Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006117

Physical Location & Seq

Genomic Coordinates Forward (+)

16792512 .. 16794374

Gene Structure 1863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1080000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1863 bp

ATGGCGTCTCTCATGGCGATTCGACGCGCACGAAGCCCTTTGCTGTCTCCTTTCTTAAAGTTACGGCCTCTTCACCCTTCTCATTTCTCCTCCTTTCACGGCAACAACACCACCGCCATCCCAACCCTAACATCAGCGAAAACCCTAAGCACCTCCGCCGTCCCAAATGAGCACCCGAGGCCTCCTCAGCAACAACCCCCGCCGTCCGATCCTAGGTATTTCAATGACCAGGCGAACCTTAACCAGTGGAGCCCAGAAGGTCAGGGATACGGCAACCCGAACCAGTGGAATTCGCAGACCCAGGGGCCTGGGAATCAGTTCAATTATCAGGGTCAGAACCAGAGCTATTCCAATCGGGGATATCCTAATCAGGGTTCGGACTATCCCAATCGCGGATATCCTAACCAGATTAACCAGAATCAGAGCTACCCACAACGCGGAAACTCGAATCAGTGGAGTCCGGCTCAGGGGCAGGGGAAGGGCACTCCTCAGTATCAAAACCCTAACCAGGTGAATCCTCCCCCTCCGAGCCCCAATTTTCAGCAACCCAGAAGCCCAAATCAGTGGAACAATCCCAATCAAGGATACCCACAACCTGGAAACCGTAATCAGTGGAGCCCACCAGCTCAAAACCCTAACCAGTGGAGCCCCCAATCTCAAAACCCTAATCGGTGGAGCCCACAACCTCAAAACCCTGCTCAGGCTGTGAATCAAACCCCGGAAGTTGTGCCCCGTTCGATCGATGATTTGAGGAGGTTGTGCCAAGAGGGAAAGGCTAAAGAAGCCCTTGAATTGATGGATAAGGAAGGGGTCAAGGCTGATGCTGATTGCTTTCGTTCTTTGTTTGAGTTGTGCGGGAGATTGAAGTCGCTCGAGGACGCAAAAAAGGCTCATGATTTCTTTTTGCAGTCTACCTGCAGGGGTAATCGTGAGTTAATCCATAAAATCATTGAAATGTATAGAAAGTGTGCGAGCATGACTGATGCACGGAGAGTGTTCGATCATATGCTTGAGAAGAATATTGATTCTTGGCATTTAATGATTAATGGGTATGCGGATAATGGGTTAGGAGATGATGGATTGCAGATGTTTGAGATGATGAGGGAGAAAGGGTTGCAACCCAATTCCGAAACTTTCCTTGCAGTATTCTCAGCTTGCGCTAGTGCAGATGCGGTGGAAGAAGCATTTATACATTTTGAGTCGATGAAAACTGAGTATGGAATTTCTCCAGGTGTGGAGCATTATATGGGAGTTTTAGATGTGCTTGGAAAATGTGGTCATCTTTACGAAGCAATTGATTATATTGAGAAGCTCCCATTTGAGCCTACAGCGCCAGTTTGGGAGGCATTGAAAAGTTATGCTCGGATTCATGGAGATATTGATCTTGAAGATCATGCTGAGGAGTTAATGGTTGCTCTTGACCCGTCAAAGGCTGTTGTGAATAAGATCCCAACTCCACCACCGAAAAAGCATACTGCTATTAGCATGCTTGATGGGAAGAGCAGAATTAGTGAGTTTAAAAATCCGACACTCTACAAGGATGATGAGAAGTTAAAGGCTCTTGCTGCGATGAAAGGAGGAGGTTATGTGCCAGACACAAGATATGTCCTTCATGACATTGATCAGGAGGCCAAGGAGCAGGCCTTGCTTTATCACAGTGAGCGATTGGCAATCGCGTATGGTCTCATCAGTACTCCGCCAAGGCAAACTCTTAGGATCATCAAGAACCTCCGCGTGTGCGGTGACTGCCATAATGCCATTAAGATCATGTCGAAGATTGTTGGAAGGGAATTGATCGTCAGGGACAACAAACGATTCCATCATTTCAAGGACGGAAAATGCTCGTGTGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

621

Amino Acids

70.01

Weight (kDa)

