Rw6G043970

Photosystem II reaction centre X protein (PsbX)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005636
Physical Location & Seq
Forward (+)
67117028 .. 67118040
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043970.1

Sequence Viewer

Length: 369 bp
ATGGCTTCTGTTTCAATGGCTATGCCAATTATGTCTGCCACCCAAAACAGAACAAACCAGTCAAGTTCATTGTTGAAGTCTATAATCCCAGTTGGGCAACCAAACAAGGCTGTGTTTGTGAAGCCAAAGTCGTCCACAGACATGCTCAAAGTGCAGGCCTCTTTGAAAGAGAAGGCAGTCACAGGCCTCACAGCAGCTGCATTGACAGCTTCCATGGTGATACCTGAGGTGGCTGAGGCGGCCGGGGCCGGCGTTACCCCATCTCTCAACAACTTTTTGCTTAGCATTGCAGCTGGAGGAGTTGTGCTTGTAGCAATTCTTGGAGCTGTTATTGGTGTCTCCAACTTTGATCCAGTTAAGAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbX

Protein Analysis

122

Amino Acids

12.36

Weight (kDa)

10.0

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbX PF06596 85 - 121 8.5e-17 Photosystem II reaction centre X protein (PsbX)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 239
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 240
AgsI TTSAA 3 cut(s) 15, 76, 166
AluBI AGCT 4 cut(s) 197, 209, 293, 326
AluI AGCT 4 cut(s) 197, 209, 293, 326
Alw26I GTCTC 1 cut(s) 343
AlwI GGATC 1 cut(s) 344
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 4 cut(s) 156, 184, 240, 246
ApeKI GCWGC 3 cut(s) 194, 197, 290
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 229
AxyI CCTNAGG 1 cut(s) 225
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 3 cut(s) 184, 206, 302
BccI CCATC 1 cut(s) 268
BcnI CCSGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 343
BisI GCNGC 4 cut(s) 195, 198, 240, 291
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 4 cut(s) 196, 199, 241, 292
Bme1390I CCNGG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 213, 243
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 58, 89, 353
Bse21I CCTNAGG 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 213, 243
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 216, 225
BseNI ACTGG 3 cut(s) 58, 89, 353
BseRI GAGGAG 1 cut(s) 312
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 184, 206, 302
BsgI GTGCAG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 4 cut(s) 158, 186, 242, 248
BsiEI CGRYCG 1 cut(s) 243
BsiSI CCGG 2 cut(s) 243, 249
BsmAI GTCTC 1 cut(s) 343
BsnI GGCC 4 cut(s) 158, 186, 242, 248
Bsp143I GATC 1 cut(s) 349
Bsp1720I GCTNAGC 1 cut(s) 281
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 1 cut(s) 239
BspANI GGCC 4 cut(s) 158, 186, 242, 248
BspCNI CTCAG 2 cut(s) 217, 226
BspLI GGNNCC 1 cut(s) 247
BspPI GGATC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 3 cut(s) 58, 89, 353
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 213, 243
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 156, 250
BstDEI CTNAG 3 cut(s) 225, 234, 281
BstDSI CCRYGG 1 cut(s) 213
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 1 cut(s) 349
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 4 cut(s) 151, 206, 239, 245
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 242
BstV1I GCAGC 3 cut(s) 184, 206, 302
BstZI CGGCCG 1 cut(s) 240
Bsu36I CCTNAGG 1 cut(s) 225
BsuRI GGCC 4 cut(s) 158, 186, 242, 248
BtgI CCRYGG 1 cut(s) 213
Cac8I GCNNGC 2 cut(s) 156, 250
CaiI CAGNNNCTG 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 246
CviAII CATG 2 cut(s) 142, 214
DdeI CTNAG 3 cut(s) 225, 234, 281
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 240
EagI CGGCCG 1 cut(s) 240
EclXI CGGCCG 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 213
Eco147I AGGCCT 2 cut(s) 158, 186
Eco52I CGGCCG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 145, 217
FaiI YATR 5 cut(s) 23, 32, 83, 143, 215
FatI CATG 2 cut(s) 141, 213
Fnu4HI GCNGC 4 cut(s) 195, 198, 240, 291
Fsp4HI GCNGC 4 cut(s) 195, 198, 240, 291
GluI GCNGC 4 cut(s) 195, 198, 240, 291
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 4 cut(s) 158, 186, 242, 248
HapII CCGG 2 cut(s) 243, 249
Hin1II CATG 2 cut(s) 145, 217
HpaII CCGG 2 cut(s) 243, 249
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 135
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 154, 200, 290
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 206, 239, 245
HpyF3I CTNAG 3 cut(s) 225, 234, 281
Hsp92II CATG 2 cut(s) 145, 217
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 8 cut(s) 71, 102, 140, 168, 237, 256, 262, 279
Lsp1109I GCAGC 3 cut(s) 184, 206, 302
MaeIII GTNAC 2 cut(s) 178, 253
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MluCI AATT 2 cut(s) 27, 315
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 5 cut(s) 169, 197, 220, 229, 290
MroNI GCCGGC 1 cut(s) 248
MseI TTAA 2 cut(s) 357, 367
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 197, 293
MspI CCGG 2 cut(s) 243, 249
MspR9I CCNGG 1 cut(s) 244
MwoI GCNNNNNNNGC 4 cut(s) 151, 206, 239, 245
NaeI GCCGGC 1 cut(s) 250
NciI CCSGG 1 cut(s) 244
NcoI CCATGG 1 cut(s) 213
NdeII GATC 1 cut(s) 349
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 2 cut(s) 145, 217
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 145
PceI AGGCCT 2 cut(s) 158, 186
PdiI GCCGGC 1 cut(s) 250
PkrI GCNGC 4 cut(s) 196, 199, 241, 292
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 246
PstNI CAGNNNCTG 1 cut(s) 197
PvuII CAGCTG 2 cut(s) 197, 293
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 357, 367
SatI GCNGC 4 cut(s) 195, 198, 240, 291
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 244
SetI ASST 6 cut(s) 199, 211, 226, 231, 295, 328
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 2 cut(s) 27, 315
SseBI AGGCCT 2 cut(s) 158, 186
SsiI CCGC 1 cut(s) 239
StuI AGGCCT 2 cut(s) 158, 186
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 213
TasI AATT 2 cut(s) 27, 315
TauI GCSGC 1 cut(s) 242
Tru1I TTAA 2 cut(s) 357, 367
Tru9I TTAA 2 cut(s) 357, 367
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 3 cut(s) 194, 197, 290
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 57
XceI RCATGY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.