Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011334.1

Orthogroup ID

OG0006117

Physical Location & Seq

Genomic Coordinates Forward (+)

1238 .. 4366

Gene Structure 3129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011334.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

atgggcaaagaaggggtgaaggctgatggtgattgttttcattctttgtttgagttgtgtgggaattcgaagttgaaagttcatgatttctttttgcagtctacatgtaggggtaatagtgacttgagccataaagtaatcgaaatgtatggaaaatgtggaagtatgactgatgccaggagagtgtttgatcacctgcttgagaagaacattgattcttggcatttgatgataaactggtatgcggagaacgggttaggggatgatgggttgcacatgtttgagtcgatgagggagcaaggtttgaaacccaattcggaaacattccttgtagtcttttcggcttgtgccagtgcagatgttgttgaagaatcatttatacattttgagtcgatgaaaactgattacggatttgatcctgtagtggagcattatttggggattcttgatgtacttggaaaatgcggtcatctgaatgaaacagttgagtatattgagaagctcccatttgagccgactgtgacagtttgggaggcattgaggaattatgcccaggttcatggagatattgatcttgaagatcacgctgaggagttaatggttgctcttgacccgtcaagggctgttgctggtaagattccaactccaccacctagaaagcgtagtgctatttgcatgcttgatgggaagaacagaactagtgagtttaaaaatcccacattgtacaaggattgtgaaaagttaaaggctctcaattcgaatagaggagggggttatgttccagacacaagatatgttcttcatgacattgaccaggaggctaaggagcaagcactgctctatcacagtgagcttttggcaatcgcatttggcctgattagtactctggcaagacacctcttaggatcattaacaacctccgtgtctgtggtgactgccacaagatcatgtgctaatcatttggaacagaaatttgatgcctcttgggacccccatcctgctgatggtgcaatgtcccccttacctggtcgcacaagggtggagaccgaaggggatgcaaaagcagtgattcaagcccttgtgtacatggagatacgttctcctgggggtaatggagtagcacttagttggcaagaagagcactatcttgctcataattgtttcttgtttgcggtagaacctccgtggccgtcttcgtgtctggaggctgatgtacttgatgtaattgttgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

411

Amino Acids

45.71

Weight (kDa)

