Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006117

Physical Location & Seq

Genomic Coordinates Reverse (-)

6830995 .. 6833777

Gene Structure 2783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G15690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1740 bp

ATGTCTTCTCTAATGGCCATTCGTTGCGCACGAACCCAGAATATCGTCACAATCGGCTCTCTCCTTCAGTTACGTTCTTCATTTCCCAGACTCTCCTCTCAATTCCACTTCTCCGGTACCCTAAACTCAATTCCGATCAAACACCTAAGCACATCCGCCGCCGCAAACGATTACCACCAGAATCCTCAATCTGGATCACCGTCTCAGCATCAACGCCCATATCCACCTCAAAGCTTCGATTCTCAGAATCAGACCAACACTAATCAACGAGTTCCACAAAGCCCTAATCAATGGTCTACTCAACACGGTGGTCAAATACCTCAATACGGTGGTCAAAATCCTCAACACGGGGGTCAAAGGCCTCCATACGGTGGTCAAAATCCTCAACAAGGTGGTCAAATGTCTCAATACGGTGGTCACAATCCTCAACACGGTGGTCACAGGCCTCAGTACGGTGGTCAGAGGCCTCAATACGGTGGACCTGGTAACAATTATCAGAATCAGAATGTTCAACAAAGTAATCAGAGTCAGTACTACACTCCGCAGCAGCAGCAACAACCGCAACCACCACGAAGCTCGAATCAAAGCCCTAATCAGATGAATGAGGTAGCTCCTCCTCCTAGTGTTGAAGAGGTGATGAGGTTATGTCAGCGTAGGCTATATAAAGATGCTATTGAATTGCTTGATAAAGGAGCTATGCCTGATAGAGAATGTTTCGTTTTGTTGTTTGAGTCTTGTGCGAATTTGAAGTCGCTTGAGCATTCTAAGAAGGTACATGATCATTTCCTTCAGTCTAAGTTTAGAGGTGATCCAAAACTTAACAATATGGTGATTAGTATGTTTGGAGAGTGTAGTAGTATTACTGATGCTAAGAGAGTGTTTGATCATATGGTTGATAAAGATATGGATTCTTGGCATTTGATGATGTGTGCGTATAGTGATAACGGAATGGGAGATGATGCGTTGCATTTGTTCGAAGAGATGACGAAACATGGGTTGAAGCCGAACGAGGAGACTTTCCTTACGGTCTTCTTGGCTTGTGCTACTGTTGGTGGTATAGAAGAAGCGTTTTTGCATTTTGATTCGATGAAGAACGAGCATGGGATTAGTCCGAAGACAGAGCATTATTTGGGTGTTTTAGGTGTTCTTGGGAAATGTGGACATCTTGTTGAGGCTGAGCAATATATCCGTGATCTTCCGTTTGAACCCACAGCTGATTTCTGGGAGGCTATGCGGAACTATGCTCGGTTACATGGTGATATCGATTTAGAGGATTACATGGAGGAATTGATGGTTGATGTTGATCCTTCAAAGGCTGTAATCAACAAAATTCCTACTCCTCCACCTAAATCATTCAAGGAAACAAATATGGTTACTAGTAAGAGTAGGATCCTTGAGTTTCGAAATCTGACTTTCTACAAGGATGAAGCAAAGGAGATGGCTGCAAAGAAAGGAGTGGTTTATGTTCCTGACACACGGTTTGTGCTTCATGATATCGATCAAGAGGCTAAAGAACAGGCACTACTCTACCACAGTGAGAGGTTAGCGATTGCTTATGGTATCATATGCACCCCACCAAGGAAGACCCTAACAATCATCAAGAATCTCCGTGTGTGTGGGGATTGTCACAACTTTATCAAGATCATGTCCAAAATCATTGGTAGGGTGTTGATCGTGAGAGACAACAAACGTTTCCATCACTTCAAAGACGGTAAATGTTCTTGCGGGGATTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

579

Amino Acids

65.61

Weight (kDa)