7.92

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	340 - 387	1.7e-08	PPR repeat family
PPR	PF01535	343 - 372	4.4e-06	PPR repeat
DYW_deaminase	PF14432	528 - 620	3.6e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15690
fragaria_vesca	FvH4_2g06150
malus_domestica	MD05G1080000.v1.1
prunus_persica	Prupe.8G123800_v2.0.a1
pyrus_communis	pycom05g07310 pycom10g07740
rosa_chinensis	RchiOBHm_Chr6g0257041 RchiOBHm_Chr7g0228581
rosa_laevigata	RLG00000001553 RLG00000014672
rosa_multiflora	Rmu_sc0008871.1_g000003 Rmu_sc0011334.1_g000001 Rmu_sc0019183.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231050 Rroxscaffold_7G00208450
rosa_rugosa	Rorug05G0575600 Rorug07G0250600
rosa_samantha	Rh6AG093700 Rh6BG084500 Rh6CG081200 Rh6DG076600 Rh7AG402800 Rh7BG383700 Rh7CG422100 Rh7DG398500
rosa_wichuraiana	Rw6G008060 Rw7G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	923
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	911
AccII	CGCG	5 cut(s)	27, 393, 438, 1676, 1734
AclWI	GGATC	3 cut(s)	203, 1441, 1724
AcsI	RAATTY	2 cut(s)	289, 1221
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	1693
AgsI	TTSAA	8 cut(s)	223, 322, 791, 865, 953, 1351, 1388, 1828
AjnI	CCWGG	6 cut(s)	228, 300, 307, 507, 595, 1228
AluBI	AGCT	5 cut(s)	345, 426, 626, 1154, 1312
AluI	AGCT	5 cut(s)	345, 426, 626, 1154, 1312
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	3 cut(s)	12, 51, 1688
AlwI	GGATC	3 cut(s)	203, 1441, 1724
Ama87I	CYCGRG	2 cut(s)	175, 872
AoxI	GGCC	5 cut(s)	65, 179, 305, 1629, 1641
ApeKI	GCWGC	1 cut(s)	1565
ApoI	RAATTY	2 cut(s)	289, 1221
AseI	ATTAAT	1 cut(s)	1044
Asp700I	GAANNNNTTC	1 cut(s)	317
AspA2I	CCTAGG	1 cut(s)	212
AspLEI	GCGC	3 cut(s)	29, 1160, 1333
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	719
AsuHPI	GGTGA	3 cut(s)	65, 523, 1754
AvaI	CYCGRG	2 cut(s)	175, 872
AvrII	CCTAGG	1 cut(s)	212
BaeGI	GKGCMC	2 cut(s)	485, 732
BanII	GRGCYC	5 cut(s)	254, 533, 620, 650, 680
BarI	GAAGNNNNNNTAC	2 cut(s)	1173, 1205
BauI	CACGAG	1 cut(s)	1843
Bbv12I	GWGCWC	1 cut(s)	174
BbvCI	CCTCAGC	2 cut(s)	186, 1398
BbvI	GCAGC	1 cut(s)	1552
BccI	CCATC	5 cut(s)	125, 790, 1070, 1487, 1827
BceAI	ACGGC	5 cut(s)	80, 115, 143, 187, 286
BciT130I	CCWGG	6 cut(s)	230, 302, 309, 509, 597, 1230
BciVI	GTATCC	2 cut(s)	260, 578
BclI	TGATCA	1 cut(s)	1621
BcnI	CCSGG	1 cut(s)	719
BcoDI	GTCTC	3 cut(s)	12, 51, 1688
BfaI	CTAG	2 cut(s)	213, 1161
BfmI	CTRYAG	2 cut(s)	916, 1326
BfoI	RGCGCY	1 cut(s)	1334
BfuAI	ACCTGC	1 cut(s)	923
BfuI	GTATCC	2 cut(s)	260, 578
BisI	GCNGC	1 cut(s)	1566
