Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006117

Physical Location & Seq

Genomic Coordinates Reverse (-)

54571012 .. 54575278

Gene Structure 4267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG422100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGCAAAGAAGGGGTGAAGGCTGATGCTGATTGTTTTCATTCTTTGTTTGAGTTGTGTGGGAATTCGAAGTCGCTAGAGAATGCAAAGAAAGTTCATGATTTCTTTTTGCAGTCTACATGTAGGGGTAATAGGGACTTGAGCCATAAAGTAATCGAAATGTATGGAAATTGTGGAAGCATGACTGATGCCAGGAGAGTGTTTGATCACCTGCTTGAGAAGAACATTGATTCTTGGCATTTGATGATAAACTGGTATGCGGAGAACGGGTTAGGGGATGATGGGTTGAACATGTTTGAGTCGATGAGGGAGCAAGGTTTGAAACCCAATTCGGAAACATTCCTTGCAGTCTTTTCGGCTTGTGCCAGTGCAGATGCTGTTGAAGAAGCATTTATACATTTTGAGTCGATGAAAACTGATTACGGATTTGATCCTGTAGTGGAGCATTATTTGGGGATTCTTGATGTACTTGGAAAATGCGGTCATCTGAATGAAGCAGTTGATTATATTGAGAAGCTCCCATTTGAGCCGACTGTGACAGTTTGGGAGGCATTGAGGAATTATGCCCAGGTTCATGGAGATATTGATCTTGAAGATCACGCTGAGGAGTTAATGGTTGCTCTTGACCCGTCAAAGGCTGGTAAGATTCCAACTCCACCACCTAGAAAGCGTAGTGCTATTTGCATGCTTGATGGGAAGAACAGAACCAGTGCGTTTAAAAATCCCACATTGTACAAGGATTGTGAAAAGTTAAAGGCTCTCAATTCGATGAGAGGAGGGGGTTATGTTCCAGACACAAGATATGTTCTTCATGACATTGACCAGGAGGCTAAGGAGCAAGCACTGCTCTATCACAGTGAGCTTTTGGCAATCGCATATGGCCTGATTAGTACTCCGGCAAGACACCTCTTAGGATCATTAACAACCTCCGTGTCTGTGGTGACTGCCACAGTGCCATTAAGATCATGTCCAAGATTGTTGGAAGGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

330

Amino Acids

36.76

Weight (kDa)