7.13

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	304 - 348	2.9e-09	PPR repeat family
PPR	PF01535	304 - 333	9.5e-06	PPR repeat
DYW_deaminase	PF14432	488 - 579	3.1e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15690
fragaria_vesca	FvH4_2g06150
malus_domestica	MD05G1080000.v1.1
prunus_persica	Prupe.8G123800_v2.0.a1
pyrus_communis	pycom05g07310 pycom10g07740
rosa_chinensis	RchiOBHm_Chr6g0257041 RchiOBHm_Chr7g0228581
rosa_laevigata	RLG00000001553 RLG00000014672
rosa_multiflora	Rmu_sc0008871.1_g000003 Rmu_sc0011334.1_g000001 Rmu_sc0019183.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231050 Rroxscaffold_7G00208450
rosa_rugosa	Rorug05G0575600 Rorug07G0250600
rosa_samantha	Rh6AG093700 Rh6BG084500 Rh6CG081200 Rh6DG076600 Rh7AG402800 Rh7BG383700 Rh7CG422100 Rh7DG398500
rosa_wichuraiana	Rw6G008060 Rw7G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	28
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	7 cut(s)	156, 159, 162, 542, 560, 1234, 1725
AclI	AACGTT	1 cut(s)	1690
AclWI	GGATC	5 cut(s)	202, 803, 1298, 1384, 1397
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	742, 1329
AcuI	CTGAAG	2 cut(s)	50, 773
AfaI	GTAC	4 cut(s)	118, 452, 533, 774
AgsI	TTSAA	9 cut(s)	512, 629, 677, 748, 1000, 1205, 1311, 1357, 1705
AhlI	ACTAGT	1 cut(s)	1376
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	5 cut(s)	234, 576, 611, 695, 1214
AluI	AGCT	5 cut(s)	234, 576, 611, 695, 1214
Alw26I	GTCTC	4 cut(s)	207, 408, 1007, 1674
AlwI	GGATC	5 cut(s)	202, 803, 1298, 1384, 1397
AoxI	GGCC	4 cut(s)	15, 359, 443, 464
ApeKI	GCWGC	4 cut(s)	544, 547, 550, 1442
ApoI	RAATTY	2 cut(s)	742, 1329
ArsI	GACNNNNNNTTYG	4 cut(s)	734, 766, 1463, 1495
Asp718I	GGTACC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	5 cut(s)	189, 646, 818, 841, 1268
AsuII	TTCGAA	2 cut(s)	975, 1402
AvaII	GGWCC	1 cut(s)	479
BalI	TGGCCA	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	1389
BanI	GGYRCC	1 cut(s)	116
BbsI	GAAGAC	3 cut(s)	1021, 1121, 1589
BbvI	GCAGC	4 cut(s)	556, 559, 562, 1429
BccI	CCATC	3 cut(s)	1285, 1432, 1704
BciT130I	CCWGG	1 cut(s)	483
BclI	TGATCA	2 cut(s)	778, 883
BcoDI	GTCTC	4 cut(s)	207, 408, 1007, 1674
BcuI	ACTAGT	1 cut(s)	1376
BfaI	CTAG	2 cut(s)	621, 1377
BisI	GCNGC	6 cut(s)	159, 162, 545, 548, 551, 1443
BlpI	GCTNAGC	1 cut(s)	1176
BlsI	GCNGC	6 cut(s)	160, 163, 546, 549, 552, 1444
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	118, 1391
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	4 cut(s)	217, 658, 856, 949
BpiI	GAAGAC	3 cut(s)	1021, 1121, 1589
Bpu10I	CCTNAGC	1 cut(s)	146
Bpu1102I	GCTNAGC	1 cut(s)	1176
Bpu14I	TTCGAA	2 cut(s)	975, 1402
BpuEI	CTTGAG	2 cut(s)	776, 1415
Bsa29I	ATCGAT	2 cut(s)	1263, 1497
BsaBI	GATNNNNATC	2 cut(s)	1302, 1497
BsaJI	CCNNGG	1 cut(s)	1577
BsaWI	WCCGGW	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	1739
Bse8I	GATNNNNATC	2 cut(s)	1302, 1497
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	2 cut(s)	1263, 1497
BseDI	CCNNGG	1 cut(s)	1577
BseGI	GGATG	2 cut(s)	152, 1429
BseJI	GATNNNNATC	2 cut(s)	1302, 1497
BseMII	CTCAG	4 cut(s)	218, 257, 461, 1167
BseNI	ACTGG	1 cut(s)	1739
BseRI	GAGGAG	5 cut(s)	85, 603, 606, 1025, 1329
BseXI	GCAGC	4 cut(s)	556, 559, 562, 1429
BshFI	GGCC	4 cut(s)	17, 361, 445, 466
BshNI	GGYRCC	1 cut(s)	116
BshVI	ATCGAT	2 cut(s)	1263, 1497
BsiSI	CCGG	1 cut(s)	114
BsmAI	GTCTC	4 cut(s)	207, 408, 1007, 1674
