Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G15690 |
| fragaria_vesca | FvH4_2g06150 |
| malus_domestica | MD05G1080000.v1.1 |
| prunus_persica | Prupe.8G123800_v2.0.a1 |
| pyrus_communis | pycom05g07310 pycom10g07740 |
| rosa_chinensis | RchiOBHm_Chr6g0257041 RchiOBHm_Chr7g0228581 |
| rosa_laevigata | RLG00000001553 RLG00000014672 |
| rosa_multiflora | Rmu_sc0008871.1_g000003 Rmu_sc0011334.1_g000001 Rmu_sc0019183.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00231050 Rroxscaffold_7G00208450 |
| rosa_rugosa | Rorug05G0575600 Rorug07G0250600 |
| rosa_samantha | Rh6AG093700 Rh6BG084500 Rh6CG081200 Rh6DG076600 Rh7AG402800 Rh7BG383700 Rh7CG422100 Rh7DG398500 |
| rosa_wichuraiana | Rw6G008060 Rw7G033470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 175, 359 |
| Acc65I | GGTACC | 1 cut(s) | 21 |
| AccB1I | GGYRCC | 1 cut(s) | 21 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 32, 682 |
| AccI | GTMKAC | 1 cut(s) | 347 |
| AccII | CGCG | 1 cut(s) | 907 |
| AciI | CCGC | 5 cut(s) | 40, 291, 491, 896, 1133 |
| AclWI | GGATC | 4 cut(s) | 46, 59, 877, 1160 |
| AcsI | RAATTY | 1 cut(s) | 657 |
| AfaI | GTAC | 4 cut(s) | 23, 165, 406, 1129 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 18, 32, 682, 865 |
| AflIII | ACRYGT | 1 cut(s) | 905 |
| AgsI | TTSAA | 4 cut(s) | 174, 389, 787, 824 |
| AjnI | CCWGG | 1 cut(s) | 31 |
| AluBI | AGCT | 3 cut(s) | 92, 221, 748 |
| AluI | AGCT | 3 cut(s) | 92, 221, 748 |
| Alw26I | GTCTC | 2 cut(s) | 30, 1124 |
| AlwI | GGATC | 4 cut(s) | 46, 59, 877, 1160 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1183 |
| Ama87I | CYCGRG | 1 cut(s) | 308 |
| AoxI | GGCC | 2 cut(s) | 324, 1077 |
| ApeKI | GCWGC | 3 cut(s) | 911, 1001, 1183 |
| ApoI | RAATTY | 1 cut(s) | 657 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 231, 263 |
| AseI | ATTAAT | 1 cut(s) | 480 |
| Asp718I | GGTACC | 1 cut(s) | 21 |
| AspLEI | GCGC | 1 cut(s) | 596 |
| AspS9I | GGNCC | 2 cut(s) | 325, 673 |
| AsuC2I | CCSGG | 1 cut(s) | 155 |
| AsuHPI | GGTGA | 1 cut(s) | 544 |
| AvaI | CYCGRG | 1 cut(s) | 308 |
| AvaII | GGWCC | 1 cut(s) | 673 |
| BamHI | GGATCC | 1 cut(s) | 51 |
| BanI | GGYRCC | 1 cut(s) | 21 |
| BanII | GRGCYC | 1 cut(s) | 116 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 609, 641 |
| BbvI | GCAGC | 3 cut(s) | 898, 988, 1170 |
| BccI | CCATC | 4 cut(s) | 226, 506, 868, 923 |
| BciT130I | CCWGG | 1 cut(s) | 33 |
| BciVI | GTATCC | 1 cut(s) | 74 |
| BcnI | CCSGG | 1 cut(s) | 155 |
| BcoDI | GTCTC | 2 cut(s) | 30, 1124 |
| BfaI | CTAG | 1 cut(s) | 597 |
| BfmI | CTRYAG | 3 cut(s) | 352, 762, 1175 |
| BfuAI | ACCTGC | 2 cut(s) | 175, 359 |
| BfuI | GTATCC | 1 cut(s) | 74 |
| BisI | GCNGC | 3 cut(s) | 912, 1002, 1184 |
