MD08G1070100.v1.1

Ultraviolet-B-repressible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0005636
Physical Location & Seq
Forward (+)
5548084 .. 5548473
390 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1070100.v1.1.491

Sequence Viewer

Length: 348 bp
ATGCCACTAATGTCTGCCACCCAAAACAGTTTAACCCAAAACACAGAAGCACTTTTCAGATCAATCCCATTGAAGCCATCAAAGAAAGCTGGTTTTGTGAACCCAAAGCCCAAGGGCATGTTCAAGGTGGAGGCCTCTTTGAAAGAAAAGGCGGCGACAGGCCTAGCAGCGGCGGCATTGACAGCCTCCATGGTGATTCCTGAGGTGGCTGAGGCTGCGGGGTCTTCCGGGCTTACGCCGTCTTTGAACAACTTCTTGCTCAGCATTGCTGCTGGTGGAGTTGTGCTTGTAGCGATCATTGGTGCTGTTGTTGGGGTTTCCAACTTTGACCCAGTTAAGAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbX

Protein Analysis

116

Amino Acids

11.67

Weight (kDa)

9.9

Isoelectric Point (pI)

22.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbX PF06596 78 - 114 1.1e-16 Photosystem II reaction centre X protein (PsbX)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 152, 170, 173, 218
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 4 cut(s) 73, 124, 142, 247
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
AoxI GGCC 2 cut(s) 132, 160
ApeKI GCWGC 3 cut(s) 167, 215, 269
Asp700I GAANNNNTTC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 179, 202, 256
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 229
BfaI CTAG 1 cut(s) 164
BisI GCNGC 6 cut(s) 153, 168, 171, 174, 216, 270
BlpI GCTNAGC 1 cut(s) 260
BlsI GCNGC 6 cut(s) 154, 169, 172, 175, 217, 271
Bme1390I CCNGG 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 229
BmrI ACTGGG 1 cut(s) 326
BmuI ACTGGG 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 111, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 332
Bse21I CCTNAGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 111, 189
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 3 cut(s) 192, 201, 274
BseNI ACTGG 1 cut(s) 332
BseXI GCAGC 3 cut(s) 179, 202, 256
BshFI GGCC 2 cut(s) 134, 162
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 2 cut(s) 134, 162
Bsp143I GATC 2 cut(s) 59, 294
Bsp1720I GCTNAGC 1 cut(s) 260
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 4 cut(s) 152, 170, 173, 218
BspANI GGCC 2 cut(s) 134, 162
BspCNI CTCAG 3 cut(s) 193, 202, 273
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 2 cut(s) 111, 189
BssMI GATC 2 cut(s) 59, 294
BssT1I CCWWGG 2 cut(s) 111, 189
Bst4CI ACNGT 1 cut(s) 29
BstDEI CTNAG 3 cut(s) 201, 210, 260
BstDSI CCRYGG 1 cut(s) 189
BstKTI GATC 2 cut(s) 62, 297
BstMBI GATC 2 cut(s) 59, 294
BstMWI GCNNNNNNNGC 3 cut(s) 173, 182, 215
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 227
BstV1I GCAGC 3 cut(s) 179, 202, 256
BstV2I GAAGAC 1 cut(s) 216
Bsu36I CCTNAGG 1 cut(s) 201
BsuRI GGCC 2 cut(s) 134, 162
BtgI CCRYGG 1 cut(s) 189
CviAII CATG 2 cut(s) 118, 190
DdeI CTNAG 3 cut(s) 201, 210, 260
DpnI GATC 2 cut(s) 61, 296
DpnII GATC 2 cut(s) 59, 294
Eco130I CCWWGG 2 cut(s) 111, 189
Eco147I AGGCCT 2 cut(s) 134, 162
Eco81I CCTNAGG 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 111, 189
ErhI CCWWGG 2 cut(s) 111, 189
FaeI CATG 2 cut(s) 121, 193
FaiI YATR 2 cut(s) 119, 191
FatI CATG 2 cut(s) 117, 189
FauI CCCGC 1 cut(s) 211
Fnu4HI GCNGC 6 cut(s) 153, 168, 171, 174, 216, 270
Fsp4HI GCNGC 6 cut(s) 153, 168, 171, 174, 216, 270
FspBI CTAG 1 cut(s) 164
GluI GCNGC 6 cut(s) 153, 168, 171, 174, 216, 270
HaeIII GGCC 2 cut(s) 134, 162
HapII CCGG 1 cut(s) 228
Hin1II CATG 2 cut(s) 121, 193
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 182, 215
HpyF3I CTNAG 3 cut(s) 201, 210, 260
Hsp92II CATG 2 cut(s) 121, 193
Kzo9I GATC 2 cut(s) 59, 294
LpnPI CCDG 5 cut(s) 75, 144, 213, 241, 258
Lsp1109I GCAGC 3 cut(s) 179, 202, 256
MaeI CTAG 1 cut(s) 164
MalI GATC 2 cut(s) 61, 296
MboI GATC 2 cut(s) 59, 294
MboII GAAGA 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 5 cut(s) 124, 145, 196, 196, 205
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 2 cut(s) 32, 336
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 229
MwoI GCNNNNNNNGC 3 cut(s) 173, 182, 215
NciI CCSGG 1 cut(s) 229
NcoI CCATGG 1 cut(s) 189
NdeII GATC 2 cut(s) 59, 294
NlaIII CATG 2 cut(s) 121, 193
NspI RCATGY 1 cut(s) 121
PceI AGGCCT 2 cut(s) 134, 162
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 6 cut(s) 154, 169, 172, 175, 217, 271
SaqAI TTAA 2 cut(s) 32, 336
SatI GCNGC 6 cut(s) 153, 168, 171, 174, 216, 270
Sau3AI GATC 2 cut(s) 59, 294
ScrFI CCNGG 1 cut(s) 229
SetI ASST 3 cut(s) 91, 129, 207
SseBI AGGCCT 2 cut(s) 134, 162
SsiI CCGC 4 cut(s) 152, 170, 173, 218
SspMI CTAG 1 cut(s) 164
StuI AGGCCT 2 cut(s) 134, 162
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 2 cut(s) 111, 189
TaaI ACNGT 1 cut(s) 29
TauI GCSGC 3 cut(s) 155, 173, 176
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 32, 336
Tru9I TTAA 2 cut(s) 32, 336
TseI GCWGC 3 cut(s) 167, 215, 269
XceI RCATGY 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.