5.11

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15690
fragaria_vesca	FvH4_2g06150
malus_domestica	MD05G1080000.v1.1
prunus_persica	Prupe.8G123800_v2.0.a1
pyrus_communis	pycom05g07310 pycom10g07740
rosa_chinensis	RchiOBHm_Chr6g0257041 RchiOBHm_Chr7g0228581
rosa_laevigata	RLG00000001553 RLG00000014672
rosa_multiflora	Rmu_sc0008871.1_g000003 Rmu_sc0011334.1_g000001 Rmu_sc0019183.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231050 Rroxscaffold_7G00208450
rosa_rugosa	Rorug05G0575600 Rorug07G0250600
rosa_samantha	Rh6AG093700 Rh6BG084500 Rh6CG081200 Rh6DG076600 Rh7AG402800 Rh7BG383700 Rh7CG422100 Rh7DG398500
rosa_wichuraiana	Rw6G008060 Rw7G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	204
Acc36I	ACCTGC	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	101
AciI	CCGC	3 cut(s)	245, 465, 1172
AclWI	GGATC	2 cut(s)	410, 913
AcoI	YGGCCR	1 cut(s)	1187
AcsI	RAATTY	2 cut(s)	64, 971
AfaI	GTAC	5 cut(s)	453, 725, 883, 1085, 1215
AfiI	CCNNNNNNNGG	3 cut(s)	619, 1004, 1025
AflIII	ACRYGT	2 cut(s)	104, 276
AgsI	TTSAA	5 cut(s)	76, 307, 368, 578, 1073
AhlI	ACTAGT	1 cut(s)	698
AjnI	CCWGG	5 cut(s)	176, 552, 813, 1024, 1102
AleI	CACNNNNGTG	1 cut(s)	1037
AluBI	AGCT	2 cut(s)	502, 853
AluI	AGCT	2 cut(s)	502, 853
Alw21I	GWGCWC	1 cut(s)	1143
Alw26I	GTCTC	1 cut(s)	1037
AlwI	GGATC	2 cut(s)	410, 913
AoxI	GGCC	2 cut(s)	871, 1187
ApoI	RAATTY	2 cut(s)	64, 971
AspS9I	GGNCC	1 cut(s)	988
AsuHPI	GGTGA	4 cut(s)	28, 41, 185, 943
AsuII	TTCGAA	2 cut(s)	68, 758
AvaII	GGWCC	1 cut(s)	988
BbsI	GAAGAC	1 cut(s)	1185
Bbv12I	GWGCWC	1 cut(s)	1143
BbvCI	CCTCAGC	1 cut(s)	588
BccI	CCATC	5 cut(s)	20, 260, 677, 998, 1002
BceAI	ACGGC	1 cut(s)	1174
BcgI	CGANNNNNNTGC	2 cut(s)	1037, 1071
BciT130I	CCWGG	5 cut(s)	178, 554, 815, 1026, 1104
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	1037
BcuI	ACTAGT	1 cut(s)	698
BfaI	CTAG	2 cut(s)	654, 699
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	204
BmcAI	AGTACT	1 cut(s)	883
Bme1390I	CCNGG	5 cut(s)	178, 554, 815, 1026, 1104
Bme18I	GGWCC	1 cut(s)	988
BmgT120I	GGNCC	1 cut(s)	988
BmiI	GGNNCC	2 cut(s)	989, 990
BmrFI	CCNGG	5 cut(s)	178, 554, 815, 1026, 1104
BmsI	GCATC	3 cut(s)	163, 967, 1045
BpiI	GAAGAC	1 cut(s)	1185
BpmI	CTGGAG	1 cut(s)	1223
Bpu10I	CCTNAGC	2 cut(s)	588, 822
Bpu14I	TTCGAA	2 cut(s)	68, 758
BpuEI	CTTGAG	2 cut(s)	145, 221
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	1037
BsaJI	CCNNGG	3 cut(s)	552, 1103, 1184
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	3 cut(s)	619, 1004, 1025
