Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006117

Physical Location & Seq

Genomic Coordinates Forward (+)

12313665 .. 12315832

Gene Structure 2168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGATGAAGAGGGGGTTAAGGCTGATGCTGATTGCTTTCATTCTTTGTTTAAATTGTGTGGGGATTCGAAGTCGTTTGAGAATGCAAAGAAAGTTCATGACTTCTTTTTGCAGTCGACATATAGGAGTAGTCGTGACTTGAGCCATAAAGTGATTGAAATGTATGGAAAGTGTGGAAGCATGACTGATGCACGGAGAGTGTTTGATCACCTGGTGGAGAAGAACATTGATTCTTGGCATTTGATGATCAACTGGTATGCAGATAATGGGTTAGGAGATGATGCGTTGCAGATGTTTGAGCTGATGAGGGAGCAAGGGTTGAAGCCCAATTCTGACACTTTCCTTGCAGTTTTTGCAGCTTGTGCTAGTGCAGATGCTGTGGAAGAAGCATTTTTACATTTCGACTCAATGAAACAGGAGTACGGATTTGATCCAGAAGTGGAGCATTATTTGGGGATTCTAGATGTGCTTGGAAAATGTGGTCATCTGCATGAAGCAGTTGATTATATTGAGAAACTCCCATTTGAGCCTACAGTGGAAGTTTGGGAGGCATTGTGGAATTATGCTCGGATCCATGGAGATATTGATCTTGAAGATCATGCTGAGGAGTTAATGGTTGCTCTTGATCCGTCAAAGGCTATTACTAATAAGATCCCAACTCCACCACCAAAAAAGCGTACTGCTATTAGCATGCTTGATGGGAAAAACAGAATCACTGAGTTCAAAAATCCCACATTGTACAAGGATGATGAAAAGTTAAAGGCTCTCAATTCGATGAGAGGAGGAGGTTATGTTCCAGACACAAGATATGTTCTTCATGACATTGACCAGGAGGCAAAGGAGCAAGCCTTGCTCTATCACAGTGAGCGTTTGGCAATCGCATATGGTCTAATTAGTACTCCGGCAAGGACACCGCTTAGGATCATCAAAAACCTTCGTGTTTGTGGTGACTGTCACAATGCCATTAAGATCATGTCTAAGATTGTTGGAAGGGAATTAATTGTTAGGGACAATAAACGTTTTCATCATTTCAAGGATGGAAAATGCTCTTGTGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

355

Amino Acids

40.56

Weight (kDa)