BlnI	CCTAGG	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	1567
BmcAI	AGTACT	1 cut(s)	1693
Bme1390I	CCNGG	7 cut(s)	230, 302, 309, 509, 597, 719, 1230
BmeT110I	CYCGRG	2 cut(s)	175, 872
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	5 cut(s)	251, 306, 617, 647, 677
BmrFI	CCNGG	7 cut(s)	230, 302, 309, 509, 597, 719, 1230
BmsI	GCATC	3 cut(s)	811, 973, 1159
BplI	GAGNNNNNCTC	4 cut(s)	169, 201, 448, 480
BpmI	CTGGAG	1 cut(s)	1212
Bpu10I	CCTNAGC	5 cut(s)	146, 186, 465, 699, 1398
BpuEI	CTTGAG	1 cut(s)	1031
BpuMI	CCSGG	1 cut(s)	719
Bsa29I	ATCGAT	1 cut(s)	741
BsaBI	GATNNNNATC	1 cut(s)	1380
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	1688
BsaJI	CCNNGG	8 cut(s)	176, 212, 300, 301, 308, 717, 1632, 1700
BsaXI	ACNNNNNCTCC	4 cut(s)	1097, 1127, 1572, 1602
Bse1I	ACTGG	4 cut(s)	244, 283, 640, 1334
Bse8I	GATNNNNATC	1 cut(s)	1380
BseBI	CCWGG	6 cut(s)	230, 302, 309, 509, 597, 1230
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	8 cut(s)	176, 212, 300, 301, 308, 717, 1632, 1700
BseGI	GGATG	2 cut(s)	117, 1546
BseJI	GATNNNNATC	1 cut(s)	1380
BseMII	CTCAG	7 cut(s)	200, 479, 503, 713, 1164, 1203, 1389
BseNI	ACTGG	4 cut(s)	244, 283, 640, 1334
BseRI	GAGGAG	6 cut(s)	79, 174, 477, 766, 1415, 1593
BseSI	GKGCMC	2 cut(s)	485, 732
BseXI	GCAGC	1 cut(s)	1552
BsgI	GTGCAG	1 cut(s)	1185
Bsh1236I	CGCG	5 cut(s)	27, 393, 438, 1676, 1734
Bsh1285I	CGRYCG	1 cut(s)	741
BshFI	GGCC	5 cut(s)	67, 181, 307, 1631, 1643
BshVI	ATCGAT	1 cut(s)	741
BsiEI	CGRYCG	1 cut(s)	741
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	2 cut(s)	175, 872
BsiSI	CCGG	2 cut(s)	461, 719
BslFI	GGGAC	2 cut(s)	146, 1817
BsmAI	GTCTC	3 cut(s)	12, 51, 1688
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	146, 1817
BsnI	GGCC	5 cut(s)	67, 181, 307, 1631, 1643
Bso31I	GGTCTC	1 cut(s)	1688
BsoBI	CYCGRG	2 cut(s)	175, 872
Bsp1286I	GDGCHC	8 cut(s)	174, 254, 485, 533, 620, 650, 680, 732
BspANI	GGCC	5 cut(s)	67, 181, 307, 1631, 1643
BspCNI	CTCAG	7 cut(s)	199, 478, 502, 712, 1163, 1204, 1390
BspDI	ATCGAT	1 cut(s)	741
BspFNI	CGCG	5 cut(s)	27, 393, 438, 1676, 1734
BspHI	TCATGA	2 cut(s)	892, 1612
BspLI	GGNNCC	5 cut(s)	251, 306, 617, 647, 677
BspMAI	CTGCAG	1 cut(s)	920
BspMI	ACCTGC	1 cut(s)	923
BspPI	GGATC	3 cut(s)	203, 1441, 1724
BspQI	GCTCTTC	1 cut(s)	1493
BspTNI	GGTCTC	1 cut(s)	1688
BsrI	ACTGG	4 cut(s)	244, 283, 640, 1334
BssECI	CCNNGG	8 cut(s)	176, 212, 300, 301, 308, 717, 1632, 1700
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	1843
BssT1I	CCWWGG	3 cut(s)	212, 1632, 1700
Bst2BI	CACGAG	1 cut(s)	1843
Bst2UI	CCWGG	6 cut(s)	230, 302, 309, 509, 597, 1230