Bse1I	ACTGG	2 cut(s)	242, 351
Bse3DI	GCAATG	1 cut(s)	1017
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	5 cut(s)	178, 554, 815, 1026, 1104
BseDI	CCNNGG	3 cut(s)	552, 1103, 1184
BseGI	GGATG	3 cut(s)	268, 994, 1060
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	3 cut(s)	619, 1004, 1025
BseMI	GCAATG	1 cut(s)	1017
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	2 cut(s)	242, 351
BseRI	GAGGAG	2 cut(s)	605, 780
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	2 cut(s)	873, 1189
BsiHKAI	GWGCWC	1 cut(s)	1143
BslFI	GGGAC	2 cut(s)	1000, 1001
BslI	CCNNNNNNNGG	3 cut(s)	619, 1004, 1025
BsmAI	GTCTC	1 cut(s)	1037
BsmFI	GGGAC	2 cut(s)	1000, 1001
BsnI	GGCC	2 cut(s)	873, 1189
Bso31I	GGTCTC	1 cut(s)	1037
Bsp119I	TTCGAA	2 cut(s)	68, 758
Bsp1286I	GDGCHC	1 cut(s)	1143
Bsp1407I	TGTACA	2 cut(s)	723, 1083
Bsp143I	GATC	6 cut(s)	190, 415, 571, 580, 905, 944
BspACI	CCGC	3 cut(s)	245, 465, 1172
BspANI	GGCC	2 cut(s)	873, 1189
BspCNI	CTCAG	1 cut(s)	580
BspHI	TCATGA	2 cut(s)	82, 802
BspLI	GGNNCC	2 cut(s)	989, 990
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	410, 913
BspQI	GCTCTTC	1 cut(s)	1131
BspT104I	TTCGAA	2 cut(s)	68, 758
BspTNI	GGTCTC	1 cut(s)	1037
BsrDI	GCAATG	1 cut(s)	1017
BsrGI	TGTACA	2 cut(s)	723, 1083
BsrI	ACTGG	2 cut(s)	242, 351
BssECI	CCNNGG	3 cut(s)	552, 1103, 1184
BssMI	GATC	6 cut(s)	190, 415, 571, 580, 905, 944
Bst2UI	CCWGG	5 cut(s)	178, 554, 815, 1026, 1104
Bst4CI	ACNGT	4 cut(s)	484, 520, 526, 848
Bst6I	CTCTTC	1 cut(s)	1131
BstAPI	GCANNNNNTGC	1 cut(s)	835
BstAUI	TGTACA	2 cut(s)	723, 1083
BstBI	TTCGAA	2 cut(s)	68, 758
BstC8I	GCNNGC	2 cut(s)	677, 831
BstDEI	CTNAG	4 cut(s)	588, 822, 901, 1124
BstDSI	CCRYGG	1 cut(s)	1184
BstF5I	GGATG	3 cut(s)	268, 994, 1060
BstKTI	GATC	6 cut(s)	193, 418, 574, 583, 908, 947
BstMAI	GTCTC	1 cut(s)	1037
BstMBI	GATC	6 cut(s)	190, 415, 571, 580, 905, 944
BstMWI	GCNNNNNNNGC	3 cut(s)	835, 1007, 1138
BstNI	CCWGG	5 cut(s)	178, 554, 815, 1026, 1104
BstNSI	RCATGY	3 cut(s)	108, 280, 679
BstSCI	CCNGG	5 cut(s)	176, 552, 813, 1024, 1102
BstSFI	CTRYAG	1 cut(s)	420
BstV2I	GAAGAC	1 cut(s)	1185
BstXI	CCANNNNNNTGG	1 cut(s)	560
BsuRI	GGCC	2 cut(s)	873, 1189
BtgI	CCRYGG	1 cut(s)	1184
BtsCI	GGATG	3 cut(s)	268, 994, 1060
BtsI	GCAGTG	2 cut(s)	833, 1071
BtsIMutI	CAGTG	4 cut(s)	358, 833, 853, 1071
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	677, 831
CciI	TCATGA	2 cut(s)	82, 802
Cfr13I	GGNCC	1 cut(s)	988
CsiI	ACCWGGT	1 cut(s)	1024
