Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006117

Physical Location & Seq

Genomic Coordinates Forward (+)

17396285 .. 17396925

Gene Structure 641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAAACTGAGTACGGATTTGATCCTGTAGTGGAGCATTATTTGGGGATTCTTGATGTTCATGGAGATATTGATCTTGAAGATCACGCTGAGGAGTTAATGGTTGCTGTTGACCCGTCAAAGGCTGTTGCTGATAAGATTCCAACTCCACCACCTAGAAAGCGTAGTGCTATTTGCATACTTGATGGGAAGAACAGAATCAGTGAGTTTAAAAATCCCACATTGTACAAGGATGATGAAAAGTTAAAGGCTCTCAATTCGATGAGAGGAGGGGGTTATGTTCCAGACACAAGATATGTTCGTCATGATATTGACCAGGAGGCTAAGGAGCAAGCATTGCTCTATCACAGTGAGCGTTTGGCAATCGCAGATGGCCTGATCAGTACTCTAGCAAGGACACCTCTTAGGATCATTAACAACCTCCATGTCTGTGGTGACTGCCACAATGCCATTAAGATCATGTCCAAGATTGTTGGAAGGCAATTAATTGTTAGCGACAACAAACGTTTTCATCATTTTGAGGATGGAAAATGCTCTTGTGGTGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

185

Amino Acids

20.8

Weight (kDa)