Bst4CI	ACNGT	2 cut(s)	605, 1658
Bst6I	CTCTTC	2 cut(s)	75, 1493
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	1645
BstC8I	GCNNGC	4 cut(s)	973, 1156, 1487, 1641
BstDEI	CTNAG	9 cut(s)	146, 186, 465, 489, 699, 1150, 1212, 1398, 1712
BstF5I	GGATG	2 cut(s)	117, 1546
BstFNI	CGCG	5 cut(s)	27, 393, 438, 1676, 1734
BstH2I	RGCGCY	1 cut(s)	1334
BstHHI	GCGC	3 cut(s)	29, 1160, 1333
BstMAI	GTCTC	3 cut(s)	12, 51, 1688
BstMCI	CGRYCG	1 cut(s)	741
BstMWI	GCNNNNNNNGC	9 cut(s)	33, 178, 187, 782, 887, 1330, 1565, 1645, 1746
BstNI	CCWGG	6 cut(s)	230, 302, 309, 509, 597, 1230
BstNSI	RCATGY	1 cut(s)	1489
BstSCI	CCNGG	7 cut(s)	228, 300, 307, 507, 595, 717, 1228
BstSFI	CTRYAG	2 cut(s)	916, 1326
BstSLI	GKGCMC	2 cut(s)	485, 732
BstUI	CGCG	5 cut(s)	27, 393, 438, 1676, 1734
BstV1I	GCAGC	1 cut(s)	1552
BstX2I	RGATCY	1 cut(s)	1446
BstXI	CCANNNNNNTGG	2 cut(s)	308, 564
BstYI	RGATCY	1 cut(s)	1446
Bsu15I	ATCGAT	1 cut(s)	741
BsuI	GTATCC	2 cut(s)	260, 578
BsuRI	GGCC	5 cut(s)	67, 181, 307, 1631, 1643
BsuTUI	ATCGAT	1 cut(s)	741
BtgZI	GCGATG	1 cut(s)	1583
BtsCI	GGATG	2 cut(s)	117, 1546
BtsIMutI	CAGTG	7 cut(s)	251, 290, 458, 569, 617, 647, 1663
BveI	ACCTGC	1 cut(s)	923
Cac8I	GCNNGC	4 cut(s)	973, 1156, 1487, 1641
CciI	TCATGA	2 cut(s)	892, 1612
CfoI	GCGC	3 cut(s)	29, 1160, 1333
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	741
CseI	GACGC	2 cut(s)	33, 887
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	1692
CviAII	CATG	8 cut(s)	13, 893, 976, 1370, 1394, 1486, 1613, 1768
CviQI	GTAC	1 cut(s)	1692
DdeI	CTNAG	9 cut(s)	146, 186, 465, 489, 699, 1150, 1212, 1398, 1712
DraI	TTTAAA	1 cut(s)	1519
Eam1104I	CTCTTC	2 cut(s)	75, 1493
EarI	CTCTTC	2 cut(s)	75, 1493
EciI	GGCGGA	2 cut(s)	145, 1686
Eco130I	CCWWGG	3 cut(s)	212, 1632, 1700
Eco147I	AGGCCT	2 cut(s)	181, 1643
Eco24I	GRGCYC	5 cut(s)	254, 533, 620, 650, 680
Eco31I	GGTCTC	1 cut(s)	1688
Eco32I	GATATC	2 cut(s)	362, 398
Eco88I	CYCGRG	2 cut(s)	175, 872
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	6 cut(s)	228, 300, 307, 507, 595, 1228
EcoRV	GATATC	2 cut(s)	362, 398
EcoT14I	CCWWGG	3 cut(s)	212, 1632, 1700
EcoT38I	GRGCYC	5 cut(s)	254, 533, 620, 650, 680
ErhI	CCWWGG	3 cut(s)	212, 1632, 1700
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	8 cut(s)	16, 896, 979, 1373, 1397, 1489, 1616, 1771
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	2 cut(s)	146, 1817
FatI	CATG	8 cut(s)	12, 892, 975, 1369, 1393, 1485, 1612, 1767
FauI	CCCGC	2 cut(s)	207, 848
FauNDI	CATATG	1 cut(s)	1005
FbaI	TGATCA	1 cut(s)	1621
FblI	GTMKAC	1 cut(s)	911