| BlsI | GCNGC | 3 cut(s) | 913, 1003, 1185 |
| BmcAI | AGTACT | 1 cut(s) | 1129 |
| Bme1390I | CCNGG | 2 cut(s) | 33, 155 |
| Bme18I | GGWCC | 1 cut(s) | 673 |
| BmeT110I | CYCGRG | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 2 cut(s) | 325, 673 |
| BmiI | GGNNCC | 3 cut(s) | 23, 53, 113 |
| BmrFI | CCNGG | 2 cut(s) | 33, 155 |
| BmsI | GCATC | 4 cut(s) | 247, 304, 409, 595 |
| BpmI | CTGGAG | 2 cut(s) | 54, 687 |
| Bpu10I | CCTNAGC | 1 cut(s) | 135 |
| BpuEI | CTTGAG | 1 cut(s) | 467 |
| BpuMI | CCSGG | 1 cut(s) | 155 |
| Bsa29I | ATCGAT | 2 cut(s) | 1056, 1155 |
| BsaI | GGTCTC | 2 cut(s) | 30, 1124 |
| BsaJI | CCNNGG | 4 cut(s) | 153, 309, 1068, 1136 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 533, 563, 1008, 1038 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 18, 32, 682, 865 |
| Bse118I | RCCGGY | 1 cut(s) | 58 |
| BseBI | CCWGG | 1 cut(s) | 33 |
| BseCI | ATCGAT | 2 cut(s) | 1056, 1155 |
| BseDI | CCNNGG | 4 cut(s) | 153, 309, 1068, 1136 |
| BseGI | GGATG | 2 cut(s) | 319, 700 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 18, 32, 682, 865 |
| BseMII | CTCAG | 2 cut(s) | 149, 639 |
| BseRI | GAGGAG | 3 cut(s) | 202, 851, 1029 |
| BseXI | GCAGC | 3 cut(s) | 898, 988, 1170 |
| BsgI | GTGCAG | 1 cut(s) | 621 |
| Bsh1236I | CGCG | 1 cut(s) | 907 |
| BshFI | GGCC | 2 cut(s) | 326, 1079 |
| BshNI | GGYRCC | 1 cut(s) | 21 |
| BshVI | ATCGAT | 2 cut(s) | 1056, 1155 |
| BsiHKCI | CYCGRG | 1 cut(s) | 308 |
| BsiSI | CCGG | 2 cut(s) | 59, 155 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 18, 32, 682, 865 |
| BsmAI | GTCTC | 2 cut(s) | 30, 1124 |
| BsnI | GGCC | 2 cut(s) | 326, 1079 |
| Bso31I | GGTCTC | 2 cut(s) | 30, 1124 |
| BsoBI | CYCGRG | 1 cut(s) | 308 |
| Bsp1286I | GDGCHC | 1 cut(s) | 116 |
| Bsp143I | GATC | 7 cut(s) | 51, 436, 826, 882, 1057, 1152, 1156 |
| BspACI | CCGC | 5 cut(s) | 40, 291, 491, 896, 1133 |
| BspANI | GGCC | 2 cut(s) | 326, 1079 |
| BspCNI | CTCAG | 2 cut(s) | 148, 640 |
| BspDI | ATCGAT | 2 cut(s) | 1056, 1155 |
| BspFNI | CGCG | 1 cut(s) | 907 |
| BspHI | TCATGA | 1 cut(s) | 1048 |
| BspLI | GGNNCC | 3 cut(s) | 23, 53, 113 |
| BspMAI | CTGCAG | 2 cut(s) | 356, 1179 |
| BspMI | ACCTGC | 2 cut(s) | 175, 359 |
| BspPI | GGATC | 4 cut(s) | 46, 59, 877, 1160 |
| BspT107I | GGYRCC | 1 cut(s) | 21 |
| BspTNI | GGTCTC | 2 cut(s) | 30, 1124 |
| BsrFI | RCCGGY | 1 cut(s) | 58 |
| BssAI | RCCGGY | 1 cut(s) | 58 |
| BssECI | CCNNGG | 4 cut(s) | 153, 309, 1068, 1136 |
| BssMI | GATC | 7 cut(s) | 51, 436, 826, 882, 1057, 1152, 1156 |
| BssT1I | CCWWGG | 2 cut(s) | 1068, 1136 |
| Bst2UI | CCWGG | 1 cut(s) | 33 |
| Bst4CI | ACNGT | 2 cut(s) | 766, 1094 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1081, 1183 |
