AT2G06520

Photosystem II reaction centre X protein (PsbX)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005636
Physical Location & Seq
Reverse (-)
2587729 .. 2588448
720 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G06520.1

Sequence Viewer

Length: 351 bp
ATGGCTTCTACCTCCGCGATGTCATTGGTCACACCACTTAACCAGACCCGTTCGTCTCCTTTCCTTAAGCCATTACCTCTGAAACCATCCAAGGCTTTGGTTGCAACTGGAGGCAGAGCACAGAGGCTTCAAGTTAAGGCCCTCAAGATGGACAAGGCTTTGACCGGTATCTCCGCGGCTGCTCTTACTGCTTCGATGGTGATTCCGGAGATAGCTGAAGCTGCTGGTTCTGGAATCTCTCCTTCCCTCAAGAATTTCTTGCTCAGCATTGCTTCTGGTGGCCTCGTCCTCACTGTCATCATTGGTGTCGTCGTCGGCGTCTCCAACTTTGACCCTGTCAAGAGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbX

Protein Analysis

116

Amino Acids

11.81

Weight (kDa)

10.75

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbX PF06596 79 - 115 2.4e-14 Photosystem II reaction centre X protein (PsbX)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccII CGCG 2 cut(s) 17, 176
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 3 cut(s) 15, 174, 176
AcsI RAATTY 1 cut(s) 253
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 148
AflII CTTAAG 1 cut(s) 65
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 2 cut(s) 215, 221
AluI AGCT 2 cut(s) 215, 221
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 2 cut(s) 60, 325
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 2 cut(s) 138, 280
ApeKI GCWGC 2 cut(s) 179, 221
ApoI RAATTY 1 cut(s) 253
AsiGI ACCGGT 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 166, 208
BccI CCATC 3 cut(s) 94, 142, 190
BcoDI GTCTC 2 cut(s) 60, 325
BfrI CTTAAG 1 cut(s) 65
BisI GCNGC 3 cut(s) 177, 180, 222
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 3 cut(s) 178, 181, 223
BmgT120I GGNCC 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 2 cut(s) 128, 233
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 90, 174
BsaWI WCCGGW 2 cut(s) 164, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 90, 174
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 277
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 2 cut(s) 166, 208
Bsh1236I CGCG 2 cut(s) 17, 176
BshFI GGCC 2 cut(s) 140, 282
BshTI ACCGGT 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 121
BsiSI CCGG 2 cut(s) 165, 206
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 60, 325
BsmBI CGTCTC 2 cut(s) 60, 325
BsnI GGCC 2 cut(s) 140, 282
Bsp1286I GDGCHC 1 cut(s) 121
Bsp13I TCCGGA 1 cut(s) 205
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 3 cut(s) 15, 174, 176
BspANI GGCC 2 cut(s) 140, 282
BspCNI CTCAG 1 cut(s) 276
BspEI TCCGGA 1 cut(s) 205
BspFNI CGCG 2 cut(s) 17, 176
BspTI CTTAAG 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 90, 174
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 295
BstACI GRCGYC 1 cut(s) 318
BstAFI CTTAAG 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 17, 176
BstMAI GTCTC 2 cut(s) 60, 325
BstMWI GCNNNNNNNGC 3 cut(s) 101, 188, 221
BstUI CGCG 2 cut(s) 17, 176
BstV1I GCAGC 2 cut(s) 166, 208
BstXI CCANNNNNNTGG 1 cut(s) 97
BsuRI GGCC 2 cut(s) 140, 282
BtgI CCRYGG 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 139
Cfr42I CCGCGG 1 cut(s) 177
CseI GACGC 1 cut(s) 307
CspAI ACCGGT 1 cut(s) 164
DdeI CTNAG 1 cut(s) 263
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
Esp3I CGTCTC 2 cut(s) 60, 325
FalI AAGNNNNNCTT 2 cut(s) 242, 274
Fnu4HI GCNGC 3 cut(s) 177, 180, 222
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 3 cut(s) 177, 180, 222
GluI GCNGC 3 cut(s) 177, 180, 222
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 2 cut(s) 140, 282
HapII CCGG 2 cut(s) 165, 206
HgaI GACGC 1 cut(s) 307
Hin1I GRCGYC 1 cut(s) 318
HinfI GANTC 2 cut(s) 202, 234
HpaII CCGG 2 cut(s) 165, 206
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 5 cut(s) 145, 206, 231, 250, 340
Hpy99I CGWCG 2 cut(s) 314, 317
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 188, 221
HpyF3I CTNAG 1 cut(s) 263
Hsp92I GRCGYC 1 cut(s) 318
Kpn2I TCCGGA 1 cut(s) 205
KspI CCGCGG 1 cut(s) 177
LpnPI CCDG 7 cut(s) 56, 93, 178, 210, 216, 219, 261
Lsp1109I GCAGC 2 cut(s) 166, 208
MaeIII GTNAC 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 8 cut(s) 22, 87, 104, 117, 152, 257, 293, 299
MroI TCCGGA 1 cut(s) 205
MseI TTAA 3 cut(s) 39, 66, 135
MspA1I CMGCKG 1 cut(s) 176
MspCI CTTAAG 1 cut(s) 65
MspI CCGG 2 cut(s) 165, 206
MvnI CGCG 2 cut(s) 17, 176
MwoI GCNNNNNNNGC 3 cut(s) 101, 188, 221
NmuCI GTSAC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 2 cut(s) 202, 234
PflFI GACNNNGTC 1 cut(s) 335
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 3 cut(s) 178, 181, 223
PspPI GGNCC 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 335
SacII CCGCGG 1 cut(s) 177
SaqAI TTAA 3 cut(s) 39, 66, 135
SatI GCNGC 3 cut(s) 177, 180, 222
Sau96I GGNCC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 121
SetI ASST 5 cut(s) 14, 79, 217, 223, 350
Sfr303I CCGCGG 1 cut(s) 177
SgrBI CCGCGG 1 cut(s) 177
SmlI CTYRAG 3 cut(s) 65, 143, 248
SmoI CTYRAG 3 cut(s) 65, 143, 248
Sse9I AATT 1 cut(s) 253
SsiI CCGC 3 cut(s) 15, 174, 176
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 253
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 2 cut(s) 202, 234
Tru1I TTAA 3 cut(s) 39, 66, 135
Tru9I TTAA 3 cut(s) 39, 66, 135
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 179, 221
Tsp45I GTSAC 1 cut(s) 28
TspRI CASTG 1 cut(s) 298
Tth111I GACNNNGTC 1 cut(s) 335
Vha464I CTTAAG 1 cut(s) 65
XapI RAATTY 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.