Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007690

Physical Location & Seq

Genomic Coordinates Reverse (-)

4473728 .. 4475944

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08440.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGATGAGCAGTAGTAGTGCTGGGAGAGGCATGAGGTTTCCTTTTACTCCATCTCAATGGCAAGAGCTTGAGCACCAAGCTCTGATTTACAAGTACATGGTTTCTGGAATACCTATTCCTCCTGATCTCCTCTTCTCCATCAAAAGAAGCTGCTTGGACTCTCCTCCTCTCTCTTCAAAGCTCTTCTCTCCCCACATTGGGTGGAACTGTTTTCAGATGGGACTGGGGAGGAAGATAGACCCAGAACCAGGAAGGTGCAGAAGAACTGATGGGAAGAAATGGAGGTGTTCAAAAGAAGCATATGCTGATTCTAAGTACTGTGAGAGGCACATGCACAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTCAAAGCAACACTACCAACTTCAGCAAATTCAAACTCTAACTCCAACTCAAACACATCACCAATCACTAAGATTTTCAACCCATCATCCAATTCACTTAGCACACCCTTCCATTCACTATCTTCACTCTCACCCAATGAGAGTAGCTACAATAGTAGTAGCTCTAATCTTGATGATCATCCTTTCCTTTATTCAAGGCCAAACATTGGTTTATCACAGCAAGAAAGAAGCACCTCCTTGTTTTTGGACTCTGCTTCTTACAATAATCCCCTGCATCCTAACTTAGAATACAGGTTTGGTTATGGGGTGAAAGAAGAGGTGGATGAGCATGCATTCTTCTCAGAGCCTTCAGGGAGTGTTAGAGGCTTCTCTGGCTCTTCTTCATCTTTGAATCATCATCAAAATGAATCCAATTGGCAGCTCACAATGAGTTGTTCCGACTCTTCTTCAAAACAGAGGACCTGCTCTGCTTTACAAACAGAGCACTACCCTCACTTGCAGCTTCAGAACTTCACTGACTCCAAACGAGGAGAAGAAACCCAGAGAACCATTCATCACTTCTTTGATGAAGGGCCTCCCAAAGATAGAGAATCATCATGGCTTGATTTGGATGCTAATAATAAATCTTCAAACAGTGGATCAGCTTCCACCACCAGGCTTTCAATCTCTATTCCAAACTCTGCTCATGACTTCCCAATCTACAATTCCAGAAGTCATCATGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

367

Amino Acids

41.17

Weight (kDa)

