Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005636

Physical Location & Seq

Genomic Coordinates Reverse (-)

35675909 .. 35676356

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G406000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTTCTGCTTCAATGGCTATCCCACTGATGTCTGCCACCCAAAACGGACTAAACCAGTCTAACTCTGCATCACTGTTCAAATCAGTCCCAGTCAGGCCATCAAAGAAGGCTGCTTTTGTGAAGCCAAAGTCCAAAGGCATGCTTAAGGTGGAGGCATCTTTCAAAGAAAAGGCAGTGACAGGCTTAACAGCAGCTGCATTAACAGCCTCCATGGTGATACCTGAGGTGGCTGAGGCTGCAGGCTCTGGCCTCACACCCTCTCTCAACAACTTTTTGCTTAGCATTGCTGCTGGTGGAGTTGTGCTTACAGCCATTATAGGAGCTGTTGTTGGGGTCTCTAACTTCGACCCAGTTAAGAGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbX

Protein Analysis

123

Amino Acids

12.3

Weight (kDa)

10.17

Isoelectric Point (pI)

20.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06520
fragaria_vesca	FvH4_1g08270 FvH4_2g31210
malus_domestica	MD02G1087100.v1.1 MD08G1070100.v1.1 MD15G1214700.v1.1
prunus_persica	Prupe.1G406000_v2.0.a1 Prupe.7G202600_v2.0.a1
pyrus_communis	pycom15g04980
rosa_chinensis	RchiOBHm_Chr2g0094341 RchiOBHm_Chr6g0311601
rosa_laevigata	RLG00000010388 RLG00000016481
rosa_multiflora	Rmu_sc0002888.1_g000004 Rmu_sc0015881.1_g000006 Rmu_ssc0000229.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147220 Rroxscaffold_7G00157450
rosa_rugosa	Rorug02G0043400 Rorug06G0390000
rosa_samantha	Rh2BG091100 Rh2CG093700 Rh2DG090100 Rh6AG505200 Rh6BG516100 Rh6CG521900 Rh6DG507800
rosa_wichuraiana	Rw6G043970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	15, 82, 166
AluBI	AGCT	2 cut(s)	197, 326
AluI	AGCT	2 cut(s)	197, 326
Alw26I	GTCTC	1 cut(s)	343
AlwNI	CAGNNNCTG	2 cut(s)	197, 248
AoxI	GGCC	2 cut(s)	98, 250
ApeKI	GCWGC	5 cut(s)	113, 194, 197, 239, 290
AsuHPI	GGTGA	1 cut(s)	229
AxyI	CCTNAGG	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	5 cut(s)	100, 184, 206, 226, 277
BccI	CCATC	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	343
BfmI	CTRYAG	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	5 cut(s)	114, 195, 198, 240, 291
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	5 cut(s)	115, 196, 199, 241, 292
BmrI	ACTGGG	2 cut(s)	86, 347
BmsI	GCATC	2 cut(s)	80, 167
BmuI	ACTGGG	2 cut(s)	86, 347
Bpu10I	CCTNAGC	1 cut(s)	234
Bpu1102I	GCTNAGC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bse1I	ACTGG	3 cut(s)	58, 92, 353
Bse21I	CCTNAGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	216, 225
BseNI	ACTGG	3 cut(s)	58, 92, 353
BseXI	GCAGC	5 cut(s)	100, 184, 206, 226, 277
BshFI	GGCC	2 cut(s)	100, 252
BslFI	GGGAC	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	100, 252
Bso31I	GGTCTC	1 cut(s)	343
Bsp1720I	GCTNAGC	1 cut(s)	281
Bsp19I	CCATGG	1 cut(s)	213
BspANI	GGCC	2 cut(s)	100, 252
BspCNI	CTCAG	2 cut(s)	217, 226
BspMAI	CTGCAG	1 cut(s)	244
BspTI	CTTAAG	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	58, 92, 353
BssECI	CCNNGG	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	143, 244
BstDEI	CTNAG	3 cut(s)	225, 234, 281
BstDSI	CCRYGG	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 206, 239
BstNSI	RCATGY	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	5 cut(s)	100, 184, 206, 226, 277
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	100, 252
BtgI	CCRYGG	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	3 cut(s)	26, 74, 183
Cac8I	GCNNGC	2 cut(s)	143, 244
CaiI	CAGNNNCTG	2 cut(s)	197, 248
CviAII	CATG	2 cut(s)	142, 214
DdeI	CTNAG	3 cut(s)	225, 234, 281
Eco130I	CCWWGG	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	343
Eco81I	CCTNAGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	145, 217
FaiI	YATR	3 cut(s)	143, 215, 320
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	2 cut(s)	141, 213
Fnu4HI	GCNGC	5 cut(s)	114, 195, 198, 240, 291
Fsp4HI	GCNGC	5 cut(s)	114, 195, 198, 240, 291
GluI	GCNGC	5 cut(s)	114, 195, 198, 240, 291
HaeIII	GGCC	2 cut(s)	100, 252
Hin1II	CATG	2 cut(s)	145, 217
HphI	GGTGA	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	71, 200, 242
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 206, 239
HpyF3I	CTNAG	3 cut(s)	225, 234, 281
Hsp92II	CATG	2 cut(s)	145, 217
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	8 cut(s)	71, 82, 105, 168, 228, 234, 237, 279
Lsp1109I	GCAGC	5 cut(s)	100, 184, 206, 226, 277
LweI	GCATC	2 cut(s)	80, 167
MaeIII	GTNAC	1 cut(s)	178
MnlI	CCTC	6 cut(s)	148, 220, 220, 229, 263, 271
MseI	TTAA	4 cut(s)	147, 188, 203, 357
MspA1I	CMGCKG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	17, 206, 239
NcoI	CCATGG	1 cut(s)	213
NlaIII	CATG	2 cut(s)	145, 217
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	145
PaeI	GCATGC	1 cut(s)	145
PkrI	GCNGC	5 cut(s)	115, 196, 199, 241, 292
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	2 cut(s)	197, 248
PvuII	CAGCTG	1 cut(s)	197
SaqAI	TTAA	4 cut(s)	147, 188, 203, 357
SatI	GCNGC	5 cut(s)	114, 195, 198, 240, 291
SetI	ASST	6 cut(s)	153, 199, 226, 231, 328, 368
SfaNI	GCATC	2 cut(s)	80, 167
SfcI	CTRYAG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	348
Tru1I	TTAA	4 cut(s)	147, 188, 203, 357
Tru9I	TTAA	4 cut(s)	147, 188, 203, 357
TscAI	CASTG	3 cut(s)	33, 81, 183
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	5 cut(s)	113, 194, 197, 239, 290
Tsp45I	GTSAC	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	3 cut(s)	33, 81, 183
Vha464I	CTTAAG	1 cut(s)	146
XceI	RCATGY	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.