BsmBI	CGTCTC	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	4 cut(s)	17, 361, 445, 466
Bsp119I	TTCGAA	2 cut(s)	975, 1402
Bsp1720I	GCTNAGC	1 cut(s)	1176
BspACI	CCGC	7 cut(s)	156, 159, 162, 542, 560, 1234, 1725
BspANI	GGCC	4 cut(s)	17, 361, 445, 466
BspCNI	CTCAG	4 cut(s)	217, 256, 460, 1168
BspDI	ATCGAT	2 cut(s)	1263, 1497
BspHI	TCATGA	1 cut(s)	1489
BspLI	GGNNCC	2 cut(s)	118, 1391
BspPI	GGATC	5 cut(s)	202, 803, 1298, 1384, 1397
BspT104I	TTCGAA	2 cut(s)	975, 1402
BspT107I	GGYRCC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	1739
BssECI	CCNNGG	1 cut(s)	1577
BssT1I	CCWWGG	1 cut(s)	1577
Bst2UI	CCWGG	1 cut(s)	483
Bst6I	CTCTTC	2 cut(s)	624, 972
BstBI	TTCGAA	2 cut(s)	975, 1402
BstDEI	CTNAG	8 cut(s)	146, 204, 243, 447, 765, 795, 870, 1176
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	2 cut(s)	152, 1429
BstHHI	GCGC	1 cut(s)	29
BstMAI	GTCTC	4 cut(s)	207, 408, 1007, 1674
BstMWI	GCNNNNNNNGC	2 cut(s)	550, 559
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstV1I	GCAGC	4 cut(s)	556, 559, 562, 1429
BstV2I	GAAGAC	3 cut(s)	1021, 1121, 1589
BstX2I	RGATCY	1 cut(s)	1389
BstYI	RGATCY	1 cut(s)	1389
Bsu15I	ATCGAT	2 cut(s)	1263, 1497
BsuRI	GGCC	4 cut(s)	17, 361, 445, 466
BsuTUI	ATCGAT	2 cut(s)	1263, 1497
BtsCI	GGATG	2 cut(s)	152, 1429
BtsIMutI	CAGTG	1 cut(s)	1540
CciI	TCATGA	1 cut(s)	1489
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	479
ClaI	ATCGAT	2 cut(s)	1263, 1497
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	4 cut(s)	117, 451, 532, 773
CviAII	CATG	7 cut(s)	776, 992, 1100, 1253, 1279, 1490, 1645
CviQI	GTAC	4 cut(s)	117, 451, 532, 773
DdeI	CTNAG	8 cut(s)	146, 204, 243, 447, 765, 795, 870, 1176
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	624, 972
EarI	CTCTTC	2 cut(s)	624, 972
EciI	GGCGGA	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	1577
Eco147I	AGGCCT	3 cut(s)	361, 445, 466
Eco32I	GATATC	2 cut(s)	1261, 1495
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	2 cut(s)	50, 773
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	481
EcoRV	GATATC	2 cut(s)	1261, 1495
EcoT14I	CCWWGG	1 cut(s)	1577
ErhI	CCWWGG	1 cut(s)	1577
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	7 cut(s)	779, 995, 1103, 1256, 1282, 1493, 1648
FatI	CATG	7 cut(s)	775, 991, 1099, 1252, 1278, 1489, 1644
FauI	CCCGC	1 cut(s)	1718
FauNDI	CATATG	2 cut(s)	888, 1565
FbaI	TGATCA	2 cut(s)	778, 883
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	6 cut(s)	159, 162, 545, 548, 551, 1443
FokI	GGATG	2 cut(s)	139, 1436
Fsp4HI	GCNGC	6 cut(s)	159, 162, 545, 548, 551, 1443
FspBI	CTAG	2 cut(s)	621, 1377
FspI	TGCGCA	1 cut(s)	28
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	6 cut(s)	159, 162, 545, 548, 551, 1443
HaeIII	GGCC	4 cut(s)	17, 361, 445, 466
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	7 cut(s)	779, 995, 1103, 1256, 1282, 1493, 1648
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	232
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	5 cut(s)	189, 646, 818, 841, 1268
Hpy166II	GTNNAC	3 cut(s)	297, 479, 1160
Hpy188III	TCNNGA	7 cut(s)	192, 1469, 1490, 1502, 1600, 1639, 1675
Hpy8I	GTNNAC	3 cut(s)	297, 479, 1160
HpyAV	CCTTC	4 cut(s)	74, 763, 797, 1317
HpyCH4IV	ACGT	2 cut(s)	73, 1690
HpyCH4V	TGCA	4 cut(s)	967, 1075, 1445, 1569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	550, 559
HpyF3I	CTNAG	8 cut(s)	146, 204, 243, 447, 765, 795, 870, 1176