8.13

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	14 - 47	4e-16	QLQ
WRC	PF08879	81 - 123	3.3e-20	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06200 AT2G06200 AT2G06200
fragaria_vesca	FvH4_1g08440 FvH4_1g08440
malus_domestica	MD00G1142400.v1.1 MD02G1088700.v1.1 MD02G1088800.v1.1 MD15G1216000.v1.1
prunus_persica	Prupe.7G201000_v2.0.a1
pyrus_communis	pycom02g07120 pycom15g19160
rosa_chinensis	RchiOBHm_Chr2g0094541
rosa_laevigata	RLG00000016500
rosa_multiflora	Rmu_sc0004359.1_g000041
rosa_roxburghii	Rroxscaffold_2G00147080
rosa_rugosa	Rorug02G0044600 Rorug02G0044700 Rorug02G0044800 Rorug02G0044800
rosa_samantha	Rh2AG092900 Rh2BG093100 Rh2CG095600 Rh2DG092000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	842
AccB7I	CCANNNNNTGG	1 cut(s)	578
AclWI	GGATC	1 cut(s)	1018
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	3 cut(s)	378, 705, 860
AfaI	GTAC	2 cut(s)	95, 317
AfiI	CCNNNNNNNGG	5 cut(s)	197, 198, 248, 578, 1026
AjnI	CCWGG	2 cut(s)	247, 1025
AjuI	GAANNNNNNNTTGG	4 cut(s)	651, 683, 1060, 1092
AluBI	AGCT	9 cut(s)	67, 80, 150, 181, 519, 534, 793, 874, 1016
AluI	AGCT	9 cut(s)	67, 80, 150, 181, 519, 534, 793, 874, 1016
Alw21I	GWGCWC	2 cut(s)	75, 858
AlwI	GGATC	1 cut(s)	1018
AoxI	GGCC	2 cut(s)	569, 944
ApeKI	GCWGC	3 cut(s)	150, 790, 871
ApoI	RAATTY	1 cut(s)	400
AspS9I	GGNCC	2 cut(s)	831, 944
AsuHPI	GGTGA	3 cut(s)	423, 495, 691
AvaII	GGWCC	1 cut(s)	831
Bbv12I	GWGCWC	2 cut(s)	75, 858
BbvI	GCAGC	3 cut(s)	137, 802, 883
BccI	CCATC	5 cut(s)	58, 146, 211, 263, 463
BciT130I	CCWGG	2 cut(s)	249, 1027
BclI	TGATCA	1 cut(s)	547
BfuAI	ACCTGC	1 cut(s)	842
BisI	GCNGC	3 cut(s)	151, 791, 872
BlsI	GCNGC	3 cut(s)	152, 792, 873
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	249, 1027
Bme18I	GGWCC	1 cut(s)	831
BmgT120I	GGNCC	2 cut(s)	831, 944
BmrFI	CCNGG	2 cut(s)	249, 1027
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	655, 973
BmuI	ACTGGG	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 198, 248, 578, 1026
Bse1I	ACTGG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	249, 1027
BseGI	GGATG	5 cut(s)	458, 550, 646, 700, 988
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	5 cut(s)	197, 198, 248, 578, 1026
BseMII	CTCAG	1 cut(s)	726
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	4 cut(s)	119, 153, 156, 915
BseXI	GCAGC	3 cut(s)	137, 802, 883
BseYI	CCCAGC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	571, 946
BsiHKAI	GWGCWC	2 cut(s)	75, 858
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	5 cut(s)	197, 198, 248, 578, 1026
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	2 cut(s)	571, 946
Bsp1286I	GDGCHC	2 cut(s)	75, 858
Bsp143I	GATC	3 cut(s)	124, 547, 1010
BspANI	GGCC	2 cut(s)	571, 946
BspCNI	CTCAG	1 cut(s)	725
BspHI	TCATGA	2 cut(s)	1057, 1090
BspMI	ACCTGC	1 cut(s)	842
BspPI	GGATC	1 cut(s)	1018
BspQI	GCTCTTC	2 cut(s)	188, 754
BsrI	ACTGG	1 cut(s)	228
BssMI	GATC	3 cut(s)	124, 547, 1010
Bst2UI	CCWGG	2 cut(s)	249, 1027
Bst4CI	ACNGT	4 cut(s)	209, 320, 350, 1007
Bst6I	CTCTTC	6 cut(s)	137, 178, 188, 681, 754, 820
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	5 cut(s)	312, 441, 470, 655, 712
BstF5I	GGATG	5 cut(s)	458, 550, 646, 700, 988
BstKTI	GATC	3 cut(s)	127, 550, 1013
BstMBI	GATC	3 cut(s)	124, 547, 1010
BstMWI	GCNNNNNNNGC	1 cut(s)	744
BstNI	CCWGG	2 cut(s)	249, 1027
BstNSI	RCATGY	2 cut(s)	334, 704
BstSCI	CCNGG	2 cut(s)	247, 1025
BstV1I	GCAGC	3 cut(s)	137, 802, 883
BstXI	CCANNNNNNTGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	571, 946
BtsCI	GGATG	5 cut(s)	458, 550, 646, 700, 988
BtsIMutI	CAGTG	2 cut(s)	885, 1012
BveI	ACCTGC	1 cut(s)	842
Cac8I	GCNNGC	1 cut(s)	702
CciI	TCATGA	2 cut(s)	1057, 1090
Cfr13I	GGNCC	2 cut(s)	831, 944
Csp6I	GTAC	2 cut(s)	94, 316
CviAII	CATG	7 cut(s)	31, 97, 331, 701, 969, 1058, 1091
