Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000229.1

Orthogroup ID

OG0005636

Physical Location & Seq

Genomic Coordinates Forward (+)

35 .. 406

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000229.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggcttcaagctcagcagttacaatggctatgccattgcccaatgccaccacccaaaagagggtggttcaatcctcagaggccttctacaagccactacccctcaggccctcgaaggctgtgtcctcgccatcaagatcaagtggaagacttgaggtcagggcttccctgaaggagaaggccgtcaccgcaatcaccgccgccgcgctcacggcctcaatggtggtcccggacgtggcggaagccgcatctggagtctctccgtcgctcaagaacttcttactcagcattgctgccggcggcactgtacttattgtgattattggagctgtaatcggagtgtccaatttcgaccctgtcaagaggggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbX

Protein Analysis

123

Amino Acids

12.52

Weight (kDa)

10.43

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06520
fragaria_vesca	FvH4_1g08270 FvH4_2g31210
malus_domestica	MD02G1087100.v1.1 MD08G1070100.v1.1 MD15G1214700.v1.1
prunus_persica	Prupe.1G406000_v2.0.a1 Prupe.7G202600_v2.0.a1
pyrus_communis	pycom15g04980
rosa_chinensis	RchiOBHm_Chr2g0094341 RchiOBHm_Chr6g0311601
rosa_laevigata	RLG00000010388 RLG00000016481
rosa_multiflora	Rmu_sc0002888.1_g000004 Rmu_sc0015881.1_g000006 Rmu_ssc0000229.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147220 Rroxscaffold_7G00157450
rosa_rugosa	Rorug02G0043400 Rorug06G0390000
rosa_samantha	Rh2BG091100 Rh2CG093700 Rh2DG090100 Rh6AG505200 Rh6BG516100 Rh6CG521900 Rh6DG507800
rosa_wichuraiana	Rw6G043970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	206
AciI	CCGC	7 cut(s)	189, 198, 201, 204, 239, 246, 300
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	3 cut(s)	60, 61, 235
AgsI	TTSAA	2 cut(s)	9, 71
AhdI	GACNNNNNGTC	1 cut(s)	155
AjiI	CACGTC	1 cut(s)	235
AluBI	AGCT	2 cut(s)	12, 329
AluI	AGCT	2 cut(s)	12, 329
Alw26I	GTCTC	1 cut(s)	262
AoxI	GGCC	4 cut(s)	81, 107, 180, 213
ApeKI	GCWGC	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	108, 226
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	178, 187
AvaII	GGWCC	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	2 cut(s)	167, 228
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	262
BisI	GCNGC	5 cut(s)	201, 204, 246, 294, 301
BlpI	GCTNAGC	1 cut(s)	13
BlsI	GCNGC	5 cut(s)	202, 205, 247, 295, 302
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	226
BmeRI	GACNNNNNGTC	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	108, 226
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	13
BpuEI	CTTGAG	2 cut(s)	173, 254
BpuMI	CCSGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 61, 235
Bse118I	RCCGGY	1 cut(s)	296
Bse21I	CCTNAGG	1 cut(s)	104
Bse3DI	GCAATG	2 cut(s)	35, 288
BseLI	CCNNNNNNNGG	3 cut(s)	60, 61, 235
BseMI	GCAATG	2 cut(s)	35, 288
BseMII	CTCAG	4 cut(s)	27, 90, 118, 298
BseXI	GCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	4 cut(s)	83, 109, 182, 215
BsiSI	CCGG	2 cut(s)	230, 297
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	60, 61, 235
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	83, 109, 182, 215
Bsp143I	GATC	1 cut(s)	137
Bsp1720I	GCTNAGC	1 cut(s)	13
BspACI	CCGC	7 cut(s)	189, 198, 201, 204, 239, 246, 300
BspANI	GGCC	4 cut(s)	83, 109, 182, 215
BspCNI	CTCAG	4 cut(s)	26, 89, 117, 297
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	228
BsrDI	GCAATG	2 cut(s)	35, 288
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssMI	GATC	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	4 cut(s)	13, 76, 104, 284
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	140
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 197, 212, 245
BstSCI	CCNGG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	154
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	4 cut(s)	83, 109, 182, 215
BtrI	CACGTC	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	298
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	108, 226
Csp6I	GTAC	1 cut(s)	308
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	4 cut(s)	13, 76, 104, 284
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
DriI	GACNNNNNGTC	1 cut(s)	155
Eam1105I	GACNNNNNGTC	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	254
Eco147I	AGGCCT	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	108
FaiI	YATR	1 cut(s)	32
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	212
Fnu4HI	GCNGC	5 cut(s)	201, 204, 246, 294, 301
Fsp4HI	GCNGC	5 cut(s)	201, 204, 246, 294, 301
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	5 cut(s)	201, 204, 246, 294, 301
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	4 cut(s)	83, 109, 182, 215
HapII	CCGG	2 cut(s)	230, 297
HhaI	GCGC	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	255
HpaII	CCGG	2 cut(s)	230, 297
HphI	GGTGA	2 cut(s)	178, 187
Hpy188I	TCNGA	2 cut(s)	79, 338
Hpy188III	TCNNGA	4 cut(s)	135, 252, 271, 361
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	4 cut(s)	94, 109, 166, 172
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 197, 212, 245
HpyF3I	CTNAG	4 cut(s)	13, 76, 104, 284
HpySE526I	ACGT	1 cut(s)	234
HspAI	GCGC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	6 cut(s)	91, 145, 182, 237, 243, 310
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	257
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	19, 184
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	1 cut(s)	159
MluCI	AATT	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	9 cut(s)	54, 73, 85, 113, 121, 136, 148, 226, 357
MroNI	GCCGGC	1 cut(s)	296
MspI	CCGG	2 cut(s)	230, 297
MspR9I	CCNGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	188, 197, 212, 245
NaeI	GCCGGC	1 cut(s)	298
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	137
NgoMIV	GCCGGC	1 cut(s)	296
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	83
PdiI	GCCGGC	1 cut(s)	298
PflFI	GACNNNGTC	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	5 cut(s)	202, 205, 247, 295, 302
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	108, 226
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SatI	GCNGC	5 cut(s)	201, 204, 246, 294, 301
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	2 cut(s)	108, 226
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	4 cut(s)	14, 159, 237, 331
SfaNI	GCATC	1 cut(s)	257
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	2 cut(s)	152, 269
SmoI	CTYRAG	2 cut(s)	152, 269
Sse9I	AATT	1 cut(s)	346
SseBI	AGGCCT	1 cut(s)	83
SsiI	CCGC	7 cut(s)	189, 198, 201, 204, 239, 246, 300
StuI	AGGCCT	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	113, 351
TasI	AATT	1 cut(s)	346
TatI	WGTACW	1 cut(s)	307
TauI	GCSGC	4 cut(s)	203, 206, 248, 303
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	184
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.