5.38

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 122	1.2e-08	PPR repeat family
DYW_deaminase	PF14432	261 - 302	5.2e-10	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15690
fragaria_vesca	FvH4_2g06150
malus_domestica	MD05G1080000.v1.1
prunus_persica	Prupe.8G123800_v2.0.a1
pyrus_communis	pycom05g07310 pycom10g07740
rosa_chinensis	RchiOBHm_Chr6g0257041 RchiOBHm_Chr7g0228581
rosa_laevigata	RLG00000001553 RLG00000014672
rosa_multiflora	Rmu_sc0008871.1_g000003 Rmu_sc0011334.1_g000001 Rmu_sc0019183.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231050 Rroxscaffold_7G00208450
rosa_rugosa	Rorug05G0575600 Rorug07G0250600
rosa_samantha	Rh6AG093700 Rh6BG084500 Rh6CG081200 Rh6DG076600 Rh7AG402800 Rh7BG383700 Rh7CG422100 Rh7DG398500
rosa_wichuraiana	Rw6G008060 Rw7G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	116
AciI	CCGC	2 cut(s)	260, 480
AclWI	GGATC	2 cut(s)	425, 922
AcsI	RAATTY	1 cut(s)	64
AfaI	GTAC	3 cut(s)	468, 734, 892
AfiI	CCNNNNNNNGG	1 cut(s)	634
AflIII	ACRYGT	2 cut(s)	119, 291
AgsI	TTSAA	4 cut(s)	289, 322, 383, 593
AjnI	CCWGG	3 cut(s)	191, 567, 822
AluBI	AGCT	2 cut(s)	517, 862
AluI	AGCT	2 cut(s)	517, 862
AlwI	GGATC	2 cut(s)	425, 922
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	880
ApoI	RAATTY	1 cut(s)	64
AsuHPI	GGTGA	3 cut(s)	28, 200, 952
AsuII	TTCGAA	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbvCI	CCTCAGC	1 cut(s)	603
BccI	CCATC	2 cut(s)	275, 686
BcgI	CGANNNNNNTGC	2 cut(s)	336, 370
BciT130I	CCWGG	3 cut(s)	193, 569, 824
BclI	TGATCA	1 cut(s)	205
BfaI	CTAG	2 cut(s)	77, 663
BfmI	CTRYAG	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	219
BmcAI	AGTACT	1 cut(s)	892
Bme1390I	CCNGG	3 cut(s)	193, 569, 824
BmrFI	CCNGG	3 cut(s)	193, 569, 824
BmsI	GCATC	3 cut(s)	16, 178, 364
Bpu10I	CCTNAGC	2 cut(s)	603, 831
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	160, 236
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse1I	ACTGG	3 cut(s)	257, 366, 708
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	3 cut(s)	193, 569, 824
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	1 cut(s)	283
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	3 cut(s)	257, 366, 708
BseRI	GAGGAG	2 cut(s)	620, 789
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	1 cut(s)	882
BsiSI	CCGG	1 cut(s)	896
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	882
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	6 cut(s)	205, 430, 586, 595, 914, 962
BspACI	CCGC	2 cut(s)	260, 480
BspANI	GGCC	1 cut(s)	882
BspCNI	CTCAG	1 cut(s)	595
BspHI	TCATGA	2 cut(s)	97, 811
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	425, 922
BspT104I	TTCGAA	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	3 cut(s)	257, 366, 708
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	6 cut(s)	205, 430, 586, 595, 914, 962
Bst2UI	CCWGG	3 cut(s)	193, 569, 824
Bst4CI	ACNGT	4 cut(s)	535, 541, 857, 952
BstAPI	GCANNNNNTGC	1 cut(s)	844
BstAUI	TGTACA	1 cut(s)	732
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	686, 840
BstDEI	CTNAG	3 cut(s)	603, 831, 910
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	6 cut(s)	208, 433, 589, 598, 917, 965
BstMBI	GATC	6 cut(s)	205, 430, 586, 595, 914, 962
BstMWI	GCNNNNNNNGC	1 cut(s)	844
BstNI	CCWGG	3 cut(s)	193, 569, 824
BstNSI	RCATGY	3 cut(s)	123, 295, 688
BstSCI	CCNGG	3 cut(s)	191, 567, 822
BstSFI	CTRYAG	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	575
BsuRI	GGCC	1 cut(s)	882
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	5 cut(s)	373, 715, 842, 862, 957
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	686, 840
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	2 cut(s)	97, 811
Csp6I	GTAC	3 cut(s)	467, 733, 891
CviAII	CATG	8 cut(s)	98, 120, 181, 292, 575, 685, 812, 966
CviQI	GTAC	3 cut(s)	467, 733, 891
DdeI	CTNAG	3 cut(s)	603, 831, 910
DpnI	GATC	6 cut(s)	207, 432, 588, 597, 916, 964
DpnII	GATC	6 cut(s)	205, 430, 586, 595, 914, 962
