Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006117

Physical Location & Seq

Genomic Coordinates Reverse (-)

49363060 .. 49364665

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGCCTCTCTGAAAATGGCGATTCGACTCGCTCGAAGCCCAGCATTGTCTTCTTCCATCTTCAACAAGTCAACCTCTACTCCTCCGCTTAAACCCTCACTCCACGATCCCAGGAGTTTCAACAACCACATAAACCCTAACCAGTGGAGCCCACCAAACCAGGGGTATGCAAACTCTAACCACTGGAATTCACAGACCCTGAGCCAGAGCTATCCTCAAATCAAAATCGAAGGTACCCACAAGCTGGAAACCGTAACCAGTCGAACAACAACAATCAATCAGGAGGAGAACCAGAACACAGTTGTTGTACCACATTCAATTGACGATTTGAGGCTGTTGTGCCGAGAGGGGAAGGTGAAGGAAGCTATTGAGTTGATGGGCAAAGAAGGGGTGAAGGCTGATGCTGATTGTTTTCATTCTTTGTTTGAGTTGTGTGGGAATTCGAAGTTGAAAGTTCATGATTTCTTTTTGCAGTCTACATGTAGGGGTAATAGTGACTTGAGCCATAAAGTAATCGAAATGTATGGAAAATGTGGAAGCATGACTGATGCCAGGAGAGTGTTTGATCACCTGCTTGAGAAGAACATTGATTCTTGGCATTTGATGATAAACTGGTATGCGGAGAACGGGTTAGGGGATGATGGGTTGCACATGTTTGAGTCGATGAGGGAGCAAGGTTTGAAACCCAATTCGGAAACATTCCTTGTAGTCTTTTCGGCTTGTGCCAGTGCAGATGTTGTTGAAGAATCATTTATACATTTTGAGTCGATGAAAACTGATTACGGATTTGATCCTGTAGTGGAGCATTATTTGAGGATTCTTGATGTACTTGGAAAATGCGGTCATCTGAATGAAGCAGTTGATTATATTGAGAAGCTCCCATTTGAGCCGACTGTGACAGTTTGGGAGGCATTGAGGAATTATGCCCAGGTTCATGGAGATATTGATCTTGAAGATCACGCTGAGGAGTTAATGATTCCAACTCCACCACCTAGAAAGCGTAGTGCTATTTGCATGCTTGATGGGAAGAACAGAACCAGTGAGTTTAAAAATCCCACATTGTACAAGGATTGTGAAAAGTTAAAGGCTCTCAATTCAATGAGAGGAGGGGGTTATGTTCCAGACACAAGATATGTTCTTCATGACATTGACCAGGAGGCTAAGGAGCAAGCACTGCTCTATCACAGTGAGCTTTTGGCAATCACATCTCTTAGGATCATTAACAACCTCCGTGTCTGTGGTGACTGCCACAGTGCCATTAAGATCATGTCCAAGATTGTTGGAAGGCAATTAATTGTTAGGGACAACAAACGTTTTCATCATTTTGAGGATGGAAAATGCTCTTGTGGTGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

453

Amino Acids

51.46

Weight (kDa)

