pycom15g04980

Ultraviolet-B-repressible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0005636
Physical Location & Seq
Reverse (-)
2988780 .. 2989148
369 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g04980.1

Sequence Viewer

Length: 369 bp
ATGGCTTCTGCTTCAATGGCCATGCCACTAATGTCTTCCATCCAAAACAGATTAACCCAAAACGTAGAAGCACTTTTCAAATCAGTCCCATTGAAGTCATCAAAGAAAGCTGCTTTTGTGAAGCCAAAGCCCAAGGGCACGTTCAAGGTGGAGGCCTCTTTGAAAGAAAAGGCGGCGACGGGCCTAGCAGCTGCGGCATTGACAGCCTCCATGGTGATTCCTGAGGTGGCTGAGGCTGCAGGGACTTCTGGGCTTACGCCGTCTTTGAACAACTTCTTGCTCAGCATTGCTGCTGGTGGAGTTGTGCTTGTAGTGATCATAGGTGTTGTTGCTGGGGTTTCCAACTTCGACCCAGTTAAGAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbX

Protein Analysis

123

Amino Acids

12.4

Weight (kDa)

10.08

Isoelectric Point (pI)

21.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbX PF06596 86 - 121 8.3e-15 Photosystem II reaction centre X protein (PsbX)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 173, 194
AcoI YGGCCR 1 cut(s) 18
AgsI TTSAA 6 cut(s) 15, 79, 94, 145, 163, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 2 cut(s) 110, 191
AluI AGCT 2 cut(s) 110, 191
AoxI GGCC 3 cut(s) 18, 153, 181
ApeKI GCWGC 5 cut(s) 110, 188, 191, 236, 290
Asp700I GAANNNNTTC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 226
AxyI CCTNAGG 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 140
BalI TGGCCA 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 27
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 5 cut(s) 97, 178, 200, 223, 277
BccI CCATC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 244
BclI TGATCA 1 cut(s) 315
BfaI CTAG 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 7 cut(s) 111, 174, 189, 192, 195, 237, 291
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 7 cut(s) 112, 175, 190, 193, 196, 238, 292
BmgT120I GGNCC 1 cut(s) 181
BmrI ACTGGG 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 132, 210
Bse1I ACTGG 1 cut(s) 353
Bse21I CCTNAGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 132, 210
BseGI GGATG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 3 cut(s) 213, 222, 295
BseNI ACTGG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 5 cut(s) 97, 178, 200, 223, 277
BseYI CCCAGC 1 cut(s) 332
BshFI GGCC 3 cut(s) 20, 155, 183
BslFI GGGAC 2 cut(s) 71, 256
BsmFI GGGAC 2 cut(s) 71, 256
BsnI GGCC 3 cut(s) 20, 155, 183
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 315
Bsp1720I GCTNAGC 1 cut(s) 281
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 2 cut(s) 173, 194
BspANI GGCC 3 cut(s) 20, 155, 183
BspCNI CTCAG 3 cut(s) 214, 223, 294
BspMAI CTGCAG 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 132, 210
BssMI GATC 1 cut(s) 315
BssT1I CCWWGG 2 cut(s) 132, 210
BstDEI CTNAG 3 cut(s) 222, 231, 281
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 39
BstKTI GATC 1 cut(s) 318
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 4 cut(s) 17, 194, 203, 236
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 140
BstV1I GCAGC 5 cut(s) 97, 178, 200, 223, 277
BstV2I GAAGAC 1 cut(s) 27
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 3 cut(s) 20, 155, 183
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 181
CviAII CATG 2 cut(s) 22, 211
DdeI CTNAG 3 cut(s) 222, 231, 281
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 18
Eco130I CCWWGG 2 cut(s) 132, 210
Eco147I AGGCCT 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 222
EcoT14I CCWWGG 2 cut(s) 132, 210
ErhI CCWWGG 2 cut(s) 132, 210
FaeI CATG 2 cut(s) 25, 214
FaiI YATR 3 cut(s) 23, 212, 320
FaqI GGGAC 2 cut(s) 71, 256
FatI CATG 2 cut(s) 21, 210
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 7 cut(s) 111, 174, 189, 192, 195, 237, 291
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 7 cut(s) 111, 174, 189, 192, 195, 237, 291
FspBI CTAG 1 cut(s) 185
GluI GCNGC 7 cut(s) 111, 174, 189, 192, 195, 237, 291
GsaI CCCAGC 1 cut(s) 336
HaeIII GGCC 3 cut(s) 20, 155, 183
Hin1II CATG 2 cut(s) 25, 214
HinfI GANTC 1 cut(s) 217
HphI GGTGA 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 181
HpyCH4IV ACGT 2 cut(s) 63, 140
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 194, 203, 236
HpyF3I CTNAG 3 cut(s) 222, 231, 281
HpySE526I ACGT 2 cut(s) 63, 140
Hsp92II CATG 2 cut(s) 25, 214
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 1 cut(s) 315
LpnPI CCDG 5 cut(s) 225, 234, 234, 279, 318
Lsp1109I GCAGC 5 cut(s) 97, 178, 200, 223, 277
MaeI CTAG 1 cut(s) 185
MaeII ACGT 2 cut(s) 63, 140
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 140
MlsI TGGCCA 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 5 cut(s) 145, 166, 217, 217, 226
Mox20I TGGCCA 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 272
MscI TGGCCA 1 cut(s) 20
MseI TTAA 2 cut(s) 53, 357
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 17, 194, 203, 236
NcoI CCATGG 1 cut(s) 210
NdeII GATC 1 cut(s) 315
NlaIII CATG 2 cut(s) 25, 214
PceI AGGCCT 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 7 cut(s) 112, 175, 190, 193, 196, 238, 292
PspFI CCCAGC 1 cut(s) 332
PspPI GGNCC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 191
SaqAI TTAA 2 cut(s) 53, 357
SatI GCNGC 7 cut(s) 111, 174, 189, 192, 195, 237, 291
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 140
SetI ASST 7 cut(s) 66, 112, 143, 150, 193, 228, 325
SfcI CTRYAG 1 cut(s) 237
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 2 cut(s) 173, 194
SspMI CTAG 1 cut(s) 185
StuI AGGCCT 1 cut(s) 155
StyI CCWWGG 2 cut(s) 132, 210
TaiI ACGT 2 cut(s) 66, 143
TaqI TCGA 1 cut(s) 348
TauI GCSGC 2 cut(s) 176, 197
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 53, 357
Tru9I TTAA 2 cut(s) 53, 357
TseI GCWGC 5 cut(s) 110, 188, 191, 236, 290
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.