Csp6I	GTAC	5 cut(s)	452, 724, 882, 1084, 1214
CviAII	CATG	8 cut(s)	83, 105, 277, 560, 676, 803, 948, 1087
CviQI	GTAC	5 cut(s)	452, 724, 882, 1084, 1214
DdeI	CTNAG	4 cut(s)	588, 822, 901, 1124
DpnI	GATC	6 cut(s)	192, 417, 573, 582, 907, 946
DpnII	GATC	6 cut(s)	190, 415, 571, 580, 905, 944
DraI	TTTAAA	1 cut(s)	709
EaeI	YGGCCR	1 cut(s)	1187
Eam1104I	CTCTTC	1 cut(s)	1131
EarI	CTCTTC	1 cut(s)	1131
Eco31I	GGTCTC	1 cut(s)	1037
Eco47I	GGWCC	1 cut(s)	988
EcoO109I	RGGNCCY	1 cut(s)	988
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	5 cut(s)	176, 552, 813, 1024, 1102
FaeI	CATG	8 cut(s)	86, 108, 280, 563, 679, 806, 951, 1090
FaqI	GGGAC	2 cut(s)	1000, 1001
FatI	CATG	8 cut(s)	82, 104, 276, 559, 675, 802, 947, 1086
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	101
FokI	GGATG	3 cut(s)	275, 981, 1067
FspBI	CTAG	2 cut(s)	654, 699
GsuI	CTGGAG	1 cut(s)	1223
HaeIII	GGCC	2 cut(s)	873, 1189
Hin1II	CATG	8 cut(s)	86, 108, 280, 563, 679, 806, 951, 1090
HinfI	GANTC	7 cut(s)	215, 284, 371, 389, 442, 637, 1069
HphI	GGTGA	4 cut(s)	28, 41, 185, 943
Hpy166II	GTNNAC	2 cut(s)	102, 1084
Hpy188I	TCNGA	2 cut(s)	319, 474
Hpy188III	TCNNGA	7 cut(s)	83, 446, 575, 608, 782, 803, 1202
Hpy8I	GTNNAC	2 cut(s)	102, 1084
HpyAV	CCTTC	3 cut(s)	5, 13, 1043
HpyCH4III	ACNGT	4 cut(s)	484, 520, 526, 848
HpyCH4IV	ACGT	1 cut(s)	1096
HpyCH4V	TGCA	6 cut(s)	97, 274, 356, 675, 1010, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	835, 1007, 1138
HpyF3I	CTNAG	4 cut(s)	588, 822, 901, 1124
HpySE526I	ACGT	1 cut(s)	1096
Hsp92II	CATG	8 cut(s)	86, 108, 280, 563, 679, 806, 951, 1090
KflI	GGGWCCC	1 cut(s)	988
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	190, 415, 571, 580, 905, 944
LguI	GCTCTTC	1 cut(s)	1131
LmnI	GCTCC	4 cut(s)	295, 427, 507, 826
LweI	GCATC	3 cut(s)	163, 967, 1045
MabI	ACCWGGT	1 cut(s)	1024
MaeI	CTAG	2 cut(s)	654, 699
MaeII	ACGT	1 cut(s)	1096
MaeIII	GTNAC	3 cut(s)	119, 520, 931
MalI	GATC	6 cut(s)	192, 417, 573, 582, 907, 946
MboI	GATC	6 cut(s)	190, 415, 571, 580, 905, 944
MboII	GAAGA	7 cut(s)	217, 380, 590, 700, 791, 1148, 1185
MhlI	GDGCHC	1 cut(s)	1143
MluCI	AATT	7 cut(s)	64, 313, 544, 754, 971, 1156, 1224
MlyI	GAGTC	2 cut(s)	293, 398
MmeI	TCCRAC	1 cut(s)	665
MseI	TTAA	5 cut(s)	596, 708, 743, 911, 1234
MslI	CAYNNNNRTG	2 cut(s)	474, 1037
MspR9I	CCNGG	5 cut(s)	178, 554, 815, 1026, 1104
MvaI	CCWGG	5 cut(s)	178, 554, 815, 1026, 1104
MwoI	GCNNNNNNNGC	3 cut(s)	835, 1007, 1138
NdeII	GATC	6 cut(s)	190, 415, 571, 580, 905, 944
