Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005636

Physical Location & Seq

Genomic Coordinates Forward (+)

53411013 .. 53411948

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0390000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTCTTTAGTTGAAGAATCACCAGACTTTCTCCAAGTCTTTTCTGATGGAACTGTGAAACGCTTTGCACCCGGAATAGTCCCTGCCTCATCAGAACCATCTAATGGATACCAGTTCAAGGATGTAATCATTGACTCGTCGAAACAAATTACCGGGAGGGTTTTCATTCCTAGTGATCCAACATCCTTGAGTAAGCTTCCAGTTGTGGTTTATTTTCATGGTGGAGGCTTCTGCATTGGCTCAACCACATGGATTGGTTACCATCATTTCCTAGGAGACTTATCCGTTTCATCCCAATCGATTGTTCTTTCAATTGACTACCGTTTGGCTCCAGAGAACCGGCTTCCCATAGCTTATGAAGACTGTTATGACTCACTTGTTTGGCTTGGTCACCAAGCAAGCTGTGATCCATGGCTGAACAAGGCTGACCTCTCCCGGGTTTTCTTATCCGGGGACAGTGCTGGAGGGAACATAGCACACAATGTTGCTGTGAAAACTATGCGCAATTCACTCATTCATGTCAAGATAAGAGGACTGTTGTTGATACATCCTTATTTTGGGAGTGAAAAGAGAACTGAGAAAGAGATGTCGACGGATCAAGAGGCAGTTGGGAATGTGGCGAGCAATGACATGTTCTGGAGACTTAGTATACCTGAAGGTTCCAATCGCGATTATTTCGGATGCAACTTTGACAAGACAGAACTGTCTGTAATCCAATGGCGCAATGAGTTTCCTGCTGTGACAGTTTATGTTGCTGAACTGGATTTTTTGAAAGAGAGGGGTGTAATGTATGCAGAGTTTCTGCAAAGAAAAGGAGTTGAAGTGAAGCTGGTCGAGGCTGAGAATGAGTCCCATGTGTTTCATGTATTCAAACCTGAATGTGAGGCAACCCGTTTGCTTCAGAAAAACATGAAGGAGTTCATTTGGAACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbX

Protein Analysis

311

Amino Acids

35.11

Weight (kDa)

