RLG00000016481

Photosystem II reaction centre X protein (PsbX)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005636
Physical Location & Seq
Forward (+)
6990841 .. 6991212
372 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016481

Sequence Viewer

Length: 372 bp
ATGGCTTCAAGCTCAGCAGTTACAATGGCTATGCCATTGCCCAATGCCACCACCCAAAAGAGGGTGGTTCAATCCTCAGAGGCCTTCTACAAGCCACTACCCCTCAGGCCCTCGAAGGCTGTGTCCTCGCCATCAAGATCAAGTGGAAGACTTGAGGTCAGGGCTTCCCTGAAGGAGAAGGCCATCACCGCAATCACCGCCGCCGCACTCACCGCCTCGATGGTGGTCCCGGACGCAGCGGAAGCCGCGTCTGGAGTCTCTCCATCGCTCAAGAACTTCTTACTCAGCATTGCTGCCGGCGGCACTGTACTTATTGTGCTTATTGGAGCTGTAATCGGAGTGTCCAATTTCGACCCTGTCAAGAGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbX

Protein Analysis

124

Amino Acids

12.51

Weight (kDa)

10.43

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbX PF06596 86 - 122 1.7e-15 Photosystem II reaction centre X protein (PsbX)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 248
AciI CCGC 8 cut(s) 189, 198, 201, 204, 213, 239, 246, 300
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 60, 61
AgsI TTSAA 2 cut(s) 9, 71
AhdI GACNNNNNGTC 1 cut(s) 155
AluBI AGCT 2 cut(s) 12, 329
AluI AGCT 2 cut(s) 12, 329
Alw26I GTCTC 1 cut(s) 262
AoxI GGCC 3 cut(s) 81, 107, 180
ApeKI GCWGC 2 cut(s) 236, 293
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspS9I GGNCC 2 cut(s) 108, 226
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 178, 187, 202
AvaII GGWCC 1 cut(s) 226
AxyI CCTNAGG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 248, 280
BccI CCATC 4 cut(s) 139, 191, 214, 271
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 262
BisI GCNGC 6 cut(s) 201, 204, 237, 246, 294, 301
BlpI GCTNAGC 1 cut(s) 13
BlsI GCNGC 6 cut(s) 202, 205, 238, 247, 295, 302
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 226
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 108, 226
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 13
BpuEI CTTGAG 2 cut(s) 173, 254
BpuMI CCSGG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 61
Bse118I RCCGGY 1 cut(s) 296
Bse21I CCTNAGG 1 cut(s) 104
Bse3DI GCAATG 2 cut(s) 35, 288
BseLI CCNNNNNNNGG 2 cut(s) 60, 61
BseMI GCAATG 2 cut(s) 35, 288
BseMII CTCAG 4 cut(s) 27, 90, 118, 298
BseXI GCAGC 2 cut(s) 248, 280
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 3 cut(s) 83, 109, 182
BsiSI CCGG 2 cut(s) 230, 297
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 60, 61
BsmAI GTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 3 cut(s) 83, 109, 182
Bsp143I GATC 1 cut(s) 137
Bsp1720I GCTNAGC 1 cut(s) 13
BspACI CCGC 8 cut(s) 189, 198, 201, 204, 213, 239, 246, 300
BspANI GGCC 3 cut(s) 83, 109, 182
BspCNI CTCAG 4 cut(s) 26, 89, 117, 297
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 228
BsrDI GCAATG 2 cut(s) 35, 288
BsrFI RCCGGY 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 296
BssMI GATC 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 4 cut(s) 13, 76, 104, 284
BstFNI CGCG 1 cut(s) 248
BstKTI GATC 1 cut(s) 140
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 5 cut(s) 188, 197, 212, 242, 245
BstSCI CCNGG 1 cut(s) 228
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 2 cut(s) 248, 280
BstV2I GAAGAC 1 cut(s) 154
Bsu36I CCTNAGG 1 cut(s) 104
BsuRI GGCC 3 cut(s) 83, 109, 182
BtgZI GCGATG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 108, 226
CseI GACGC 2 cut(s) 237, 242
Csp6I GTAC 1 cut(s) 308
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 4 cut(s) 13, 76, 104, 284
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
DriI GACNNNNNGTC 1 cut(s) 155
Eam1105I GACNNNNNGTC 1 cut(s) 155
Eco147I AGGCCT 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 191
Eco81I CCTNAGG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 108
FaiI YATR 1 cut(s) 32
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 212
Fnu4HI GCNGC 6 cut(s) 201, 204, 237, 246, 294, 301
Fsp4HI GCNGC 6 cut(s) 201, 204, 237, 246, 294, 301
GluI GCNGC 6 cut(s) 201, 204, 237, 246, 294, 301
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 3 cut(s) 83, 109, 182
HapII CCGG 2 cut(s) 230, 297
HgaI GACGC 2 cut(s) 237, 242
HinfI GANTC 1 cut(s) 255
HpaII CCGG 2 cut(s) 230, 297
HphI GGTGA 3 cut(s) 178, 187, 202
Hpy188I TCNGA 2 cut(s) 79, 338
Hpy188III TCNNGA 4 cut(s) 135, 252, 271, 361
HpyAV CCTTC 4 cut(s) 94, 109, 166, 172
HpyCH4III ACNGT 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 197, 212, 242, 245
HpyF3I CTNAG 4 cut(s) 13, 76, 104, 284
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Kzo9I GATC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 6 cut(s) 91, 145, 182, 237, 243, 310
Lsp1109I GCAGC 2 cut(s) 248, 280
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 1 cut(s) 159
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 9 cut(s) 54, 73, 85, 113, 121, 136, 148, 226, 357
MroNI GCCGGC 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 2 cut(s) 230, 297
MspR9I CCNGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 5 cut(s) 188, 197, 212, 242, 245
NaeI GCCGGC 1 cut(s) 298
NciI CCSGG 1 cut(s) 230
NdeII GATC 1 cut(s) 137
NgoMIV GCCGGC 1 cut(s) 296
NlaIV GGNNCC 1 cut(s) 228
PceI AGGCCT 1 cut(s) 83
PdiI GCCGGC 1 cut(s) 298
PflFI GACNNNGTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 228
PkrI GCNGC 6 cut(s) 202, 205, 238, 247, 295, 302
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 108, 226
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SatI GCNGC 6 cut(s) 201, 204, 237, 246, 294, 301
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 2 cut(s) 108, 226
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 230
SetI ASST 3 cut(s) 14, 159, 331
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 2 cut(s) 152, 269
SmoI CTYRAG 2 cut(s) 152, 269
Sse9I AATT 1 cut(s) 346
SseBI AGGCCT 1 cut(s) 83
SsiI CCGC 8 cut(s) 189, 198, 201, 204, 213, 239, 246, 300
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 3 cut(s) 113, 218, 351
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 307
TauI GCSGC 4 cut(s) 203, 206, 248, 303
TscAI CASTG 1 cut(s) 310
TseI GCWGC 2 cut(s) 236, 293
TspRI CASTG 1 cut(s) 310
Tth111I GACNNNGTC 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.