pycom10g07740

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
9423871 .. 9425070
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g07740.1

Sequence Viewer

Length: 1200 bp
ATGGAAAAGTCCCAATCAAGGTACCCACAACCTGGAGACCGCAATCAGTGGATCCCACCGGCTCAAAACTTTAATCAAGGATACCCACAAGCTCAAAACCCTAATCAATGGAGCCCACAACCTCAAACGCCTGCTCAGGCTGTGAATCAGACCCCGGAAGTTGTACCTGCTTCAATTGATGATTTGAGGAGGTTGTGCCAAGAGGGGAAGGCTAAAGAAGCTGTTGAGATGATGGACAAAGAAGGGGTCAAGGCTGATGCTGATTGGTTTGGGTCTTTGTTTGAGTTGTGCGGGAGATTAAAGTCGCCCGAGGATGCGAAAAAGGCCCATGATTTCTTTTTGCAGTCTACCTGCAGGGGTAATCGTGAGTTAATCCATAAAATCATTGAAATGAATGGAAAGTGTACGAGCATGATTGATGCACGGAGAATGTTCGATCATATGCTTGAGAAGAATATTTATTCTTGGCATTTGATGATTAATGGGTATGCGGATAATGGGTTAGGAGATGATGGGTTGCAAATGTTTGAGGTGATGAGGGAGAAAGGGTTGCAACCCAATTCCGAAACTTTTGTTGCAGTAATCTCAACTTGCGCTAGTGCAGATGCAGTGGAAGAAGCATTTATACATTTTGAGTCGATGAAAACTGAGTGTGGAATTTCTGCTGGAGTGGACCATTATATGGGAGTTCTGGATGTGCTTGGAAAATGTGGTCATCTCAATGAAGCAATTGATTATATTGAGAAGCTCCTGTTTGAGCCTACAGTGCTGGTTTGGGAGGCTTTGAAAAGTTATGCTCGGATTCATGGAGATTTTGACCTTGAAGATCATGTGGAGGAGTTAATGGTTGCTCTTGACCCATCAAAGGCTGTTGTGAATAAGATCCCAACTCCACCGCCCAAAACGCGTGCTGCCATTAGCATGCTTGATGGCAAGAACAGAATCAGTGAGTTTAAAAATCCAACACTCTACAAGGACGATGAGAAGTTAAAGGCTCTTGCTGCGATGAAAGGAGGAGGTTATGTGCCAGACACAAGATATGTCCTTCATGACATCGATCAGGAAGCCAAGGAGCAGGCCTTGCTTTATCACAGTGAGCGTTTGGCAATTGCGTATGGTCTCATTAGTACTCCGCCAAGGCAAACTCTTAGGATCGATCAAGAACCTCTGCGTCTGCAGTGGCTGCCACAATGCAATTAA

Protein Analysis

400

Amino Acids

45.05

Weight (kDa)

