Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005636

Physical Location & Seq

Genomic Coordinates Forward (+)

6819564 .. 6819935

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1087100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCAGCAACCGCAGCAGTTACAATGGCCATGCCATTGACCAATGCAACCCAAAAGAGGATCCAATCCTCAGCCGAGAGCTTGTTCAAGCCAATGCCACTGAGGCCCTCAAAGGCATTGGCACCCGCCGCGTCAAAATCGAGCGGGAGGCTCCAAGTCAGGGCTTCCTTGAAGGAGAAGGCGGTGACCGGAATCACGGCGGCCGCGCTCACCGCCTCAATGGTGATCCCGGAAGTGGCCGAAGCGGCCTCGGGAGTTTCTCCTTCTCTCAAGAACTTCTTGCTCAGCATTGCGGCCGGCGGCGTTGTAGTTGTTGTGATCGTTGGTGCTGTAGTTGGCGTGGCCAATTTCGACCCTGTTAAGAGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel PsbX

Protein Analysis

124

Amino Acids

12.34

Weight (kDa)

10.73

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbX	PF06596	86 - 122	6.9e-15	Photosystem II reaction centre X protein (PsbX)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06520
fragaria_vesca	FvH4_1g08270 FvH4_2g31210
malus_domestica	MD02G1087100.v1.1 MD08G1070100.v1.1 MD15G1214700.v1.1
prunus_persica	Prupe.1G406000_v2.0.a1 Prupe.7G202600_v2.0.a1
pyrus_communis	pycom15g04980
rosa_chinensis	RchiOBHm_Chr2g0094341 RchiOBHm_Chr6g0311601
rosa_laevigata	RLG00000010388 RLG00000016481
rosa_multiflora	Rmu_sc0002888.1_g000004 Rmu_sc0015881.1_g000006 Rmu_ssc0000229.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147220 Rroxscaffold_7G00157450
rosa_rugosa	Rorug02G0043400 Rorug06G0390000
rosa_samantha	Rh2BG091100 Rh2CG093700 Rh2DG090100 Rh6AG505200 Rh6BG516100 Rh6CG521900 Rh6DG507800
rosa_wichuraiana	Rw6G043970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AccBSI	CCGCTC	1 cut(s)	144
AccII	CGCG	2 cut(s)	131, 206
AclWI	GGATC	3 cut(s)	55, 68, 220
AcoI	YGGCCR	5 cut(s)	27, 201, 237, 294, 342
AfiI	CCNNNNNNNGG	3 cut(s)	57, 160, 235
AgsI	TTSAA	2 cut(s)	88, 172
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
AlwI	GGATC	3 cut(s)	55, 68, 220
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	7 cut(s)	27, 104, 201, 237, 246, 294, 342
ApeKI	GCWGC	2 cut(s)	5, 14
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	196, 202, 235
AvaI	CYCGRG	1 cut(s)	250
BalI	TGGCCA	2 cut(s)	29, 344
BamHI	GGATCC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	17, 26
BceAI	ACGGC	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	330
BglI	GCCNNNNNGGC	2 cut(s)	103, 245
BisI	GCNGC	8 cut(s)	6, 15, 129, 201, 204, 246, 294, 301
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	8 cut(s)	7, 16, 130, 202, 205, 247, 295, 302
Bme1390I	CCNGG	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	3 cut(s)	62, 123, 152
BmrFI	CCNGG	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	70
Bpu1102I	GCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 160, 235
Bse118I	RCCGGY	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	249
BseLI	CCNNNNNNNGG	3 cut(s)	57, 160, 235
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	3 cut(s)	84, 92, 298
BseX3I	CGGCCG	2 cut(s)	201, 294
BseXI	GCAGC	2 cut(s)	17, 26
Bsh1236I	CGCG	2 cut(s)	131, 206
Bsh1285I	CGRYCG	2 cut(s)	204, 297
BshFI	GGCC	7 cut(s)	29, 106, 203, 239, 248, 296, 344
BshNI	GGYRCC	1 cut(s)	121
BsiEI	CGRYCG	2 cut(s)	204, 297
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	189, 230, 297
BslI	CCNNNNNNNGG	3 cut(s)	57, 160, 235
BsnI	GGCC	7 cut(s)	29, 106, 203, 239, 248, 296, 344
BsoBI	CYCGRG	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	60, 225, 318
Bsp1720I	GCTNAGC	1 cut(s)	284
BspANI	GGCC	7 cut(s)	29, 106, 203, 239, 248, 296, 344
BspCNI	CTCAG	3 cut(s)	83, 93, 297
BspFNI	CGCG	2 cut(s)	131, 206
BspLI	GGNNCC	3 cut(s)	62, 123, 152
BspPI	GGATC	3 cut(s)	55, 68, 220
BspT107I	GGYRCC	1 cut(s)	121
BsrBI	CCGCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	3 cut(s)	60, 225, 318