Fnu4HI	GCNGC	1 cut(s)	1566
FokI	GGATG	2 cut(s)	104, 1553
FriOI	GRGCYC	5 cut(s)	254, 533, 620, 650, 680
Fsp4HI	GCNGC	1 cut(s)	1566
FspBI	CTAG	2 cut(s)	213, 1161
GlaI	GCGC	3 cut(s)	28, 1159, 1332
GluI	GCNGC	1 cut(s)	1566
GsuI	CTGGAG	1 cut(s)	1212
HaeII	RGCGCY	1 cut(s)	1334
HaeIII	GGCC	5 cut(s)	67, 181, 307, 1631, 1643
HapII	CCGG	2 cut(s)	461, 719
HgaI	GACGC	2 cut(s)	33, 887
HhaI	GCGC	3 cut(s)	29, 1160, 1333
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	16, 896, 979, 1373, 1397, 1489, 1616, 1771
Hin6I	GCGC	3 cut(s)	27, 1158, 1331
HinP1I	GCGC	3 cut(s)	27, 1158, 1331
HpaII	CCGG	2 cut(s)	461, 719
HphI	GGTGA	3 cut(s)	65, 523, 1754
Hpy166II	GTNNAC	1 cut(s)	912
Hpy188I	TCNGA	8 cut(s)	208, 336, 379, 423, 528, 1129, 1365, 1527
Hpy188III	TCNNGA	7 cut(s)	893, 929, 1385, 1418, 1613, 1625, 1723
Hpy8I	GTNNAC	1 cut(s)	912
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	6 cut(s)	87, 251, 472, 800, 1619, 1779
HpyCH4III	ACNGT	2 cut(s)	605, 1658
HpyCH4V	TGCA	7 cut(s)	907, 918, 986, 1084, 1117, 1142, 1166
HpyF10VI	GCNNNNNNNGC	9 cut(s)	33, 178, 187, 782, 887, 1330, 1565, 1645, 1746
HpyF3I	CTNAG	9 cut(s)	146, 186, 465, 489, 699, 1150, 1212, 1398, 1712
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	8 cut(s)	16, 896, 979, 1373, 1397, 1489, 1616, 1771
HspAI	GCGC	3 cut(s)	27, 1158, 1331
Ksp22I	TGATCA	1 cut(s)	1621
LguI	GCTCTTC	1 cut(s)	1493
LmnI	GCTCC	7 cut(s)	249, 615, 645, 675, 1237, 1317, 1636
Lsp1109I	GCAGC	1 cut(s)	1552
LweI	GCATC	3 cut(s)	811, 973, 1159
MabI	ACCWGGT	1 cut(s)	507
MaeI	CTAG	2 cut(s)	213, 1161
MaeIII	GTNAC	2 cut(s)	60, 1742
MboII	GAAGA	6 cut(s)	62, 1027, 1190, 1400, 1510, 1786
MfeI	CAATTG	1 cut(s)	1293
MflI	RGATCY	1 cut(s)	1446
MhlI	GDGCHC	8 cut(s)	174, 254, 485, 533, 620, 650, 680, 732
MluCI	AATT	9 cut(s)	289, 322, 535, 791, 1123, 1221, 1293, 1506, 1790
MlyI	GAGTC	2 cut(s)	466, 1208
MmeI	TCCRAC	2 cut(s)	1550, 1762
MroXI	GAANNNNTTC	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	953
MspI	CCGG	2 cut(s)	461, 719
MspR9I	CCNGG	7 cut(s)	230, 302, 309, 509, 597, 719, 1230
MunI	CAATTG	1 cut(s)	1293
MvaI	CCWGG	6 cut(s)	230, 302, 309, 509, 597, 1230
MvnI	CGCG	5 cut(s)	27, 393, 438, 1676, 1734
MwoI	GCNNNNNNNGC	9 cut(s)	33, 178, 187, 782, 887, 1330, 1565, 1645, 1746
NciI	CCSGG	1 cut(s)	719
NdeI	CATATG	1 cut(s)	1005
NlaIII	CATG	8 cut(s)	16, 896, 979, 1373, 1397, 1489, 1616, 1771
NlaIV	GGNNCC	5 cut(s)	251, 306, 617, 647, 677
NmuCI	GTSAC	1 cut(s)	1742
NspI	RCATGY	1 cut(s)	1489
PaeI	GCATGC	1 cut(s)	1489
PaeR7I	CTCGAG	1 cut(s)	872
PagI	TCATGA	2 cut(s)	892, 1612