5.51

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	54 - 110	4.1e-07	Carboxylesterase family
BD-FAE	PF20434	62 - 169	1.2e-12	BD-FAE
Abhydrolase_3	PF07859	69 - 288	3.3e-55	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06520
fragaria_vesca	FvH4_1g08270 FvH4_2g31210
malus_domestica	MD02G1087100.v1.1 MD08G1070100.v1.1 MD15G1214700.v1.1
prunus_persica	Prupe.1G406000_v2.0.a1 Prupe.7G202600_v2.0.a1
pyrus_communis	pycom15g04980
rosa_chinensis	RchiOBHm_Chr2g0094341 RchiOBHm_Chr6g0311601
rosa_laevigata	RLG00000010388 RLG00000016481
rosa_multiflora	Rmu_sc0002888.1_g000004 Rmu_sc0015881.1_g000006 Rmu_ssc0000229.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147220 Rroxscaffold_7G00157450
rosa_rugosa	Rorug02G0043400 Rorug06G0390000
rosa_samantha	Rh2BG091100 Rh2CG093700 Rh2DG090100 Rh6AG505200 Rh6BG516100 Rh6CG521900 Rh6DG507800
rosa_wichuraiana	Rw6G043970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	703
Acc16I	TGCGCA	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	104
AccI	GTMKAC	2 cut(s)	590, 649
AccII	CGCG	1 cut(s)	669
AclWI	GGATC	3 cut(s)	170, 401, 603
AcuI	CTGAAG	2 cut(s)	675, 884
AfiI	CCNNNNNNNGG	4 cut(s)	104, 118, 436, 557
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	6 cut(s)	14, 118, 312, 772, 821, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	4 cut(s)	196, 353, 402, 829
AluI	AGCT	4 cut(s)	196, 353, 402, 829
Alw26I	GTCTC	2 cut(s)	270, 634
AlwI	GGATC	3 cut(s)	170, 401, 603
Ama87I	CYCGRG	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	917
AspA2I	CCTAGG	1 cut(s)	271
AspLEI	GCGC	2 cut(s)	504, 723
AsuC2I	CCSGG	5 cut(s)	72, 154, 436, 437, 451
AsuHPI	GGTGA	2 cut(s)	12, 383
AvaI	CYCGRG	1 cut(s)	435
AvrII	CCTAGG	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	366
BccI	CCATC	3 cut(s)	41, 106, 270
BciVI	GTATCC	1 cut(s)	101
BcnI	CCSGG	5 cut(s)	72, 154, 436, 437, 451
BcoDI	GTCTC	2 cut(s)	270, 634
BfaI	CTAG	2 cut(s)	171, 272
BfuI	GTATCC	1 cut(s)	101
BlnI	CCTAGG	1 cut(s)	271
Bme1390I	CCNGG	5 cut(s)	72, 154, 436, 437, 451
BmeT110I	CYCGRG	1 cut(s)	435
BmiI	GGNNCC	2 cut(s)	330, 661
BmrFI	CCNGG	5 cut(s)	72, 154, 436, 437, 451
BmsI	GCATC	1 cut(s)	671
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	3 cut(s)	315, 483, 658
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	5 cut(s)	72, 154, 436, 437, 451
Bsa29I	ATCGAT	1 cut(s)	299
BsaJI	CCNNGG	4 cut(s)	271, 410, 435, 450
BsaXI	ACNNNNNCTCC	4 cut(s)	631, 661, 807, 837
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 118, 436, 557
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	3 cut(s)	112, 200, 765
Bse3DI	GCAATG	2 cut(s)	631, 730
BseCI	ATCGAT	1 cut(s)	299
BseDI	CCNNGG	4 cut(s)	271, 410, 435, 450
BseGI	GGATG	5 cut(s)	127, 182, 290, 547, 686
BseLI	CCNNNNNNNGG	4 cut(s)	104, 118, 436, 557
BseMI	GCAATG	2 cut(s)	631, 730
BseMII	CTCAG	2 cut(s)	567, 831