| BstC8I | GCNNGC | 4 cut(s) | 132, 909, 923, 1077 |
| BstDEI | CTNAG | 3 cut(s) | 135, 648, 1148 |
| BstF5I | GGATG | 2 cut(s) | 319, 700 |
| BstFNI | CGCG | 1 cut(s) | 907 |
| BstHHI | GCGC | 1 cut(s) | 596 |
| BstKTI | GATC | 7 cut(s) | 54, 439, 829, 885, 1060, 1155, 1159 |
| BstMAI | GTCTC | 2 cut(s) | 30, 1124 |
| BstMBI | GATC | 7 cut(s) | 51, 436, 826, 882, 1057, 1152, 1156 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 218, 323, 766, 904, 1001, 1081, 1183 |
| BstNI | CCWGG | 1 cut(s) | 33 |
| BstNSI | RCATGY | 1 cut(s) | 925 |
| BstSCI | CCNGG | 2 cut(s) | 31, 153 |
| BstSFI | CTRYAG | 3 cut(s) | 352, 762, 1175 |
| BstUI | CGCG | 1 cut(s) | 907 |
| BstV1I | GCAGC | 3 cut(s) | 898, 988, 1170 |
| BstX2I | RGATCY | 2 cut(s) | 51, 882 |
| BstYI | RGATCY | 2 cut(s) | 51, 882 |
| Bsu15I | ATCGAT | 2 cut(s) | 1056, 1155 |
| BsuI | GTATCC | 1 cut(s) | 74 |
| BsuRI | GGCC | 2 cut(s) | 326, 1079 |
| BsuTUI | ATCGAT | 2 cut(s) | 1056, 1155 |
| BtgZI | GCGATG | 1 cut(s) | 1019 |
| BtsCI | GGATG | 2 cut(s) | 319, 700 |
| BtsI | GCAGTG | 2 cut(s) | 615, 1184 |
| BtsIMutI | CAGTG | 6 cut(s) | 53, 615, 771, 952, 1099, 1184 |
| BveI | ACCTGC | 2 cut(s) | 175, 359 |
| Cac8I | GCNNGC | 4 cut(s) | 132, 909, 923, 1077 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1183 |
| CciI | TCATGA | 1 cut(s) | 1048 |
| CfoI | GCGC | 1 cut(s) | 596 |
| Cfr10I | RCCGGY | 1 cut(s) | 58 |
| Cfr13I | GGNCC | 2 cut(s) | 325, 673 |
| ClaI | ATCGAT | 2 cut(s) | 1056, 1155 |
| CseI | GACGC | 1 cut(s) | 1160 |
| Csp6I | GTAC | 4 cut(s) | 22, 164, 405, 1128 |
| CviAII | CATG | 6 cut(s) | 329, 412, 806, 830, 922, 1049 |
| CviQI | GTAC | 4 cut(s) | 22, 164, 405, 1128 |
| DdeI | CTNAG | 3 cut(s) | 135, 648, 1148 |
| DpnI | GATC | 7 cut(s) | 53, 438, 828, 884, 1059, 1154, 1158 |
| DpnII | GATC | 7 cut(s) | 51, 436, 826, 882, 1057, 1152, 1156 |
| DraI | TTTAAA | 1 cut(s) | 955 |
| EciI | GGCGGA | 1 cut(s) | 1122 |
| Eco130I | CCWWGG | 2 cut(s) | 1068, 1136 |
| Eco147I | AGGCCT | 1 cut(s) | 1079 |
| Eco24I | GRGCYC | 1 cut(s) | 116 |
| Eco31I | GGTCTC | 2 cut(s) | 30, 1124 |
| Eco47I | GGWCC | 1 cut(s) | 673 |
| Eco88I | CYCGRG | 1 cut(s) | 308 |
| EcoRII | CCWGG | 1 cut(s) | 31 |
| EcoT14I | CCWWGG | 2 cut(s) | 1068, 1136 |
| EcoT38I | GRGCYC | 1 cut(s) | 116 |
| ErhI | CCWWGG | 2 cut(s) | 1068, 1136 |
| FaeI | CATG | 6 cut(s) | 332, 415, 809, 833, 925, 1052 |
| FatI | CATG | 6 cut(s) | 328, 411, 805, 829, 921, 1048 |
| FauI | CCCGC | 1 cut(s) | 284 |
| FauNDI | CATATG | 1 cut(s) | 441 |
| FblI | GTMKAC | 1 cut(s) | 347 |
| Fnu4HI | GCNGC | 3 cut(s) | 912, 1002, 1184 |
| FokI | GGATG | 2 cut(s) | 326, 707 |
| FriOI | GRGCYC | 1 cut(s) | 116 |