6.09

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	195 - 242	1e-08	PPR repeat family
DYW_deaminase	PF14432	371 - 453	1.7e-31	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15690
fragaria_vesca	FvH4_2g06150
malus_domestica	MD05G1080000.v1.1
prunus_persica	Prupe.8G123800_v2.0.a1
pyrus_communis	pycom05g07310 pycom10g07740
rosa_chinensis	RchiOBHm_Chr6g0257041 RchiOBHm_Chr7g0228581
rosa_laevigata	RLG00000001553 RLG00000014672
rosa_multiflora	Rmu_sc0008871.1_g000003 Rmu_sc0011334.1_g000001 Rmu_sc0019183.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231050 Rroxscaffold_7G00208450
rosa_rugosa	Rorug05G0575600 Rorug07G0250600
rosa_samantha	Rh6AG093700 Rh6BG084500 Rh6CG081200 Rh6DG076600 Rh7AG402800 Rh7BG383700 Rh7CG422100 Rh7DG398500
rosa_wichuraiana	Rw6G008060 Rw7G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	579
Acc36I	ACCTGC	1 cut(s)	579
Acc65I	GGTACC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	233
AccB7I	CCANNNNNTGG	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	476
AciI	CCGC	3 cut(s)	86, 620, 840
AclI	AACGTT	1 cut(s)	1312
AclWI	GGATC	3 cut(s)	101, 785, 1223
AcsI	RAATTY	2 cut(s)	187, 439
AfaI	GTAC	4 cut(s)	235, 309, 828, 1064
AfiI	CCNNNNNNNGG	2 cut(s)	161, 244
AflIII	ACRYGT	2 cut(s)	479, 651
AgsI	TTSAA	8 cut(s)	64, 121, 318, 451, 682, 743, 953, 1098
AjnI	CCWGG	5 cut(s)	110, 159, 551, 927, 1152
AluBI	AGCT	5 cut(s)	210, 244, 365, 877, 1192
AluI	AGCT	5 cut(s)	210, 244, 365, 877, 1192
AlwI	GGATC	3 cut(s)	101, 785, 1223
AlwNI	CAGNNNCTG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	187, 439
AseI	ATTAAT	1 cut(s)	1292
Asp718I	GGTACC	1 cut(s)	233
AsuHPI	GGTGA	5 cut(s)	367, 403, 560, 1253, 1361
AsuII	TTCGAA	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	963
BccI	CCATC	5 cut(s)	65, 370, 635, 1016, 1325
BciT130I	CCWGG	5 cut(s)	112, 161, 553, 929, 1154
BclI	TGATCA	1 cut(s)	565
BfaI	CTAG	1 cut(s)	993
BfmI	CTRYAG	1 cut(s)	795
BfuAI	ACCTGC	1 cut(s)	579
Bme1390I	CCNGG	5 cut(s)	112, 161, 553, 929, 1154
BmiI	GGNNCC	2 cut(s)	149, 235
BmrFI	CCNGG	5 cut(s)	112, 161, 553, 929, 1154
BmsI	GCATC	2 cut(s)	391, 538
BpiI	GAAGAC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
Bpu10I	CCTNAGC	3 cut(s)	200, 963, 1161
Bpu14I	TTCGAA	1 cut(s)	443
BpuEI	CTTGAG	2 cut(s)	520, 596
BsaBI	GATNNNNATC	1 cut(s)	945
BsaJI	CCNNGG	3 cut(s)	110, 160, 927
BsaXI	ACNNNNNCTCC	6 cut(s)	64, 84, 94, 114, 614, 644
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 244
Bse1I	ACTGG	6 cut(s)	142, 188, 258, 617, 726, 1038
Bse8I	GATNNNNATC	1 cut(s)	945
BseBI	CCWGG	5 cut(s)	112, 161, 553, 929, 1154
BseDI	CCNNGG	3 cut(s)	110, 160, 927
BseGI	GGATG	2 cut(s)	643, 1336
BseJI	GATNNNNATC	1 cut(s)	945
BseLI	CCNNNNNNNGG	2 cut(s)	161, 244
BseMII	CTCAG	2 cut(s)	191, 954
BseNI	ACTGG	6 cut(s)	142, 188, 258, 617, 726, 1038
BseRI	GAGGAG	4 cut(s)	72, 299, 980, 1119
BseYI	CCCAGC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	1316
BslI	CCNNNNNNNGG	2 cut(s)	161, 244
BsmFI	GGGAC	1 cut(s)	1316
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp1407I	TGTACA	1 cut(s)	1062
Bsp143I	GATC	7 cut(s)	106, 565, 790, 946, 955, 1215, 1263