DraI	TTTAAA	1 cut(s)	718
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	3 cut(s)	191, 567, 822
FaeI	CATG	8 cut(s)	101, 123, 184, 295, 578, 688, 815, 969
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	8 cut(s)	97, 119, 180, 291, 574, 684, 811, 965
FauNDI	CATATG	1 cut(s)	877
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	116
FokI	GGATG	1 cut(s)	290
FspBI	CTAG	2 cut(s)	77, 663
HaeIII	GGCC	1 cut(s)	882
HapII	CCGG	1 cut(s)	896
Hin1II	CATG	8 cut(s)	101, 123, 184, 295, 578, 688, 815, 969
HinfI	GANTC	5 cut(s)	230, 299, 404, 457, 646
HpaII	CCGG	1 cut(s)	896
HphI	GGTGA	3 cut(s)	28, 200, 952
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	2 cut(s)	334, 489
Hpy188III	TCNNGA	6 cut(s)	98, 461, 590, 623, 791, 812
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	3 cut(s)	5, 13, 977
HpyCH4III	ACNGT	4 cut(s)	535, 541, 857, 952
HpyCH4V	TGCA	5 cut(s)	86, 112, 347, 371, 684
HpyF10VI	GCNNNNNNNGC	1 cut(s)	844
HpyF3I	CTNAG	3 cut(s)	603, 831, 910
Hsp92II	CATG	8 cut(s)	101, 123, 184, 295, 578, 688, 815, 969
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	6 cut(s)	205, 430, 586, 595, 914, 962
LmnI	GCTCC	4 cut(s)	310, 442, 522, 835
LweI	GCATC	3 cut(s)	16, 178, 364
MaeI	CTAG	2 cut(s)	77, 663
MaeIII	GTNAC	2 cut(s)	535, 940
MalI	GATC	6 cut(s)	207, 432, 588, 597, 916, 964
MboI	GATC	6 cut(s)	205, 430, 586, 595, 914, 962
MboII	GAAGA	5 cut(s)	232, 395, 605, 709, 800
MluCI	AATT	6 cut(s)	64, 169, 328, 559, 763, 988
MlyI	GAGTC	2 cut(s)	308, 413
MmeI	TCCRAC	2 cut(s)	674, 960
MnlI	CCTC	9 cut(s)	300, 541, 549, 598, 767, 770, 820, 917, 937
MseI	TTAA	6 cut(s)	611, 717, 752, 920, 959, 991
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	1 cut(s)	896
MspR9I	CCNGG	3 cut(s)	193, 569, 824
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	3 cut(s)	193, 569, 824
MwoI	GCNNNNNNNGC	1 cut(s)	844
NdeI	CATATG	1 cut(s)	877
NdeII	GATC	6 cut(s)	205, 430, 586, 595, 914, 962
NlaIII	CATG	8 cut(s)	101, 123, 184, 295, 578, 688, 815, 969
NmuCI	GTSAC	2 cut(s)	535, 940
NspI	RCATGY	3 cut(s)	123, 295, 688
NspV	TTCGAA	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	688
PagI	TCATGA	2 cut(s)	97, 811
PaqCI	CACCTGC	1 cut(s)	219
PciI	ACATGT	2 cut(s)	119, 291
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	230, 457, 646
PleI	GAGTC	2 cut(s)	307, 412
PpsI	GAGTC	2 cut(s)	307, 412
PscI	ACATGT	2 cut(s)	119, 291
Psp6I	CCWGG	3 cut(s)	191, 567, 822
PspGI	CCWGG	3 cut(s)	191, 567, 822
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	3 cut(s)	468, 734, 892
RsaNI	GTAC	3 cut(s)	467, 733, 891
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	6 cut(s)	611, 717, 752, 920, 959, 991
Sau3AI	GATC	6 cut(s)	205, 430, 586, 595, 914, 962
ScaI	AGTACT	1 cut(s)	892
SchI	GAGTC	2 cut(s)	308, 413
ScrFI	CCNGG	3 cut(s)	193, 569, 824
SetI	ASST	8 cut(s)	213, 319, 519, 573, 664, 864, 909, 929
SfaNI	GCATC	3 cut(s)	16, 178, 364
SfcI	CTRYAG	1 cut(s)	435
SfuI	TTCGAA	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	139, 215
SmoI	CTYRAG	2 cut(s)	139, 215
SphI	GCATGC	1 cut(s)	688
Sse9I	AATT	6 cut(s)	64, 169, 328, 559, 763, 988
SsiI	CCGC	2 cut(s)	260, 480
SspMI	CTAG	2 cut(s)	77, 663
StyD4I	CCNGG	3 cut(s)	191, 567, 822
TaaI	ACNGT	4 cut(s)	535, 541, 857, 952
TaqI	TCGA	5 cut(s)	68, 156, 302, 407, 767
TasI	AATT	6 cut(s)	64, 169, 328, 559, 763, 988
TatI	WGTACW	3 cut(s)	466, 732, 890
TfiI	GAWTC	3 cut(s)	230, 457, 646
Tru1I	TTAA	6 cut(s)	611, 717, 752, 920, 959, 991
Tru9I	TTAA	6 cut(s)	611, 717, 752, 920, 959, 991
TscAI	CASTG	5 cut(s)	373, 715, 849, 862, 957
TseFI	GTSAC	2 cut(s)	535, 940
Tsp45I	GTSAC	2 cut(s)	535, 940
TspDTI	ATGAA	6 cut(s)	29, 86, 425, 507, 563, 800
TspGWI	ACGGA	2 cut(s)	438, 919
TspRI	CASTG	5 cut(s)	373, 715, 849, 862, 957
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	3 cut(s)	123, 295, 688
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	2 cut(s)	77, 663
ZrmI	AGTACT	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.