5.66

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 122	3.8e-09	PPR repeat family
DYW_deaminase	PF14432	263 - 355	5.2e-45	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15690
fragaria_vesca	FvH4_2g06150
malus_domestica	MD05G1080000.v1.1
prunus_persica	Prupe.8G123800_v2.0.a1
pyrus_communis	pycom05g07310 pycom10g07740
rosa_chinensis	RchiOBHm_Chr6g0257041 RchiOBHm_Chr7g0228581
rosa_laevigata	RLG00000001553 RLG00000014672
rosa_multiflora	Rmu_sc0008871.1_g000003 Rmu_sc0011334.1_g000001 Rmu_sc0019183.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231050 Rroxscaffold_7G00208450
rosa_rugosa	Rorug05G0575600 Rorug07G0250600
rosa_samantha	Rh6AG093700 Rh6BG084500 Rh6CG081200 Rh6DG076600 Rh7AG402800 Rh7BG383700 Rh7CG422100 Rh7DG398500
rosa_wichuraiana	Rw6G008060 Rw7G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	116
AciI	CCGC	1 cut(s)	914
AclI	AACGTT	1 cut(s)	1018
AclWI	GGATC	6 cut(s)	425, 565, 578, 620, 646, 929
AdeI	CACNNNGTG	1 cut(s)	214
AfaI	GTAC	4 cut(s)	422, 679, 740, 898
AgsI	TTSAA	5 cut(s)	158, 322, 593, 724, 1033
AjnI	CCWGG	2 cut(s)	210, 828
AloI	GAACNNNNNNTCC	2 cut(s)	777, 809
AluBI	AGCT	2 cut(s)	301, 359
AluI	AGCT	2 cut(s)	301, 359
AlwI	GGATC	6 cut(s)	425, 565, 578, 620, 646, 929
AlwNI	CAGNNNCTG	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	356
AseI	ATTAAT	1 cut(s)	998
AsuHPI	GGTGA	2 cut(s)	200, 959
AsuII	TTCGAA	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	570
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbvCI	CCTCAGC	1 cut(s)	603
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	2 cut(s)	692, 1031
BciT130I	CCWGG	2 cut(s)	212, 830
BclI	TGATCA	2 cut(s)	205, 246
BfaI	CTAG	2 cut(s)	366, 461
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
BmcAI	AGTACT	1 cut(s)	898
Bme1390I	CCNGG	2 cut(s)	212, 830
BmiI	GGNNCC	1 cut(s)	572
BmrFI	CCNGG	2 cut(s)	212, 830
BmsI	GCATC	4 cut(s)	16, 178, 271, 364
Bpu10I	CCTNAGC	2 cut(s)	603, 917
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	574
BsaXI	ACNNNNNCTCC	8 cut(s)	118, 148, 302, 332, 539, 569, 777, 807
Bse1I	ACTGG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	2 cut(s)	212, 830
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	3 cut(s)	10, 751, 1042
BseJI	GATNNNNATC	1 cut(s)	585
BseMII	CTCAG	2 cut(s)	594, 708
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	3 cut(s)	620, 795, 798
BseXI	GCAGC	1 cut(s)	368
BsgI	GTGCAG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	902
BslFI	GGGAC	1 cut(s)	1022
BsmFI	GGGAC	1 cut(s)	1022
BsmI	GAATGC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	738
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	1 cut(s)	914
BspCNI	CTCAG	2 cut(s)	595, 709
BspHI	TCATGA	2 cut(s)	97, 817
BspLI	GGNNCC	1 cut(s)	572
BspPI	GGATC	6 cut(s)	425, 565, 578, 620, 646, 929
BspT104I	TTCGAA	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	738
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	2 cut(s)	212, 830
Bst4CI	ACNGT	3 cut(s)	535, 863, 953
Bst6I	CTCTTC	1 cut(s)	3
BstAPI	GCANNNNNTGC	3 cut(s)	353, 362, 850
BstAUI	TGTACA	1 cut(s)	738
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	692, 846
BstDEI	CTNAG	4 cut(s)	603, 717, 917, 978
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	3 cut(s)	10, 751, 1042
BstMWI	GCNNNNNNNGC	3 cut(s)	353, 362, 850
BstNI	CCWGG	2 cut(s)	212, 830
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	2 cut(s)	210, 828
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	368
BstX2I	RGATCY	2 cut(s)	570, 651
BstYI	RGATCY	2 cut(s)	570, 651
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	3 cut(s)	10, 751, 1042
BtsIMutI	CAGTG	3 cut(s)	540, 714, 868
Cac8I	GCNNGC	2 cut(s)	692, 846
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	2 cut(s)	97, 817
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	4 cut(s)	421, 678, 739, 897
CviAII	CATG	8 cut(s)	98, 181, 491, 575, 599, 691, 818, 973
CviJI	RGCY	9 cut(s)	23, 144, 301, 325, 359, 529, 638, 764, 848
CviKI_1	RGCY	9 cut(s)	23, 144, 301, 325, 359, 529, 638, 764, 848
CviQI	GTAC	4 cut(s)	421, 678, 739, 897
DdeI	CTNAG	4 cut(s)	603, 717, 917, 978
DraI	TTTAAA	1 cut(s)	52
DraIII	CACNNNGTG	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	210, 828