BseNI	ACTGG	3 cut(s)	112, 200, 765
Bsh1236I	CGCG	1 cut(s)	669
BshVI	ATCGAT	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	5 cut(s)	72, 153, 340, 436, 450
BslFI	GGGAC	3 cut(s)	65, 467, 835
BslI	CCNNNNNNNGG	4 cut(s)	104, 118, 436, 557
BsmAI	GTCTC	2 cut(s)	270, 634
BsmFI	GGGAC	3 cut(s)	65, 467, 835
BsoBI	CYCGRG	1 cut(s)	435
Bsp143I	GATC	3 cut(s)	175, 406, 595
Bsp19I	CCATGG	1 cut(s)	410
Bsp68I	TCGCGA	1 cut(s)	669
BspCNI	CTCAG	2 cut(s)	568, 832
BspDI	ATCGAT	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	330, 661
BspPI	GGATC	3 cut(s)	170, 401, 603
BsrDI	GCAATG	2 cut(s)	631, 730
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	112, 200, 765
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	4 cut(s)	271, 410, 435, 450
BssMI	GATC	3 cut(s)	175, 406, 595
BssNAI	GTATAC	1 cut(s)	650
BssT1I	CCWWGG	2 cut(s)	271, 410
Bst1107I	GTATAC	1 cut(s)	650
Bst4CI	ACNGT	7 cut(s)	55, 323, 365, 458, 537, 705, 745
BstC8I	GCNNGC	2 cut(s)	400, 622
BstDEI	CTNAG	3 cut(s)	576, 644, 840
BstDSI	CCRYGG	1 cut(s)	410
BstEII	GGTNACC	2 cut(s)	257, 389
BstF5I	GGATG	5 cut(s)	127, 182, 290, 547, 686
BstFNI	CGCG	1 cut(s)	669
BstHHI	GCGC	2 cut(s)	504, 723
BstKTI	GATC	3 cut(s)	178, 409, 598
BstMAI	GTCTC	2 cut(s)	270, 634
BstMBI	GATC	3 cut(s)	175, 406, 595
BstNSI	RCATGY	1 cut(s)	634
BstPI	GGTNACC	2 cut(s)	257, 389
BstSCI	CCNGG	5 cut(s)	70, 152, 434, 435, 449
BstUI	CGCG	1 cut(s)	669
BstV2I	GAAGAC	1 cut(s)	366
BstZ17I	GTATAC	1 cut(s)	650
Bsu15I	ATCGAT	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	101
BsuTUI	ATCGAT	1 cut(s)	299
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	5 cut(s)	127, 182, 290, 547, 686
BtsIMutI	CAGTG	1 cut(s)	463
BtuMI	TCGCGA	1 cut(s)	669
Cac8I	GCNNGC	2 cut(s)	400, 622
CfoI	GCGC	2 cut(s)	504, 723
Cfr10I	RCCGGY	1 cut(s)	339
Cfr9I	CCCGGG	1 cut(s)	435
ClaI	ATCGAT	1 cut(s)	299
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	8 cut(s)	218, 249, 411, 518, 631, 854, 863, 910
DdeI	CTNAG	3 cut(s)	576, 644, 840
DpnI	GATC	3 cut(s)	177, 408, 597
DpnII	GATC	3 cut(s)	175, 406, 595
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
Eco130I	CCWWGG	2 cut(s)	271, 410
Eco57I	CTGAAG	2 cut(s)	675, 884
Eco88I	CYCGRG	1 cut(s)	435
Eco91I	GGTNACC	2 cut(s)	257, 389
EcoO65I	GGTNACC	2 cut(s)	257, 389
EcoT14I	CCWWGG	2 cut(s)	271, 410
ErhI	CCWWGG	2 cut(s)	271, 410
FaeI	CATG	8 cut(s)	221, 252, 414, 521, 634, 857, 866, 913
FaqI	GGGAC	3 cut(s)	65, 467, 835
FatI	CATG	8 cut(s)	217, 248, 410, 517, 630, 853, 862, 909
FblI	GTMKAC	2 cut(s)	590, 649
FokI	GGATG	5 cut(s)	134, 169, 277, 534, 693
FspBI	CTAG	2 cut(s)	171, 272
FspI	TGCGCA	1 cut(s)	503
GlaI	GCGC	2 cut(s)	503, 722
GsuI	CTGGAG	3 cut(s)	315, 483, 658
HapII	CCGG	5 cut(s)	72, 153, 340, 436, 450
HhaI	GCGC	2 cut(s)	504, 723
Hin1II	CATG	8 cut(s)	221, 252, 414, 521, 634, 857, 866, 913
Hin6I	GCGC	2 cut(s)	502, 721