BspACI	CCGC	3 cut(s)	86, 620, 840
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	192, 955
BspHI	TCATGA	2 cut(s)	457, 1141
BspLI	GGNNCC	2 cut(s)	149, 235
BspMI	ACCTGC	1 cut(s)	579
BspPI	GGATC	3 cut(s)	101, 785, 1223
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	1062
BsrI	ACTGG	6 cut(s)	142, 188, 258, 617, 726, 1038
BssECI	CCNNGG	3 cut(s)	110, 160, 927
BssMI	GATC	7 cut(s)	106, 565, 790, 946, 955, 1215, 1263
Bst2UI	CCWGG	5 cut(s)	112, 161, 553, 929, 1154
Bst4CI	ACNGT	6 cut(s)	253, 301, 895, 901, 1187, 1253
BstAPI	GCANNNNNTGC	1 cut(s)	1174
BstAUI	TGTACA	1 cut(s)	1062
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	1016, 1170
BstDEI	CTNAG	4 cut(s)	200, 963, 1161, 1211
BstF5I	GGATG	2 cut(s)	643, 1336
BstKTI	GATC	7 cut(s)	109, 568, 793, 949, 958, 1218, 1266
BstMBI	GATC	7 cut(s)	106, 565, 790, 946, 955, 1215, 1263
BstMWI	GCNNNNNNNGC	1 cut(s)	1174
BstNI	CCWGG	5 cut(s)	112, 161, 553, 929, 1154
BstNSI	RCATGY	3 cut(s)	483, 655, 1018
BstSCI	CCNGG	5 cut(s)	110, 159, 551, 927, 1152
BstSFI	CTRYAG	1 cut(s)	795
BstV2I	GAAGAC	1 cut(s)	42
BstXI	CCANNNNNNTGG	1 cut(s)	935
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	643, 1336
BtsI	GCAGTG	1 cut(s)	1172
BtsIMutI	CAGTG	7 cut(s)	149, 181, 733, 1045, 1172, 1192, 1258
BveI	ACCTGC	1 cut(s)	579
Cac8I	GCNNGC	2 cut(s)	1016, 1170
CaiI	CAGNNNCTG	1 cut(s)	199
CciI	TCATGA	2 cut(s)	457, 1141
Csp6I	GTAC	4 cut(s)	234, 308, 827, 1063
CviAII	CATG	8 cut(s)	458, 480, 541, 652, 935, 1015, 1142, 1267
CviQI	GTAC	4 cut(s)	234, 308, 827, 1063
DdeI	CTNAG	4 cut(s)	200, 963, 1161, 1211
DpnI	GATC	7 cut(s)	108, 567, 792, 948, 957, 1217, 1265
DpnII	GATC	7 cut(s)	106, 565, 790, 946, 955, 1215, 1263
DraI	TTTAAA	1 cut(s)	1048
Eco24I	GRGCYC	1 cut(s)	152
EcoRI	GAATTC	2 cut(s)	187, 439
EcoRII	CCWGG	5 cut(s)	110, 159, 551, 927, 1152
EcoT38I	GRGCYC	1 cut(s)	152
FaeI	CATG	8 cut(s)	461, 483, 544, 655, 938, 1018, 1145, 1270
FaqI	GGGAC	1 cut(s)	1316
FatI	CATG	8 cut(s)	457, 479, 540, 651, 934, 1014, 1141, 1266
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	476
FokI	GGATG	2 cut(s)	650, 1343
FriOI	GRGCYC	1 cut(s)	152
FspBI	CTAG	1 cut(s)	993
GsaI	CCCAGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	461, 483, 544, 655, 938, 1018, 1145, 1270
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	8 cut(s)	22, 27, 590, 659, 746, 764, 817, 976
HphI	GGTGA	5 cut(s)	367, 403, 560, 1253, 1361
Hpy166II	GTNNAC	2 cut(s)	72, 477
Hpy188I	TCNGA	3 cut(s)	12, 694, 849
Hpy188III	TCNNGA	6 cut(s)	281, 458, 821, 950, 1121, 1142
Hpy8I	GTNNAC	2 cut(s)	72, 477
HpyAV	CCTTC	6 cut(s)	224, 346, 352, 380, 388, 1278
HpyCH4III	ACNGT	6 cut(s)	253, 301, 895, 901, 1187, 1253
HpyCH4IV	ACGT	1 cut(s)	1312
HpyCH4V	TGCA	5 cut(s)	170, 472, 649, 731, 1014
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1174
HpyF3I	CTNAG	4 cut(s)	200, 963, 1161, 1211
HpySE526I	ACGT	1 cut(s)	1312
Hsp92II	CATG	8 cut(s)	461, 483, 544, 655, 938, 1018, 1145, 1270
KpnI	GGTACC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	7 cut(s)	106, 565, 790, 946, 955, 1215, 1263
LmnI	GCTCC	5 cut(s)	147, 670, 802, 882, 1165
LweI	GCATC	2 cut(s)	391, 538
MaeI	CTAG	1 cut(s)	993