PasI	CCCWGGG	1 cut(s)	301
PceI	AGGCCT	2 cut(s)	181, 1643
PciSI	GCTCTTC	1 cut(s)	1493
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	9 cut(s)	19, 313, 418, 448, 514, 709, 1025, 1366, 1815
PflMI	CCANNNNNTGG	1 cut(s)	596
PkrI	GCNGC	1 cut(s)	1567
Ple19I	CGATCG	1 cut(s)	741
PleI	GAGTC	2 cut(s)	465, 1207
PpsI	GAGTC	2 cut(s)	465, 1207
PshBI	ATTAAT	1 cut(s)	1044
Psp6I	CCWGG	6 cut(s)	228, 300, 307, 507, 595, 1228
PspGI	CCWGG	6 cut(s)	228, 300, 307, 507, 595, 1228
PspN4I	GGNNCC	5 cut(s)	251, 306, 617, 647, 677
PspPI	GGNCC	1 cut(s)	305
PspXI	VCTCGAGB	1 cut(s)	872
PstI	CTGCAG	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	1446
PvuI	CGATCG	1 cut(s)	741
RsaI	GTAC	1 cut(s)	1693
RsaNI	GTAC	1 cut(s)	1692
RseI	CAYNNNNRTG	1 cut(s)	953
SapI	GCTCTTC	1 cut(s)	1493
SatI	GCNGC	1 cut(s)	1566
Sau96I	GGNCC	1 cut(s)	305
SbfI	CCTGCAGG	1 cut(s)	920
ScaI	AGTACT	1 cut(s)	1693
SchI	GAGTC	2 cut(s)	466, 1208
ScrFI	CCNGG	7 cut(s)	230, 302, 309, 509, 597, 719, 1230
SdaI	CCTGCAGG	1 cut(s)	920
SduI	GDGCHC	8 cut(s)	174, 254, 485, 533, 620, 650, 680, 732
SexAI	ACCWGGT	1 cut(s)	507
SfaNI	GCATC	3 cut(s)	811, 973, 1159
SfcI	CTRYAG	2 cut(s)	916, 1326
Sfr274I	CTCGAG	1 cut(s)	872
SlaI	CTCGAG	1 cut(s)	872
SmiMI	CAYNNNNRTG	1 cut(s)	953
SmlI	CTYRAG	2 cut(s)	872, 1010
SmoI	CTYRAG	2 cut(s)	872, 1010
SphI	GCATGC	1 cut(s)	1489
Sse8387I	CCTGCAGG	1 cut(s)	920
Sse9I	AATT	9 cut(s)	289, 322, 535, 791, 1123, 1221, 1293, 1506, 1790
SseBI	AGGCCT	2 cut(s)	181, 1643
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	2 cut(s)	213, 1161
StuI	AGGCCT	2 cut(s)	181, 1643
StyD4I	CCNGG	7 cut(s)	228, 300, 307, 507, 595, 717, 1228
StyI	CCWWGG	3 cut(s)	212, 1632, 1700
TaaI	ACNGT	2 cut(s)	605, 1658
TaqI	TCGA	8 cut(s)	22, 446, 737, 741, 873, 999, 1202, 1772
TasI	AATT	9 cut(s)	289, 322, 535, 791, 1123, 1221, 1293, 1506, 1790
TatI	WGTACW	1 cut(s)	1691
TfiI	GAWTC	9 cut(s)	19, 313, 418, 448, 514, 709, 1025, 1366, 1815
TscAI	CASTG	7 cut(s)	251, 290, 458, 569, 617, 647, 1663
TseFI	GTSAC	1 cut(s)	1742
TseI	GCWGC	1 cut(s)	1565
Tsp45I	GTSAC	1 cut(s)	1742
TspDTI	ATGAA	4 cut(s)	1220, 1358, 1586, 1601
TspGWI	ACGGA	2 cut(s)	1003, 1848
TspRI	CASTG	7 cut(s)	251, 290, 458, 569, 617, 647, 1663
Van91I	CCANNNNNTGG	1 cut(s)	596
VspI	ATTAAT	1 cut(s)	1044
XapI	RAATTY	2 cut(s)	289, 1221
XceI	RCATGY	1 cut(s)	1489
XhoI	CTCGAG	1 cut(s)	872
XmaJI	CCTAGG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	911
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	2 cut(s)	213, 1161
ZrmI	AGTACT	1 cut(s)	1693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.