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	8 cut(s)	101, 184, 494, 578, 602, 694, 821, 976
FaqI	GGGAC	1 cut(s)	1022
FatI	CATG	8 cut(s)	97, 180, 490, 574, 598, 690, 817, 972
FauNDI	CATATG	1 cut(s)	883
FbaI	TGATCA	2 cut(s)	205, 246
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	3 cut(s)	17, 758, 1049
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	2 cut(s)	366, 461
GluI	GCNGC	1 cut(s)	357
HapII	CCGG	1 cut(s)	902
Hin1II	CATG	8 cut(s)	101, 184, 494, 578, 602, 694, 821, 976
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	5 cut(s)	65, 230, 404, 457, 711
HpaII	CCGG	1 cut(s)	902
HphI	GGTGA	2 cut(s)	200, 959
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	2 cut(s)	334, 570
Hpy188III	TCNNGA	8 cut(s)	98, 134, 434, 461, 590, 623, 797, 818
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	944, 984
HpyCH4III	ACNGT	3 cut(s)	535, 863, 953
HpyCH4IV	ACGT	1 cut(s)	1018
HpyCH4V	TGCA	9 cut(s)	86, 112, 191, 260, 289, 347, 356, 371, 490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	353, 362, 850
HpyF3I	CTNAG	4 cut(s)	603, 717, 917, 978
HpySE526I	ACGT	1 cut(s)	1018
Hsp92II	CATG	8 cut(s)	101, 184, 494, 578, 602, 694, 821, 976
Ksp22I	TGATCA	2 cut(s)	205, 246
LmnI	GCTCC	3 cut(s)	310, 442, 841
LpnPI	CCDG	9 cut(s)	197, 224, 238, 401, 447, 810, 815, 842, 915
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	4 cut(s)	16, 178, 271, 364
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	2 cut(s)	366, 461
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	3 cut(s)	134, 947, 953
MboII	GAAGA	5 cut(s)	20, 232, 395, 605, 806
MflI	RGATCY	2 cut(s)	570, 651
MluCI	AATT	7 cut(s)	53, 328, 559, 769, 891, 995, 999
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	967
MnlI	CCTC	8 cut(s)	4, 300, 541, 598, 773, 776, 779, 826
MseI	TTAA	6 cut(s)	18, 51, 611, 758, 966, 998
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	1 cut(s)	902
MspR9I	CCNGG	2 cut(s)	212, 830
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	2 cut(s)	212, 830
MwoI	GCNNNNNNNGC	3 cut(s)	353, 362, 850
NcoI	CCATGG	1 cut(s)	574
NdeI	CATATG	1 cut(s)	883
NlaIII	CATG	8 cut(s)	101, 184, 494, 578, 602, 694, 821, 976
NlaIV	GGNNCC	1 cut(s)	572
NmuCI	GTSAC	3 cut(s)	134, 947, 953
NspI	RCATGY	1 cut(s)	694
NspV	TTCGAA	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	694
PagI	TCATGA	2 cut(s)	97, 817
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	4 cut(s)	65, 230, 457, 711
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PshBI	ATTAAT	1 cut(s)	998
Psp1406I	AACGTT	1 cut(s)	1018
Psp6I	CCWGG	2 cut(s)	210, 828
PspGI	CCWGG	2 cut(s)	210, 828
PspN4I	GGNNCC	1 cut(s)	572
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	570, 651
RsaI	GTAC	4 cut(s)	422, 679, 740, 898
RsaNI	GTAC	4 cut(s)	421, 678, 739, 897
RseI	CAYNNNNRTG	1 cut(s)	489
SalI	GTCGAC	1 cut(s)	115
SaqAI	TTAA	6 cut(s)	18, 51, 611, 758, 966, 998
SatI	GCNGC	1 cut(s)	357
ScaI	AGTACT	1 cut(s)	898
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	212, 830
SetI	ASST	6 cut(s)	213, 303, 361, 790, 936, 1021
SexAI	ACCWGGT	1 cut(s)	210
SfaNI	GCATC	4 cut(s)	16, 178, 271, 364
SfcI	CTRYAG	1 cut(s)	531
SfuI	TTCGAA	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
SphI	GCATGC	1 cut(s)	694
Sse9I	AATT	7 cut(s)	53, 328, 559, 769, 891, 995, 999
SsiI	CCGC	1 cut(s)	914
SspMI	CTAG	2 cut(s)	366, 461
StyD4I	CCNGG	2 cut(s)	210, 828
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	3 cut(s)	535, 863, 953
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	4 cut(s)	68, 116, 402, 773
TasI	AATT	7 cut(s)	53, 328, 559, 769, 891, 995, 999
TatI	WGTACW	2 cut(s)	738, 896
TfiI	GAWTC	4 cut(s)	65, 230, 457, 711
Tru1I	TTAA	6 cut(s)	18, 51, 611, 758, 966, 998
Tru9I	TTAA	6 cut(s)	18, 51, 611, 758, 966, 998
TscAI	CASTG	3 cut(s)	540, 721, 868
TseFI	GTSAC	3 cut(s)	134, 947, 953
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	3 cut(s)	134, 947, 953
TspDTI	ATGAA	8 cut(s)	21, 29, 86, 425, 507, 765, 806, 1013
TspGWI	ACGGA	3 cut(s)	208, 438, 618
TspRI	CASTG	3 cut(s)	540, 721, 868
VspI	ATTAAT	1 cut(s)	998
XbaI	TCTAGA	1 cut(s)	460
XceI	RCATGY	1 cut(s)	694
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	2 cut(s)	366, 461
ZrmI	AGTACT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.