| Fsp4HI | GCNGC | 3 cut(s) | 912, 1002, 1184 |
| FspBI | CTAG | 1 cut(s) | 597 |
| GlaI | GCGC | 1 cut(s) | 595 |
| GluI | GCNGC | 3 cut(s) | 912, 1002, 1184 |
| GsuI | CTGGAG | 2 cut(s) | 54, 687 |
| HaeIII | GGCC | 2 cut(s) | 326, 1079 |
| HapII | CCGG | 2 cut(s) | 59, 155 |
| HgaI | GACGC | 1 cut(s) | 1160 |
| HhaI | GCGC | 1 cut(s) | 596 |
| Hin1II | CATG | 6 cut(s) | 332, 415, 809, 833, 925, 1052 |
| Hin6I | GCGC | 1 cut(s) | 594 |
| HinP1I | GCGC | 1 cut(s) | 594 |
| HinfI | GANTC | 4 cut(s) | 145, 635, 802, 942 |
| HpaII | CCGG | 2 cut(s) | 59, 155 |
| HphI | GGTGA | 1 cut(s) | 544 |
| Hpy166II | GTNNAC | 3 cut(s) | 348, 405, 673 |
| Hpy188I | TCNGA | 3 cut(s) | 150, 565, 801 |
| Hpy188III | TCNNGA | 6 cut(s) | 365, 692, 854, 1049, 1061, 1160 |
| Hpy8I | GTNNAC | 3 cut(s) | 348, 405, 673 |
| HpyAV | CCTTC | 3 cut(s) | 202, 236, 1055 |
| HpyCH4III | ACNGT | 2 cut(s) | 766, 1094 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 218, 323, 766, 904, 1001, 1081, 1183 |
| HpyF3I | CTNAG | 3 cut(s) | 135, 648, 1148 |
| Hsp92II | CATG | 6 cut(s) | 332, 415, 809, 833, 925, 1052 |
| HspAI | GCGC | 1 cut(s) | 594 |
| KpnI | GGTACC | 1 cut(s) | 25 |
| Kzo9I | GATC | 7 cut(s) | 51, 436, 826, 882, 1057, 1152, 1156 |
| LmnI | GCTCC | 3 cut(s) | 111, 753, 1072 |
| Lsp1109I | GCAGC | 3 cut(s) | 898, 988, 1170 |
| LweI | GCATC | 4 cut(s) | 247, 304, 409, 595 |
| MaeI | CTAG | 1 cut(s) | 597 |
| MalI | GATC | 7 cut(s) | 53, 438, 828, 884, 1059, 1154, 1158 |
| MboI | GATC | 7 cut(s) | 51, 436, 826, 882, 1057, 1152, 1156 |
| MboII | GAAGA | 3 cut(s) | 463, 626, 836 |
| MfeI | CAATTG | 3 cut(s) | 174, 729, 1107 |
| MflI | RGATCY | 2 cut(s) | 51, 882 |
| MhlI | GDGCHC | 1 cut(s) | 116 |
| MluCI | AATT | 6 cut(s) | 174, 559, 657, 729, 1107, 1195 |
| MluI | ACGCGT | 1 cut(s) | 905 |
| MlyI | GAGTC | 1 cut(s) | 644 |
| MmeI | TCCRAC | 1 cut(s) | 986 |
| MseI | TTAA | 8 cut(s) | 72, 299, 371, 480, 842, 954, 989, 1198 |
| MslI | CAYNNNNRTG | 3 cut(s) | 389, 720, 920 |
| MspI | CCGG | 2 cut(s) | 59, 155 |
| MspR9I | CCNGG | 2 cut(s) | 33, 155 |
| MunI | CAATTG | 3 cut(s) | 174, 729, 1107 |
| MvaI | CCWGG | 1 cut(s) | 33 |
| MvnI | CGCG | 1 cut(s) | 907 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 218, 323, 766, 904, 1001, 1081, 1183 |
| NciI | CCSGG | 1 cut(s) | 155 |
| NdeI | CATATG | 1 cut(s) | 441 |
| NdeII | GATC | 7 cut(s) | 51, 436, 826, 882, 1057, 1152, 1156 |
| NlaIII | CATG | 6 cut(s) | 332, 415, 809, 833, 925, 1052 |
| NlaIV | GGNNCC | 3 cut(s) | 23, 53, 113 |
| NspI | RCATGY | 1 cut(s) | 925 |
| PaeI | GCATGC | 1 cut(s) | 925 |
| PagI | TCATGA | 1 cut(s) | 1048 |
| PceI | AGGCCT | 1 cut(s) | 1079 |
| PfeI | GAWTC | 3 cut(s) | 145, 802, 942 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 32, 682 |
