Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005636

Physical Location & Seq

Genomic Coordinates Reverse (-)

18835075 .. 18835612

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G202600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCATCAACCACTGCAGTTACAATGGCTATGCCATTGCCCAATGCAAGCCGAAAGAGGATCCAATCCTCCCCAGAGACCTTCTTCAAGCCACTGCCACTGAGGCCCTCAAGGGCTTTAACACCAGCAGCAGCATCAAGATCAAGTGGGAGACTTGAAGTCAGGGCTTCCCTCAAGGAGAAGGCGGTTACCGGCCTGACCGCAGCCGCGCTCACGGCCTCAATGGTGATCCCGGAGGTGGCCGAAGCCGCTTCCGGAGTCTCTCCTTCTCTCAAGAACTTCTTGCTCAGCATTGCTGCCGGCGGTGTTGTACTTGTCGTGCTCGTCGGTGCCGTAATTGGCGTGTCCAATTTCGACCCTGTCAAGAGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbX

Protein Analysis

125

Amino Acids

12.66

Weight (kDa)

11.29

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06520
fragaria_vesca	FvH4_1g08270 FvH4_2g31210
malus_domestica	MD02G1087100.v1.1 MD08G1070100.v1.1 MD15G1214700.v1.1
prunus_persica	Prupe.1G406000_v2.0.a1 Prupe.7G202600_v2.0.a1
pyrus_communis	pycom15g04980
rosa_chinensis	RchiOBHm_Chr2g0094341 RchiOBHm_Chr6g0311601
rosa_laevigata	RLG00000010388 RLG00000016481
rosa_multiflora	Rmu_sc0002888.1_g000004 Rmu_sc0015881.1_g000006 Rmu_ssc0000229.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147220 Rroxscaffold_7G00157450
rosa_rugosa	Rorug02G0043400 Rorug06G0390000
rosa_samantha	Rh2BG091100 Rh2CG093700 Rh2DG090100 Rh6AG505200 Rh6BG516100 Rh6CG521900 Rh6DG507800
rosa_wichuraiana	Rw6G043970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	329
AccII	CGCG	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	254
AciI	CCGC	5 cut(s)	185, 201, 207, 249, 303
AclWI	GGATC	3 cut(s)	55, 68, 223
AcoI	YGGCCR	1 cut(s)	240
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	88, 158
AhdI	GACNNNNNGTC	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	3 cut(s)	71, 145, 265
AlwI	GGATC	3 cut(s)	55, 68, 223
Aor13HI	TCCGGA	1 cut(s)	254
AoxI	GGCC	4 cut(s)	104, 193, 216, 240
ApeKI	GCWGC	4 cut(s)	128, 131, 203, 296
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	4 cut(s)	140, 143, 215, 283
BceAI	ACGGC	2 cut(s)	231, 317
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	3 cut(s)	71, 145, 265
BfmI	CTRYAG	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	103
BisI	GCNGC	6 cut(s)	129, 132, 204, 207, 249, 297
BlpI	GCTNAGC	1 cut(s)	287
BlsI	GCNGC	6 cut(s)	130, 133, 205, 208, 250, 298
Bme1390I	CCNGG	1 cut(s)	233
BmeRI	GACNNNNNGTC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	62, 331
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	14, 143
Bpu1102I	GCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	3 cut(s)	94, 158, 257
BpuMI	CCSGG	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse118I	RCCGGY	2 cut(s)	191, 299
Bse3DI	GCAATG	2 cut(s)	35, 291
BseAI	TCCGGA	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	2 cut(s)	35, 291
BseMII	CTCAG	2 cut(s)	92, 301
BseXI	GCAGC	4 cut(s)	140, 143, 215, 283
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	4 cut(s)	106, 195, 218, 242
BshNI	GGYRCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	4 cut(s)	192, 233, 255, 300
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	3 cut(s)	71, 145, 265
BsnI	GGCC	4 cut(s)	106, 195, 218, 242
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp13I	TCCGGA	1 cut(s)	254
Bsp143I	GATC	3 cut(s)	60, 140, 228
Bsp1720I	GCTNAGC	1 cut(s)	287
BspACI	CCGC	5 cut(s)	185, 201, 207, 249, 303
BspANI	GGCC	4 cut(s)	106, 195, 218, 242
BspCNI	CTCAG	2 cut(s)	93, 300
BspEI	TCCGGA	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	62, 331
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	3 cut(s)	55, 68, 223
BspT107I	GGYRCC	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	35, 291
BsrFI	RCCGGY	2 cut(s)	191, 299
BssAI	RCCGGY	2 cut(s)	191, 299