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	3 cut(s)	70, 101, 284
BstEII	GGTNACC	1 cut(s)	184
BstFNI	CGCG	2 cut(s)	131, 206
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	3 cut(s)	63, 228, 321
BstMBI	GATC	3 cut(s)	60, 225, 318
BstMCI	CGRYCG	2 cut(s)	204, 297
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 14, 103, 128, 212, 245
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	2 cut(s)	131, 206
BstV1I	GCAGC	2 cut(s)	17, 26
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BstZI	CGGCCG	2 cut(s)	201, 294
BsuRI	GGCC	7 cut(s)	29, 106, 203, 239, 248, 296, 344
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	298
CciNI	GCGGCCGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	1 cut(s)	120
CviAII	CATG	1 cut(s)	31
DdeI	CTNAG	3 cut(s)	70, 101, 284
DpnI	GATC	3 cut(s)	62, 227, 320
DpnII	GATC	3 cut(s)	60, 225, 318
EaeI	YGGCCR	5 cut(s)	27, 201, 237, 294, 342
EagI	CGGCCG	2 cut(s)	201, 294
EclXI	CGGCCG	2 cut(s)	201, 294
Eco52I	CGGCCG	2 cut(s)	201, 294
Eco88I	CYCGRG	1 cut(s)	250
Eco91I	GGTNACC	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	105
EcoO65I	GGTNACC	1 cut(s)	184
FaeI	CATG	1 cut(s)	34
FaiI	YATR	1 cut(s)	32
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	1 cut(s)	30
FauI	CCCGC	2 cut(s)	133, 137
Fnu4HI	GCNGC	8 cut(s)	6, 15, 129, 201, 204, 246, 294, 301
Fsp4HI	GCNGC	8 cut(s)	6, 15, 129, 201, 204, 246, 294, 301
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	8 cut(s)	6, 15, 129, 201, 204, 246, 294, 301
HaeIII	GGCC	7 cut(s)	29, 106, 203, 239, 248, 296, 344
HapII	CCGG	3 cut(s)	189, 230, 297
HgaI	GACGC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	3 cut(s)	189, 230, 297
HphI	GGTGA	3 cut(s)	196, 202, 235
Hpy188III	TCNNGA	2 cut(s)	252, 271
HpyAV	CCTTC	3 cut(s)	166, 172, 273
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 14, 103, 128, 212, 245
HpyF3I	CTNAG	3 cut(s)	70, 101, 284
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	60, 225, 318
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	4 cut(s)	145, 202, 243, 310
Lsp1109I	GCAGC	2 cut(s)	17, 26
MaeIII	GTNAC	2 cut(s)	19, 184
MalI	GATC	3 cut(s)	62, 227, 320
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	3 cut(s)	60, 225, 318
MflI	RGATCY	1 cut(s)	60
MlsI	TGGCCA	2 cut(s)	29, 344
MluCI	AATT	1 cut(s)	346
MluNI	TGGCCA	2 cut(s)	29, 344
MnlI	CCTC	8 cut(s)	51, 79, 96, 118, 141, 226, 259, 359
Mox20I	TGGCCA	2 cut(s)	29, 344
MroNI	GCCGGC	1 cut(s)	296
MscI	TGGCCA	2 cut(s)	29, 344
MseI	TTAA	1 cut(s)	360
Msp20I	TGGCCA	2 cut(s)	29, 344
MspI	CCGG	3 cut(s)	189, 230, 297
MspR9I	CCNGG	1 cut(s)	230
MvnI	CGCG	2 cut(s)	131, 206
MwoI	GCNNNNNNNGC	6 cut(s)	11, 14, 103, 128, 212, 245
NaeI	GCCGGC	1 cut(s)	298
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	60, 225, 318
NgoMIV	GCCGGC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	3 cut(s)	62, 123, 152
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	184
NotI	GCGGCCGC	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	192
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	8 cut(s)	7, 16, 130, 202, 205, 247, 295, 302
PspEI	GGTNACC	1 cut(s)	184
PspN4I	GGNNCC	3 cut(s)	62, 123, 152
PspPI	GGNCC	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	8 cut(s)	6, 15, 129, 201, 204, 246, 294, 301
Sau3AI	GATC	3 cut(s)	60, 225, 318
Sau96I	GGNCC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	1 cut(s)	83
SfcI	CTRYAG	1 cut(s)	330
SfiI	GGCCNNNNNGGCC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	228
TaqI	TCGA	2 cut(s)	140, 351
TasI	AATT	1 cut(s)	346
TauI	GCSGC	6 cut(s)	131, 203, 206, 248, 296, 303
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	5, 14
Tsp45I	GTSAC	1 cut(s)	184
TspRI	CASTG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.