HinP1I	GCGC	2 cut(s)	502, 721
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	17, 134, 371, 848
HpaII	CCGG	5 cut(s)	72, 153, 340, 436, 450
HphI	GGTGA	2 cut(s)	12, 383
Hpy166II	GTNNAC	2 cut(s)	591, 650
Hpy188I	TCNGA	4 cut(s)	46, 94, 680, 903
Hpy188III	TCNNGA	5 cut(s)	332, 523, 599, 637, 668
Hpy8I	GTNNAC	2 cut(s)	591, 650
Hpy99I	CGWCG	2 cut(s)	142, 595
HpyAV	CCTTC	2 cut(s)	650, 907
HpyCH4III	ACNGT	7 cut(s)	55, 323, 365, 458, 537, 705, 745
HpyCH4V	TGCA	5 cut(s)	68, 234, 684, 794, 805
HpyF3I	CTNAG	3 cut(s)	576, 644, 840
Hsp92II	CATG	8 cut(s)	221, 252, 414, 521, 634, 857, 866, 913
HspAI	GCGC	2 cut(s)	502, 721
Kzo9I	GATC	3 cut(s)	175, 406, 595
LmnI	GCTCC	1 cut(s)	334
LweI	GCATC	1 cut(s)	671
MaeI	CTAG	2 cut(s)	171, 272
MaeIII	GTNAC	3 cut(s)	257, 389, 739
MalI	GATC	3 cut(s)	177, 408, 597
MboI	GATC	3 cut(s)	175, 406, 595
MboII	GAAGA	2 cut(s)	26, 371
MfeI	CAATTG	1 cut(s)	312
MluCI	AATT	3 cut(s)	147, 312, 505
MlyI	GAGTC	3 cut(s)	128, 365, 857
MmeI	TCCRAC	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	917
MspI	CCGG	5 cut(s)	72, 153, 340, 436, 450
MspR9I	CCNGG	5 cut(s)	72, 154, 436, 437, 451
MunI	CAATTG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	669
NciI	CCSGG	5 cut(s)	72, 154, 436, 437, 451
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	3 cut(s)	175, 406, 595
NlaIII	CATG	8 cut(s)	221, 252, 414, 521, 634, 857, 866, 913
NlaIV	GGNNCC	2 cut(s)	330, 661
NmuCI	GTSAC	2 cut(s)	389, 739
NruI	TCGCGA	1 cut(s)	669
NsbI	TGCGCA	1 cut(s)	503
NspI	RCATGY	1 cut(s)	634
PciI	ACATGT	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	104
PleI	GAGTC	3 cut(s)	128, 365, 856
PpsI	GAGTC	3 cut(s)	128, 365, 856
PscI	ACATGT	1 cut(s)	630
PspEI	GGTNACC	2 cut(s)	257, 389
PspN4I	GGNNCC	2 cut(s)	330, 661
RruI	TCGCGA	1 cut(s)	669
SalI	GTCGAC	1 cut(s)	589
Sau3AI	GATC	3 cut(s)	175, 406, 595
SchI	GAGTC	3 cut(s)	128, 365, 857
ScrFI	CCNGG	5 cut(s)	72, 154, 436, 437, 451
SetI	ASST	8 cut(s)	198, 355, 404, 432, 655, 661, 831, 877
SfaNI	GCATC	1 cut(s)	671
SmaI	CCCGGG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	3 cut(s)	147, 312, 505
SspMI	CTAG	2 cut(s)	171, 272
StyD4I	CCNGG	5 cut(s)	70, 152, 434, 435, 449
StyI	CCWWGG	2 cut(s)	271, 410
TaaI	ACNGT	7 cut(s)	55, 323, 365, 458, 537, 705, 745
TaqI	TCGA	4 cut(s)	140, 299, 590, 834
TasI	AATT	3 cut(s)	147, 312, 505
TfiI	GAWTC	1 cut(s)	17
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	2 cut(s)	389, 739
Tsp45I	GTSAC	2 cut(s)	389, 739
TspDTI	ATGAA	8 cut(s)	154, 206, 279, 372, 506, 851, 910, 926
TspGWI	ACGGA	2 cut(s)	274, 608
TspMI	CCCGGG	1 cut(s)	435
TspRI	CASTG	1 cut(s)	463
Van91I	CCANNNNNTGG	1 cut(s)	104
XceI	RCATGY	1 cut(s)	634
XmaI	CCCGGG	1 cut(s)	435
XmaJI	CCTAGG	1 cut(s)	271
XmiI	GTMKAC	2 cut(s)	590, 649
XmnI	GAANNNNTTC	1 cut(s)	917
XspI	CTAG	2 cut(s)	171, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.