MaeII	ACGT	1 cut(s)	1312
MaeIII	GTNAC	4 cut(s)	253, 494, 895, 1241
MalI	GATC	7 cut(s)	108, 567, 792, 948, 957, 1217, 1265
MboI	GATC	7 cut(s)	106, 565, 790, 946, 955, 1215, 1263
MboII	GAAGA	8 cut(s)	42, 45, 52, 592, 755, 965, 1039, 1130
MfeI	CAATTG	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	8 cut(s)	187, 318, 439, 688, 919, 1093, 1289, 1293
MlyI	GAGTC	3 cut(s)	21, 668, 773
MmeI	TCCRAC	2 cut(s)	1004, 1261
MseI	TTAA	7 cut(s)	90, 971, 1047, 1082, 1221, 1260, 1292
MslI	CAYNNNNRTG	1 cut(s)	849
MspR9I	CCNGG	5 cut(s)	112, 161, 553, 929, 1154
MunI	CAATTG	1 cut(s)	318
MvaI	CCWGG	5 cut(s)	112, 161, 553, 929, 1154
MwoI	GCNNNNNNNGC	1 cut(s)	1174
NdeII	GATC	7 cut(s)	106, 565, 790, 946, 955, 1215, 1263
NlaIII	CATG	8 cut(s)	461, 483, 544, 655, 938, 1018, 1145, 1270
NlaIV	GGNNCC	2 cut(s)	149, 235
NmeAIII	GCCGAG	1 cut(s)	368
NmuCI	GTSAC	3 cut(s)	494, 895, 1241
NspI	RCATGY	3 cut(s)	483, 655, 1018
NspV	TTCGAA	1 cut(s)	443
PaeI	GCATGC	1 cut(s)	1018
PagI	TCATGA	2 cut(s)	457, 1141
PaqCI	CACCTGC	1 cut(s)	579
PciI	ACATGT	2 cut(s)	479, 651
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PfeI	GAWTC	5 cut(s)	22, 590, 746, 817, 976
PflMI	CCANNNNNTGG	1 cut(s)	244
PleI	GAGTC	3 cut(s)	21, 667, 772
PpsI	GAGTC	3 cut(s)	21, 667, 772
PscI	ACATGT	2 cut(s)	479, 651
PshBI	ATTAAT	1 cut(s)	1292
Psp1406I	AACGTT	1 cut(s)	1312
Psp6I	CCWGG	5 cut(s)	110, 159, 551, 927, 1152
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	5 cut(s)	110, 159, 551, 927, 1152
PspN4I	GGNNCC	2 cut(s)	149, 235
PstNI	CAGNNNCTG	1 cut(s)	199
RsaI	GTAC	4 cut(s)	235, 309, 828, 1064
RsaNI	GTAC	4 cut(s)	234, 308, 827, 1063
RseI	CAYNNNNRTG	1 cut(s)	849
SaqAI	TTAA	7 cut(s)	90, 971, 1047, 1082, 1221, 1260, 1292
Sau3AI	GATC	7 cut(s)	106, 565, 790, 946, 955, 1215, 1263
SchI	GAGTC	3 cut(s)	21, 668, 773
ScrFI	CCNGG	5 cut(s)	112, 161, 553, 929, 1154
SduI	GDGCHC	1 cut(s)	152
SfaNI	GCATC	2 cut(s)	391, 538
SfcI	CTRYAG	1 cut(s)	795
SfuI	TTCGAA	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	2 cut(s)	499, 575
SmoI	CTYRAG	2 cut(s)	499, 575
SphI	GCATGC	1 cut(s)	1018
Sse9I	AATT	8 cut(s)	187, 318, 439, 688, 919, 1093, 1289, 1293
SsiI	CCGC	3 cut(s)	86, 620, 840
SspMI	CTAG	1 cut(s)	993
StyD4I	CCNGG	5 cut(s)	110, 159, 551, 927, 1152
TaaI	ACNGT	6 cut(s)	253, 301, 895, 901, 1187, 1253
TaiI	ACGT	1 cut(s)	1315
TaqI	TCGA	8 cut(s)	25, 34, 228, 262, 443, 516, 662, 767
TasI	AATT	8 cut(s)	187, 318, 439, 688, 919, 1093, 1289, 1293
TatI	WGTACW	2 cut(s)	826, 1062
TfiI	GAWTC	5 cut(s)	22, 590, 746, 817, 976
Tru1I	TTAA	7 cut(s)	90, 971, 1047, 1082, 1221, 1260, 1292
Tru9I	TTAA	7 cut(s)	90, 971, 1047, 1082, 1221, 1260, 1292
TscAI	CASTG	7 cut(s)	149, 188, 733, 1045, 1179, 1192, 1258
TseFI	GTSAC	3 cut(s)	494, 895, 1241
Tsp45I	GTSAC	3 cut(s)	494, 895, 1241
TspDTI	ATGAA	7 cut(s)	404, 446, 785, 867, 923, 1130, 1307
TspGWI	ACGGA	2 cut(s)	798, 1220
TspRI	CASTG	7 cut(s)	149, 188, 733, 1045, 1179, 1192, 1258
Van91I	CCANNNNNTGG	1 cut(s)	244
VspI	ATTAAT	1 cut(s)	1292
XapI	RAATTY	2 cut(s)	187, 439
XceI	RCATGY	3 cut(s)	483, 655, 1018
XmiI	GTMKAC	1 cut(s)	476
XspI	CTAG	1 cut(s)	993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.