| PkrI | GCNGC | 3 cut(s) | 913, 1003, 1185 |
| PleI | GAGTC | 1 cut(s) | 643 |
| PpsI | GAGTC | 1 cut(s) | 643 |
| PshBI | ATTAAT | 1 cut(s) | 480 |
| Psp6I | CCWGG | 1 cut(s) | 31 |
| PspGI | CCWGG | 1 cut(s) | 31 |
| PspN4I | GGNNCC | 3 cut(s) | 23, 53, 113 |
| PspPI | GGNCC | 2 cut(s) | 325, 673 |
| PstI | CTGCAG | 2 cut(s) | 356, 1179 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1183 |
| PsuI | RGATCY | 2 cut(s) | 51, 882 |
| RsaI | GTAC | 4 cut(s) | 23, 165, 406, 1129 |
| RsaNI | GTAC | 4 cut(s) | 22, 164, 405, 1128 |
| RseI | CAYNNNNRTG | 3 cut(s) | 389, 720, 920 |
| SaqAI | TTAA | 8 cut(s) | 72, 299, 371, 480, 842, 954, 989, 1198 |
| SatI | GCNGC | 3 cut(s) | 912, 1002, 1184 |
| Sau3AI | GATC | 7 cut(s) | 51, 436, 826, 882, 1057, 1152, 1156 |
| Sau96I | GGNCC | 2 cut(s) | 325, 673 |
| SbfI | CCTGCAGG | 1 cut(s) | 356 |
| ScaI | AGTACT | 1 cut(s) | 1129 |
| SchI | GAGTC | 1 cut(s) | 644 |
| ScrFI | CCNGG | 2 cut(s) | 33, 155 |
| SdaI | CCTGCAGG | 1 cut(s) | 356 |
| SduI | GDGCHC | 1 cut(s) | 116 |
| SfaNI | GCATC | 4 cut(s) | 247, 304, 409, 595 |
| SfcI | CTRYAG | 3 cut(s) | 352, 762, 1175 |
| SinI | GGWCC | 1 cut(s) | 673 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 389, 720, 920 |
| SmlI | CTYRAG | 1 cut(s) | 446 |
| SmoI | CTYRAG | 1 cut(s) | 446 |
| SphI | GCATGC | 1 cut(s) | 925 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 356 |
| Sse9I | AATT | 6 cut(s) | 174, 559, 657, 729, 1107, 1195 |
| SseBI | AGGCCT | 1 cut(s) | 1079 |
| SsiI | CCGC | 5 cut(s) | 40, 291, 491, 896, 1133 |
| SspI | AATATT | 1 cut(s) | 457 |
| SspMI | CTAG | 1 cut(s) | 597 |
| StuI | AGGCCT | 1 cut(s) | 1079 |
| StyD4I | CCNGG | 2 cut(s) | 31, 153 |
| StyI | CCWWGG | 2 cut(s) | 1068, 1136 |
| TaaI | ACNGT | 2 cut(s) | 766, 1094 |
| TaqI | TCGA | 4 cut(s) | 435, 638, 1056, 1155 |
| TasI | AATT | 6 cut(s) | 174, 559, 657, 729, 1107, 1195 |
| TatI | WGTACW | 1 cut(s) | 1127 |
| TfiI | GAWTC | 3 cut(s) | 145, 802, 942 |
| Tru1I | TTAA | 8 cut(s) | 72, 299, 371, 480, 842, 954, 989, 1198 |
| Tru9I | TTAA | 8 cut(s) | 72, 299, 371, 480, 842, 954, 989, 1198 |
| TscAI | CASTG | 6 cut(s) | 53, 615, 771, 952, 1099, 1184 |
| TseI | GCWGC | 3 cut(s) | 911, 1001, 1183 |
| TspDTI | ATGAA | 6 cut(s) | 407, 656, 738, 794, 1022, 1037 |
| TspGWI | ACGGA | 1 cut(s) | 439 |
| TspRI | CASTG | 6 cut(s) | 53, 615, 771, 952, 1099, 1184 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 32, 682 |
| VpaK11BI | GGWCC | 1 cut(s) | 673 |
| VspI | ATTAAT | 1 cut(s) | 480 |
| XapI | RAATTY | 1 cut(s) | 657 |
| XceI | RCATGY | 1 cut(s) | 925 |
| XmiI | GTMKAC | 1 cut(s) | 347 |
| XspI | CTAG | 1 cut(s) | 597 |
| ZrmI | AGTACT | 1 cut(s) | 1129 |