CviQI	GTAC	2 cut(s)	94, 316
DdeI	CTNAG	5 cut(s)	312, 441, 470, 655, 712
DpnI	GATC	3 cut(s)	126, 549, 1012
DpnII	GATC	3 cut(s)	124, 547, 1010
Eam1104I	CTCTTC	6 cut(s)	137, 178, 188, 681, 754, 820
EarI	CTCTTC	6 cut(s)	137, 178, 188, 681, 754, 820
Eco47I	GGWCC	1 cut(s)	831
Eco57I	CTGAAG	3 cut(s)	378, 705, 860
EcoO109I	RGGNCCY	2 cut(s)	831, 944
EcoRII	CCWGG	2 cut(s)	247, 1025
EcoT22I	ATGCAT	1 cut(s)	706
FaeI	CATG	7 cut(s)	34, 100, 334, 704, 972, 1061, 1094
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	7 cut(s)	30, 96, 330, 700, 968, 1057, 1090
FauNDI	CATATG	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	3 cut(s)	151, 791, 872
FokI	GGATG	5 cut(s)	445, 537, 633, 707, 995
Fsp4HI	GCNGC	3 cut(s)	151, 791, 872
GluI	GCNGC	3 cut(s)	151, 791, 872
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	571, 946
Hin1II	CATG	7 cut(s)	34, 100, 334, 704, 972, 1061, 1094
HinfI	GANTC	8 cut(s)	158, 308, 620, 763, 779, 812, 890, 962
HphI	GGTGA	3 cut(s)	423, 495, 691
Hpy188I	TCNGA	5 cut(s)	84, 216, 715, 811, 879
Hpy188III	TCNNGA	7 cut(s)	105, 122, 354, 542, 1058, 1080, 1091
HpyAV	CCTTC	4 cut(s)	246, 490, 729, 935
HpyCH4III	ACNGT	4 cut(s)	209, 320, 350, 1007
HpyCH4V	TGCA	5 cut(s)	258, 334, 646, 704, 871
HpyF10VI	GCNNNNNNNGC	1 cut(s)	744
HpyF3I	CTNAG	5 cut(s)	312, 441, 470, 655, 712
Hsp92II	CATG	7 cut(s)	34, 100, 334, 704, 972, 1061, 1094
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	3 cut(s)	124, 547, 1010
LguI	GCTCTTC	2 cut(s)	188, 754
Lsp1109I	GCAGC	3 cut(s)	137, 802, 883
LweI	GCATC	2 cut(s)	655, 973
MalI	GATC	3 cut(s)	126, 549, 1012
MboI	GATC	3 cut(s)	124, 547, 1010
MfeI	CAATTG	1 cut(s)	784
MhlI	GDGCHC	2 cut(s)	75, 858
MluCI	AATT	4 cut(s)	400, 463, 784, 1075
MlyI	GAGTC	4 cut(s)	152, 614, 806, 884
MmeI	TCCRAC	2 cut(s)	441, 834
Mph1103I	ATGCAT	1 cut(s)	706
MslI	CAYNNNNRTG	3 cut(s)	55, 774, 1092
MspR9I	CCNGG	2 cut(s)	249, 1027
MunI	CAATTG	1 cut(s)	784
Mva1269I	GAATGC	1 cut(s)	704
MvaI	CCWGG	2 cut(s)	249, 1027
MwoI	GCNNNNNNNGC	1 cut(s)	744
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	3 cut(s)	124, 547, 1010
NlaIII	CATG	7 cut(s)	34, 100, 334, 704, 972, 1061, 1094
NsiI	ATGCAT	1 cut(s)	706
NspI	RCATGY	2 cut(s)	334, 704
PaeI	GCATGC	1 cut(s)	704
PagI	TCATGA	2 cut(s)	1057, 1090
PciSI	GCTCTTC	2 cut(s)	188, 754
PctI	GAATGC	1 cut(s)	704
PfeI	GAWTC	4 cut(s)	308, 763, 779, 962
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	3 cut(s)	152, 792, 873
PleI	GAGTC	4 cut(s)	152, 614, 806, 884
PpsI	GAGTC	4 cut(s)	152, 614, 806, 884
PpuMI	RGGWCCY	1 cut(s)	831
Psp5II	RGGWCCY	1 cut(s)	831
Psp6I	CCWGG	2 cut(s)	247, 1025
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	247, 1025
PspPI	GGNCC	2 cut(s)	831, 944
PspPPI	RGGWCCY	1 cut(s)	831
RsaI	GTAC	2 cut(s)	95, 317
RsaNI	GTAC	2 cut(s)	94, 316
RseI	CAYNNNNRTG	3 cut(s)	55, 774, 1092
SapI	GCTCTTC	2 cut(s)	188, 754
SatI	GCNGC	3 cut(s)	151, 791, 872
Sau3AI	GATC	3 cut(s)	124, 547, 1010
Sau96I	GGNCC	2 cut(s)	831, 944
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	4 cut(s)	152, 614, 806, 884
ScrFI	CCNGG	2 cut(s)	249, 1027
SduI	GDGCHC	2 cut(s)	75, 858
SfaNI	GCATC	2 cut(s)	655, 973
SinI	GGWCC	1 cut(s)	831
SmiMI	CAYNNNNRTG	3 cut(s)	55, 774, 1092
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	704
Sse9I	AATT	4 cut(s)	400, 463, 784, 1075
StyD4I	CCNGG	2 cut(s)	247, 1025
TaaI	ACNGT	4 cut(s)	209, 320, 350, 1007
TasI	AATT	4 cut(s)	400, 463, 784, 1075
TatI	WGTACW	2 cut(s)	93, 315
TfiI	GAWTC	4 cut(s)	308, 763, 779, 962
TscAI	CASTG	2 cut(s)	892, 1012
TseI	GCWGC	3 cut(s)	150, 790, 871
TspDTI	ATGAA	4 cut(s)	744, 792, 914, 954
TspRI	CASTG	2 cut(s)	892, 1012
Van91I	CCANNNNNTGG	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	831
XapI	RAATTY	1 cut(s)	400
XceI	RCATGY	2 cut(s)	334, 704
ZrmI	AGTACT	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.