BssMI	GATC	3 cut(s)	60, 140, 228
BstC8I	GCNNGC	2 cut(s)	49, 301
BstDEI	CTNAG	2 cut(s)	101, 287
BstEII	GGTNACC	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	3 cut(s)	63, 143, 231
BstMAI	GTCTC	3 cut(s)	71, 145, 265
BstMBI	GATC	3 cut(s)	60, 140, 228
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 215, 248
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	4 cut(s)	140, 143, 215, 283
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	106, 195, 218, 242
BtsI	GCAGTG	2 cut(s)	12, 92
BtsIMutI	CAGTG	3 cut(s)	12, 92, 98
Cac8I	GCNNGC	2 cut(s)	49, 301
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	2 cut(s)	191, 299
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	311
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	101, 287
DpnI	GATC	3 cut(s)	62, 142, 230
DpnII	GATC	3 cut(s)	60, 140, 228
DriI	GACNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	240
Eam1105I	GACNNNNNGTC	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	105
EcoO65I	GGTNACC	1 cut(s)	187
FaiI	YATR	1 cut(s)	32
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
Fnu4HI	GCNGC	6 cut(s)	129, 132, 204, 207, 249, 297
Fsp4HI	GCNGC	6 cut(s)	129, 132, 204, 207, 249, 297
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	6 cut(s)	129, 132, 204, 207, 249, 297
HaeIII	GGCC	4 cut(s)	106, 195, 218, 242
HapII	CCGG	4 cut(s)	192, 233, 255, 300
HhaI	GCGC	1 cut(s)	211
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	4 cut(s)	192, 233, 255, 300
HphI	GGTGA	1 cut(s)	238
Hpy188III	TCNNGA	4 cut(s)	138, 255, 274, 364
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	3 cut(s)	91, 175, 276
HpyCH4V	TGCA	2 cut(s)	17, 47
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 215, 248
HpyF3I	CTNAG	2 cut(s)	101, 287
HspAI	GCGC	1 cut(s)	209
Kpn2I	TCCGGA	1 cut(s)	254
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	60, 140, 228
LpnPI	CCDG	8 cut(s)	87, 138, 148, 205, 209, 246, 268, 313
Lsp1109I	GCAGC	4 cut(s)	140, 143, 215, 283
LweI	GCATC	2 cut(s)	14, 143
MaeIII	GTNAC	2 cut(s)	19, 187
MalI	GATC	3 cut(s)	62, 142, 230
MboI	GATC	3 cut(s)	60, 140, 228
MboII	GAAGA	1 cut(s)	76
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	2 cut(s)	336, 349
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	8 cut(s)	51, 79, 96, 118, 182, 229, 229, 362
MroI	TCCGGA	1 cut(s)	254
MroNI	GCCGGC	1 cut(s)	299
MseI	TTAA	1 cut(s)	119
MspI	CCGG	4 cut(s)	192, 233, 255, 300
MspR9I	CCNGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	103, 215, 248
NaeI	GCCGGC	1 cut(s)	301
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	3 cut(s)	60, 140, 228
NgoMIV	GCCGGC	1 cut(s)	299
NlaIV	GGNNCC	2 cut(s)	62, 331
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdiI	GCCGGC	1 cut(s)	301
PflFI	GACNNNGTC	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	6 cut(s)	130, 133, 205, 208, 250, 298
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PspEI	GGTNACC	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	62, 331
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	60
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	6 cut(s)	129, 132, 204, 207, 249, 297
Sau3AI	GATC	3 cut(s)	60, 140, 228
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	2 cut(s)	83, 240
SfaNI	GCATC	2 cut(s)	14, 143
SfcI	CTRYAG	1 cut(s)	15
SmlI	CTYRAG	3 cut(s)	109, 173, 272
SmoI	CTYRAG	3 cut(s)	109, 173, 272
Sse9I	AATT	2 cut(s)	336, 349
SsiI	CCGC	5 cut(s)	185, 201, 207, 249, 303
StyD4I	CCNGG	1 cut(s)	231
TaqI	TCGA	1 cut(s)	354
TasI	AATT	2 cut(s)	336, 349
TatI	WGTACW	1 cut(s)	310
TauI	GCSGC	2 cut(s)	209, 251
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	3 cut(s)	19, 99, 105
TseI	GCWGC	4 cut(s)	128, 131, 203, 296
TspRI	CASTG	3 cut(s)	19, 99, 105
Tth111I	GACNNNGTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.