6.13

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	92 - 184	2.5e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15690
fragaria_vesca	FvH4_2g06150
malus_domestica	MD05G1080000.v1.1
prunus_persica	Prupe.8G123800_v2.0.a1
pyrus_communis	pycom05g07310 pycom10g07740
rosa_chinensis	RchiOBHm_Chr6g0257041 RchiOBHm_Chr7g0228581
rosa_laevigata	RLG00000001553 RLG00000014672
rosa_multiflora	Rmu_sc0008871.1_g000003 Rmu_sc0011334.1_g000001 Rmu_sc0019183.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231050 Rroxscaffold_7G00208450
rosa_rugosa	Rorug05G0575600 Rorug07G0250600
rosa_samantha	Rh6AG093700 Rh6BG084500 Rh6CG081200 Rh6DG076600 Rh7AG402800 Rh7BG383700 Rh7CG422100 Rh7DG398500
rosa_wichuraiana	Rw6G008060 Rw7G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	505
AclWI	GGATC	2 cut(s)	17, 416
AfaI	GTAC	3 cut(s)	14, 227, 385
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	315
AlwI	GGATC	2 cut(s)	17, 416
AoxI	GGCC	1 cut(s)	373
AseI	ATTAAT	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	446, 554
BbvCI	CCTCAGC	1 cut(s)	90
BccI	CCATC	3 cut(s)	179, 365, 518
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	1 cut(s)	378
BfaI	CTAG	2 cut(s)	156, 389
BfmI	CTRYAG	1 cut(s)	27
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	317
Bpu10I	CCTNAGC	2 cut(s)	90, 324
BsaBI	GATNNNNATC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	238, 529
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	81
BseRI	GAGGAG	2 cut(s)	107, 282
BshFI	GGCC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	121
BsnI	GGCC	1 cut(s)	375
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	6 cut(s)	22, 73, 82, 378, 408, 456
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	304
BspPI	GGATC	2 cut(s)	17, 416
BsrDI	GCAATG	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	225
BssMI	GATC	6 cut(s)	22, 73, 82, 378, 408, 456
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstAUI	TGTACA	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	4 cut(s)	9, 90, 324, 404
BstF5I	GGATG	2 cut(s)	238, 529
BstKTI	GATC	6 cut(s)	25, 76, 85, 381, 411, 459
BstMBI	GATC	6 cut(s)	22, 73, 82, 378, 408, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	238, 529
BtsIMutI	CAGTG	2 cut(s)	208, 355
Cac8I	GCNNGC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	304
Csp6I	GTAC	3 cut(s)	13, 226, 384
CviAII	CATG	4 cut(s)	62, 305, 425, 460
CviJI	RGCY	4 cut(s)	125, 251, 323, 375
CviKI_1	RGCY	4 cut(s)	125, 251, 323, 375
CviQI	GTAC	3 cut(s)	13, 226, 384
DdeI	CTNAG	4 cut(s)	9, 90, 324, 404
DpnI	GATC	6 cut(s)	24, 75, 84, 380, 410, 458
DpnII	GATC	6 cut(s)	22, 73, 82, 378, 408, 456
DraI	TTTAAA	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	315
FaeI	CATG	4 cut(s)	65, 308, 428, 463
FaiI	YATR	7 cut(s)	63, 179, 279, 297, 306, 426, 461
FatI	CATG	4 cut(s)	61, 304, 424, 459
FbaI	TGATCA	1 cut(s)	378
FokI	GGATG	2 cut(s)	245, 536
FspBI	CTAG	2 cut(s)	156, 389
HaeIII	GGCC	1 cut(s)	375
Hin1II	CATG	4 cut(s)	65, 308, 428, 463
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	3 cut(s)	49, 139, 198
HphI	GGTGA	2 cut(s)	446, 554
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188III	TCNNGA	4 cut(s)	53, 77, 284, 305
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	471
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	4 cut(s)	9, 90, 324, 404
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	4 cut(s)	65, 308, 428, 463
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	6 cut(s)	22, 73, 82, 378, 408, 456
LmnI	GCTCC	2 cut(s)	34, 328
LpnPI	CCDG	5 cut(s)	39, 297, 302, 329, 389
MaeI	CTAG	2 cut(s)	156, 389
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	6 cut(s)	24, 75, 84, 380, 410, 458
MboI	GATC	6 cut(s)	22, 73, 82, 378, 408, 456
MboII	GAAGA	2 cut(s)	92, 202
MluCI	AATT	3 cut(s)	256, 482, 486
MmeI	TCCRAC	2 cut(s)	167, 454
MnlI	CCTC	7 cut(s)	85, 260, 263, 313, 411, 431, 514
MseI	TTAA	6 cut(s)	98, 210, 245, 414, 453, 485
MslI	CAYNNNNRTG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	337
NdeII	GATC	6 cut(s)	22, 73, 82, 378, 408, 456
NlaIII	CATG	4 cut(s)	65, 308, 428, 463
NmuCI	GTSAC	1 cut(s)	434
PagI	TCATGA	1 cut(s)	304
PfeI	GAWTC	3 cut(s)	49, 139, 198
PshBI	ATTAAT	1 cut(s)	485
Psp1406I	AACGTT	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
RsaI	GTAC	3 cut(s)	14, 227, 385
RsaNI	GTAC	3 cut(s)	13, 226, 384
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	6 cut(s)	98, 210, 245, 414, 453, 485
Sau3AI	GATC	6 cut(s)	22, 73, 82, 378, 408, 456
ScaI	AGTACT	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	4 cut(s)	157, 403, 423, 508
SfcI	CTRYAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	429
Sse9I	AATT	3 cut(s)	256, 482, 486
SspMI	CTAG	2 cut(s)	156, 389
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	1 cut(s)	260
TasI	AATT	3 cut(s)	256, 482, 486
TatI	WGTACW	2 cut(s)	225, 383
TfiI	GAWTC	3 cut(s)	49, 139, 198
Tru1I	TTAA	6 cut(s)	98, 210, 245, 414, 453, 485
Tru9I	TTAA	6 cut(s)	98, 210, 245, 414, 453, 485
TscAI	CASTG	2 cut(s)	208, 355
TseFI	GTSAC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	4 cut(s)	17, 50, 252, 500
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	208, 355
VspI	ATTAAT	1 cut(s)	485
XspI	CTAG	2 cut(s)	156, 389
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.