NlaIII	CATG	8 cut(s)	86, 108, 280, 563, 679, 806, 951, 1090
NlaIV	GGNNCC	2 cut(s)	989, 990
NmuCI	GTSAC	3 cut(s)	119, 520, 931
NspI	RCATGY	3 cut(s)	108, 280, 679
NspV	TTCGAA	2 cut(s)	68, 758
OliI	CACNNNNGTG	1 cut(s)	1037
PaeI	GCATGC	1 cut(s)	679
PagI	TCATGA	2 cut(s)	82, 802
PaqCI	CACCTGC	1 cut(s)	204
PciI	ACATGT	2 cut(s)	104, 276
PciSI	GCTCTTC	1 cut(s)	1131
PfeI	GAWTC	5 cut(s)	215, 371, 442, 637, 1069
PleI	GAGTC	2 cut(s)	292, 397
PpsI	GAGTC	2 cut(s)	292, 397
PpuMI	RGGWCCY	1 cut(s)	988
PscI	ACATGT	2 cut(s)	104, 276
Psp5II	RGGWCCY	1 cut(s)	988
Psp6I	CCWGG	5 cut(s)	176, 552, 813, 1024, 1102
PspGI	CCWGG	5 cut(s)	176, 552, 813, 1024, 1102
PspN4I	GGNNCC	2 cut(s)	989, 990
PspPI	GGNCC	1 cut(s)	988
PspPPI	RGGWCCY	1 cut(s)	988
RsaI	GTAC	5 cut(s)	453, 725, 883, 1085, 1215
RsaNI	GTAC	5 cut(s)	452, 724, 882, 1084, 1214
RseI	CAYNNNNRTG	2 cut(s)	474, 1037
SapI	GCTCTTC	1 cut(s)	1131
SaqAI	TTAA	5 cut(s)	596, 708, 743, 911, 1234
Sau3AI	GATC	6 cut(s)	190, 415, 571, 580, 905, 944
Sau96I	GGNCC	1 cut(s)	988
ScaI	AGTACT	1 cut(s)	883
SchI	GAGTC	2 cut(s)	293, 398
ScrFI	CCNGG	5 cut(s)	178, 554, 815, 1026, 1104
SduI	GDGCHC	1 cut(s)	1143
SexAI	ACCWGGT	1 cut(s)	1024
SfaNI	GCATC	3 cut(s)	163, 967, 1045
SfcI	CTRYAG	1 cut(s)	420
SfuI	TTCGAA	2 cut(s)	68, 758
SinI	GGWCC	1 cut(s)	988
SmiMI	CAYNNNNRTG	2 cut(s)	474, 1037
SmlI	CTYRAG	2 cut(s)	124, 200
SmoI	CTYRAG	2 cut(s)	124, 200
SpeI	ACTAGT	1 cut(s)	698
SphI	GCATGC	1 cut(s)	679
Sse9I	AATT	7 cut(s)	64, 313, 544, 754, 971, 1156, 1224
SsiI	CCGC	3 cut(s)	245, 465, 1172
SspMI	CTAG	2 cut(s)	654, 699
StyD4I	CCNGG	5 cut(s)	176, 552, 813, 1024, 1102
TaaI	ACNGT	4 cut(s)	484, 520, 526, 848
TaiI	ACGT	1 cut(s)	1099
TaqI	TCGA	5 cut(s)	68, 141, 287, 392, 758
TaqII	GACCGA	1 cut(s)	1061
TasI	AATT	7 cut(s)	64, 313, 544, 754, 971, 1156, 1224
TatI	WGTACW	5 cut(s)	451, 723, 881, 1083, 1213
TfiI	GAWTC	5 cut(s)	215, 371, 442, 637, 1069
Tru1I	TTAA	5 cut(s)	596, 708, 743, 911, 1234
Tru9I	TTAA	5 cut(s)	596, 708, 743, 911, 1234
TscAI	CASTG	4 cut(s)	358, 840, 853, 1071
TseFI	GTSAC	3 cut(s)	119, 520, 931
Tsp45I	GTSAC	3 cut(s)	119, 520, 931
TspDTI	ATGAA	6 cut(s)	29, 71, 410, 492, 548, 791
TspGWI	ACGGA	3 cut(s)	423, 910, 1173
TspRI	CASTG	4 cut(s)	358, 840, 853, 1071
VpaK11BI	GGWCC	1 cut(s)	988
XapI	RAATTY	2 cut(s)	64, 971
XceI	RCATGY	3 cut(s)	108, 280, 679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1001
XmiI	GTMKAC	1 cut(s)	101
XspI	CTAG	2 cut(s)	654, 699
ZrmI	AGTACT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.