HpySE526I	ACGT	2 cut(s)	73, 1690
Hsp92II	CATG	7 cut(s)	779, 995, 1103, 1256, 1282, 1493, 1648
HspAI	GCGC	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	120
Ksp22I	TGATCA	2 cut(s)	778, 883
LmnI	GCTCC	2 cut(s)	616, 692
Lsp1109I	GCAGC	4 cut(s)	556, 559, 562, 1429
LweI	GCATC	4 cut(s)	217, 658, 856, 949
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	2 cut(s)	621, 1377
MaeII	ACGT	2 cut(s)	73, 1690
MaeIII	GTNAC	8 cut(s)	46, 69, 416, 437, 485, 1248, 1372, 1625
MboII	GAAGA	9 cut(s)	69, 641, 989, 1021, 1073, 1102, 1126, 1187, 1594
MflI	RGATCY	1 cut(s)	1389
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	7 cut(s)	101, 129, 490, 677, 742, 1286, 1329
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	3 cut(s)	84, 535, 740
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	1 cut(s)	819
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	1214
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	550, 559
NdeI	CATATG	2 cut(s)	888, 1565
NlaIII	CATG	7 cut(s)	779, 995, 1103, 1256, 1282, 1493, 1648
NlaIV	GGNNCC	2 cut(s)	118, 1391
NmuCI	GTSAC	4 cut(s)	46, 416, 437, 1625
NsbI	TGCGCA	1 cut(s)	28
NspV	TTCGAA	2 cut(s)	975, 1402
PagI	TCATGA	1 cut(s)	1489
PceI	AGGCCT	3 cut(s)	361, 445, 466
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	8 cut(s)	181, 239, 247, 499, 580, 908, 1082, 1603
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	6 cut(s)	160, 163, 546, 549, 552, 1444
PleI	GAGTC	3 cut(s)	84, 534, 739
PpsI	GAGTC	3 cut(s)	84, 534, 739
Psp1406I	AACGTT	1 cut(s)	1690
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	118, 1391
PspPI	GGNCC	1 cut(s)	479
PsrI	GAACNNNNNNTAC	2 cut(s)	1506, 1538
PsuI	RGATCY	1 cut(s)	1389
PvuII	CAGCTG	1 cut(s)	1214
RsaI	GTAC	4 cut(s)	118, 452, 533, 774
RsaNI	GTAC	4 cut(s)	117, 451, 532, 773
SaqAI	TTAA	1 cut(s)	819
SatI	GCNGC	6 cut(s)	159, 162, 545, 548, 551, 1443
Sau96I	GGNCC	1 cut(s)	479
ScaI	AGTACT	1 cut(s)	533
SchI	GAGTC	3 cut(s)	84, 535, 740
ScrFI	CCNGG	1 cut(s)	483
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	4 cut(s)	217, 658, 856, 949
SfuI	TTCGAA	2 cut(s)	975, 1402
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	2 cut(s)	755, 1394
SmoI	CTYRAG	2 cut(s)	755, 1394
SpeI	ACTAGT	1 cut(s)	1376
Sse9I	AATT	7 cut(s)	101, 129, 490, 677, 742, 1286, 1329
SseBI	AGGCCT	3 cut(s)	361, 445, 466
SsiI	CCGC	7 cut(s)	156, 159, 162, 542, 560, 1234, 1725
SspMI	CTAG	2 cut(s)	621, 1377
StuI	AGGCCT	3 cut(s)	361, 445, 466
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	1577
TaiI	ACGT	2 cut(s)	76, 1693
TaqI	TCGA	7 cut(s)	237, 578, 975, 1085, 1263, 1402, 1497
TasI	AATT	7 cut(s)	101, 129, 490, 677, 742, 1286, 1329
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	2 cut(s)	161, 164
TfiI	GAWTC	8 cut(s)	181, 239, 247, 499, 580, 908, 1082, 1603
Tru1I	TTAA	1 cut(s)	819
Tru9I	TTAA	1 cut(s)	819
TscAI	CASTG	1 cut(s)	1540
TseFI	GTSAC	4 cut(s)	46, 416, 437, 1625
TseI	GCWGC	4 cut(s)	544, 547, 550, 1442
Tsp45I	GTSAC	4 cut(s)	46, 416, 437, 1625
TspDTI	ATGAA	5 cut(s)	69, 614, 1103, 1440, 1478
TspGWI	ACGGA	4 cut(s)	960, 1178, 1188, 1598
TspRI	CASTG	1 cut(s)	1540
Van91I	CCANNNNNTGG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	479
XagI	CCTNNNNNAGG	1 cut(s)	387
XapI	RAATTY	2 cut(s)	742, 1329
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	2 cut(s)	621, 1377
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.