FvH4_1g08270

Photosystem II reaction centre X protein (PsbX)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005636
Physical Location & Seq
Forward (+)
4379755 .. 4380126
372 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08270.t1

Sequence Viewer

Length: 372 bp
ATGGCTTCAAGCTCAGCAGTTACAATGGCTATGCCATTGCCCAATGCCACCACTCAAAAGAGGGTGGTTCAATCCTCAGAGGCCTTCTTCAAGCCACTACCCCTCAGGCACTCAAAGGCTGTGTCCTCACCTTCAAGATCAAGTGGGAGGCTTGAGGTCAGGGCTTCCCTGAAGGAGAAGGCCGTCACCGCAATTACCGCTGCCGCACTCACAGCCTCAATGGTGGTCCCAGATGTGGCTGAAGCCGCCTCCGGAGTCTCTCCGTCGCTCAAGAACTTCTTGCTCAGCATTGCTGCCGGCGGCACTGTACTTGTTGTGATTGTTGGAGCTGTAATCGGAGTGTCCAATTTCGACCCTGTTAAGAGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbX

Protein Analysis

124

Amino Acids

12.52

Weight (kDa)

10.66

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbX PF06596 86 - 122 1.5e-15 Photosystem II reaction centre X protein (PsbX)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 251
AciI CCGC 5 cut(s) 189, 198, 204, 246, 300
AcuI CTGAAG 2 cut(s) 191, 261
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 4 cut(s) 9, 71, 91, 135
AluBI AGCT 2 cut(s) 12, 329
AluI AGCT 2 cut(s) 12, 329
Alw26I GTCTC 1 cut(s) 262
Aor13HI TCCGGA 1 cut(s) 251
AoxI GGCC 2 cut(s) 81, 180
ApeKI GCWGC 2 cut(s) 200, 293
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 120, 178
AvaII GGWCC 1 cut(s) 226
AxyI CCTNAGG 1 cut(s) 104
BbvI GCAGC 2 cut(s) 187, 280
BceAI ACGGC 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 262
BisI GCNGC 5 cut(s) 201, 204, 246, 294, 301
BlpI GCTNAGC 2 cut(s) 13, 284
BlsI GCNGC 5 cut(s) 202, 205, 247, 295, 302
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 228
Bpu1102I GCTNAGC 2 cut(s) 13, 284
BpuEI CTTGAG 2 cut(s) 173, 254
BsaWI WCCGGW 1 cut(s) 251
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 296
Bse21I CCTNAGG 1 cut(s) 104
Bse3DI GCAATG 2 cut(s) 35, 288
BseAI TCCGGA 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 2 cut(s) 35, 288
BseMII CTCAG 4 cut(s) 27, 90, 118, 298
BseXI GCAGC 2 cut(s) 187, 280
BshFI GGCC 2 cut(s) 83, 182
BsiSI CCGG 2 cut(s) 252, 297
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 2 cut(s) 83, 182
Bsp13I TCCGGA 1 cut(s) 251
Bsp143I GATC 1 cut(s) 137
Bsp1720I GCTNAGC 2 cut(s) 13, 284
BspACI CCGC 5 cut(s) 189, 198, 204, 246, 300
BspANI GGCC 2 cut(s) 83, 182
BspCNI CTCAG 4 cut(s) 26, 89, 117, 297
BspEI TCCGGA 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 228
BsrDI GCAATG 2 cut(s) 35, 288
BsrFI RCCGGY 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 296
BssMI GATC 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 4 cut(s) 13, 76, 104, 284
BstKTI GATC 1 cut(s) 140
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 4 cut(s) 188, 197, 212, 245
BstV1I GCAGC 2 cut(s) 187, 280
Bsu36I CCTNAGG 1 cut(s) 104
BsuRI GGCC 2 cut(s) 83, 182
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 308
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 4 cut(s) 13, 76, 104, 284
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
Eco147I AGGCCT 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 2 cut(s) 191, 261
Eco81I CCTNAGG 1 cut(s) 104
FaiI YATR 1 cut(s) 32
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 212
Fnu4HI GCNGC 5 cut(s) 201, 204, 246, 294, 301
Fsp4HI GCNGC 5 cut(s) 201, 204, 246, 294, 301
GluI GCNGC 5 cut(s) 201, 204, 246, 294, 301
HaeIII GGCC 2 cut(s) 83, 182
HapII CCGG 2 cut(s) 252, 297
HinfI GANTC 1 cut(s) 255
HpaII CCGG 2 cut(s) 252, 297
HphI GGTGA 2 cut(s) 120, 178
Hpy188I TCNGA 2 cut(s) 79, 338
Hpy188III TCNNGA 3 cut(s) 135, 252, 271
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 4 cut(s) 94, 141, 166, 172
HpyCH4III ACNGT 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 197, 212, 245
HpyF3I CTNAG 4 cut(s) 13, 76, 104, 284
Kpn2I TCCGGA 1 cut(s) 251
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Kzo9I GATC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 6 cut(s) 91, 145, 182, 243, 265, 310
Lsp1109I GCAGC 2 cut(s) 187, 280
MaeIII GTNAC 2 cut(s) 19, 184
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 1 cut(s) 79
MluCI AATT 2 cut(s) 192, 346
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 304
MroI TCCGGA 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 296
MseI TTAA 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 252, 297
MwoI GCNNNNNNNGC 4 cut(s) 188, 197, 212, 245
NaeI GCCGGC 1 cut(s) 298
NdeII GATC 1 cut(s) 137
NgoMIV GCCGGC 1 cut(s) 296
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 184
PceI AGGCCT 1 cut(s) 83
PdiI GCCGGC 1 cut(s) 298
PkrI GCNGC 5 cut(s) 202, 205, 247, 295, 302
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 226
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 5 cut(s) 201, 204, 246, 294, 301
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 264
SetI ASST 4 cut(s) 14, 133, 159, 331
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 2 cut(s) 152, 269
SmoI CTYRAG 2 cut(s) 152, 269
Sse9I AATT 2 cut(s) 192, 346
SseBI AGGCCT 1 cut(s) 83
SsiI CCGC 5 cut(s) 189, 198, 204, 246, 300
StuI AGGCCT 1 cut(s) 83
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 351
TasI AATT 2 cut(s) 192, 346
TatI WGTACW 1 cut(s) 307
TauI GCSGC 3 cut(s) 206, 248, 303
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 200, 293
Tsp45I GTSAC 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.