTATCATCATAACTCACCTTCTCCAAGGCCTACTGGAATCGGATTCCCACATCAAGAGAGAAGCACTACTTCCTTGTTTTTGGACTCTGGTTCTTATCCCCAACCCACCCAGCTCAGATTACAGGTATGCTTATGGGATGAAAGAGGAGGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

230

Amino Acids

25.79

Weight (kDa)

9.65

Isoelectric Point (pI)

63.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	11 - 44	8.6e-15	QLQ
WRC	PF08879	82 - 124	5.2e-21	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06200 AT2G06200 AT2G06200
fragaria_vesca	FvH4_1g08440 FvH4_1g08440
malus_domestica	MD00G1142400.v1.1 MD02G1088700.v1.1 MD02G1088800.v1.1 MD15G1216000.v1.1
prunus_persica	Prupe.7G201000_v2.0.a1
pyrus_communis	pycom02g07120 pycom15g19160
rosa_chinensis	RchiOBHm_Chr2g0094541
rosa_laevigata	RLG00000016500
rosa_multiflora	Rmu_sc0004359.1_g000041
rosa_roxburghii	Rroxscaffold_2G00147080
rosa_rugosa	Rorug02G0044600 Rorug02G0044700 Rorug02G0044800 Rorug02G0044800
rosa_samantha	Rh2AG092900 Rh2BG093100 Rh2CG095600 Rh2DG092000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	390
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	200, 251
AgsI	TTSAA	3 cut(s)	357, 396, 420
AjnI	CCWGG	1 cut(s)	250
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	5 cut(s)	58, 71, 175, 470, 646
AluI	AGCT	5 cut(s)	58, 71, 175, 470, 646
Alw21I	GWGCWC	2 cut(s)	66, 293
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	1 cut(s)	560
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	176, 540
AsuII	TTCGAA	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	66, 293
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	3 cut(s)	113, 198, 214
BciT130I	CCWGG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	557
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 251
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	16, 571
BseAI	TCCGGA	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	3 cut(s)	105, 209, 676
BseLI	CCNNNNNNNGG	2 cut(s)	200, 251
BseMII	CTCAG	2 cut(s)	59, 661
BseNI	ACTGG	2 cut(s)	16, 571
BseRI	GAGGAG	3 cut(s)	110, 183, 496
BseXI	GCAGC	1 cut(s)	479
BseYI	CCCAGC	1 cut(s)	642
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	562
BsiHKAI	GWGCWC	2 cut(s)	66, 293
BsiSI	CCGG	2 cut(s)	25, 308
BslI	CCNNNNNNNGG	2 cut(s)	200, 251
BsnI	GGCC	1 cut(s)	562
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	66, 293
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	562
BspCNI	CTCAG	2 cut(s)	58, 660
BspEI	TCCGGA	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	469
BspQI	GCTCTTC	1 cut(s)	182
BspT104I	TTCGAA	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	16, 571
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	212, 353
Bst6I	CTCTTC	3 cut(s)	128, 182, 502
BstBI	TTCGAA	1 cut(s)	314
BstDEI	CTNAG	2 cut(s)	45, 647
BstF5I	GGATG	3 cut(s)	105, 209, 676
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	479
BstXI	CCANNNNNNTGG	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	562
BtsCI	GGATG	3 cut(s)	105, 209, 676
BtsIMutI	CAGTG	2 cut(s)	9, 53
Cfr10I	RCCGGY	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	88, 334
CviJI	RGCY	9 cut(s)	24, 58, 71, 175, 250, 364, 470, 562, 646
CviKI_1	RGCY	9 cut(s)	24, 58, 71, 175, 250, 364, 470, 562, 646
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	45, 647
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eam1104I	CTCTTC	3 cut(s)	128, 182, 502
EarI	CTCTTC	3 cut(s)	128, 182, 502
Eco130I	CCWWGG	1 cut(s)	557
Eco147I	AGGCCT	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	2 cut(s)	91, 337
FaiI	YATR	5 cut(s)	89, 335, 543, 661, 667
FalI	AAGNNNNNCTT	2 cut(s)	586, 618
FatI	CATG	2 cut(s)	87, 333
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	3 cut(s)	92, 216, 683
Fsp4HI	GCNGC	1 cut(s)	468
GluI	GCNGC	1 cut(s)	468
GsaI	CCCAGC	1 cut(s)	646
HaeIII	GGCC	1 cut(s)	562
HapII	CCGG	2 cut(s)	25, 308
Hin1II	CATG	2 cut(s)	91, 337
HinfI	GANTC	8 cut(s)	99, 155, 311, 435, 512, 570, 576, 617
HpaII	CCGG	2 cut(s)	25, 308
HphI	GGTGA	2 cut(s)	176, 540
Hpy188I	TCNGA	5 cut(s)	378, 412, 511, 575, 650
Hpy188III	TCNNGA	6 cut(s)	96, 113, 217, 308, 357, 587
HpyAV	CCTTC	2 cut(s)	249, 561
HpyCH4III	ACNGT	2 cut(s)	212, 353
HpyCH4V	TGCA	3 cut(s)	261, 337, 467
HpyF3I	CTNAG	2 cut(s)	45, 647
Hsp92II	CATG	2 cut(s)	91, 337
Kpn2I	TCCGGA	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	115
LguI	GCTCTTC	1 cut(s)	182
Lsp1109I	GCAGC	1 cut(s)	479
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	6 cut(s)	27, 115, 169, 276, 438, 489
MhlI	GDGCHC	2 cut(s)	66, 293
MluCI	AATT	2 cut(s)	390, 423
MlyI	GAGTC	2 cut(s)	149, 611
MmeI	TCCRAC	1 cut(s)	65
MroI	TCCGGA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	212
MspI	CCGG	2 cut(s)	25, 308
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	91, 337
NspI	RCATGY	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	6 cut(s)	99, 311, 435, 512, 570, 576
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	2 cut(s)	149, 611
PpsI	GAGTC	2 cut(s)	149, 611
Psp6I	CCWGG	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	469
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	182
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	149, 611
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	2 cut(s)	66, 293
SfcI	CTRYAG	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	390, 423
SseBI	AGGCCT	1 cut(s)	562
StuI	AGGCCT	1 cut(s)	562
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	557
TaaI	ACNGT	2 cut(s)	212, 353
TaqI	TCGA	1 cut(s)	314
TasI	AATT	2 cut(s)	390, 423
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	6 cut(s)	99, 311, 435, 512, 570, 576
TscAI	CASTG	2 cut(s)	16, 53
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	4 cut(s)	17, 464, 474, 687
TspRI	CASTG	2 cut(s)	16, 53
XapI	RAATTY	1 cut(s)	390
XceI	RCATGY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.