5.26

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 152 - 199 4.9e-09 PPR repeat family
PPR PF01535 154 - 184 6.6e-06 PPR repeat
DYW_deaminase PF14432 340 - 387 1.1e-12 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 175, 359
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AccB7I CCANNNNNTGG 2 cut(s) 32, 682
AccI GTMKAC 1 cut(s) 347
AccII CGCG 1 cut(s) 907
AciI CCGC 5 cut(s) 40, 291, 491, 896, 1133
AclWI GGATC 4 cut(s) 46, 59, 877, 1160
AcsI RAATTY 1 cut(s) 657
AfaI GTAC 4 cut(s) 23, 165, 406, 1129
AfiI CCNNNNNNNGG 4 cut(s) 18, 32, 682, 865
AflIII ACRYGT 1 cut(s) 905
AgsI TTSAA 4 cut(s) 174, 389, 787, 824
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 3 cut(s) 92, 221, 748
AluI AGCT 3 cut(s) 92, 221, 748
Alw26I GTCTC 2 cut(s) 30, 1124
AlwI GGATC 4 cut(s) 46, 59, 877, 1160
AlwNI CAGNNNCTG 1 cut(s) 1183
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 2 cut(s) 324, 1077
ApeKI GCWGC 3 cut(s) 911, 1001, 1183
ApoI RAATTY 1 cut(s) 657
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
AseI ATTAAT 1 cut(s) 480
Asp718I GGTACC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 2 cut(s) 325, 673
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 544
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 1 cut(s) 673
BamHI GGATCC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 116
BarI GAAGNNNNNNTAC 2 cut(s) 609, 641
BbvI GCAGC 3 cut(s) 898, 988, 1170
BccI CCATC 4 cut(s) 226, 506, 868, 923
BciT130I CCWGG 1 cut(s) 33
BciVI GTATCC 1 cut(s) 74
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 2 cut(s) 30, 1124
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 3 cut(s) 352, 762, 1175
BfuAI ACCTGC 2 cut(s) 175, 359
BfuI GTATCC 1 cut(s) 74
BisI GCNGC 3 cut(s) 912, 1002, 1184
BlsI GCNGC 3 cut(s) 913, 1003, 1185
BmcAI AGTACT 1 cut(s) 1129
Bme1390I CCNGG 2 cut(s) 33, 155
Bme18I GGWCC 1 cut(s) 673
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 325, 673
BmiI GGNNCC 3 cut(s) 23, 53, 113
BmrFI CCNGG 2 cut(s) 33, 155
BmsI GCATC 4 cut(s) 247, 304, 409, 595
BpmI CTGGAG 2 cut(s) 54, 687
Bpu10I CCTNAGC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 155
Bsa29I ATCGAT 2 cut(s) 1056, 1155
BsaI GGTCTC 2 cut(s) 30, 1124
BsaJI CCNNGG 4 cut(s) 153, 309, 1068, 1136
BsaXI ACNNNNNCTCC 4 cut(s) 533, 563, 1008, 1038
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 32, 682, 865
Bse118I RCCGGY 1 cut(s) 58
BseBI CCWGG 1 cut(s) 33
BseCI ATCGAT 2 cut(s) 1056, 1155
BseDI CCNNGG 4 cut(s) 153, 309, 1068, 1136
BseGI GGATG 2 cut(s) 319, 700
BseLI CCNNNNNNNGG 4 cut(s) 18, 32, 682, 865
BseMII CTCAG 2 cut(s) 149, 639
BseRI GAGGAG 3 cut(s) 202, 851, 1029
BseXI GCAGC 3 cut(s) 898, 988, 1170
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 907
BshFI GGCC 2 cut(s) 326, 1079
BshNI GGYRCC 1 cut(s) 21
BshVI ATCGAT 2 cut(s) 1056, 1155
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 2 cut(s) 59, 155
BslI CCNNNNNNNGG 4 cut(s) 18, 32, 682, 865
BsmAI GTCTC 2 cut(s) 30, 1124
BsnI GGCC 2 cut(s) 326, 1079
Bso31I GGTCTC 2 cut(s) 30, 1124
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 7 cut(s) 51, 436, 826, 882, 1057, 1152, 1156
BspACI CCGC 5 cut(s) 40, 291, 491, 896, 1133
BspANI GGCC 2 cut(s) 326, 1079
BspCNI CTCAG 2 cut(s) 148, 640
BspDI ATCGAT 2 cut(s) 1056, 1155
BspFNI CGCG 1 cut(s) 907
BspHI TCATGA 1 cut(s) 1048
BspLI GGNNCC 3 cut(s) 23, 53, 113
BspMAI CTGCAG 2 cut(s) 356, 1179
BspMI ACCTGC 2 cut(s) 175, 359
BspPI GGATC 4 cut(s) 46, 59, 877, 1160
BspT107I GGYRCC 1 cut(s) 21
BspTNI GGTCTC 2 cut(s) 30, 1124
BsrFI RCCGGY 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 4 cut(s) 153, 309, 1068, 1136
BssMI GATC 7 cut(s) 51, 436, 826, 882, 1057, 1152, 1156
BssT1I CCWWGG 2 cut(s) 1068, 1136
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 766, 1094
BstAPI GCANNNNNTGC 2 cut(s) 1081, 1183
BstC8I GCNNGC 4 cut(s) 132, 909, 923, 1077
BstDEI CTNAG 3 cut(s) 135, 648, 1148
BstF5I GGATG 2 cut(s) 319, 700
BstFNI CGCG 1 cut(s) 907
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 7 cut(s) 54, 439, 829, 885, 1060, 1155, 1159
BstMAI GTCTC 2 cut(s) 30, 1124
BstMBI GATC 7 cut(s) 51, 436, 826, 882, 1057, 1152, 1156
BstMWI GCNNNNNNNGC 7 cut(s) 218, 323, 766, 904, 1001, 1081, 1183
BstNI CCWGG 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 925
BstSCI CCNGG 2 cut(s) 31, 153
BstSFI CTRYAG 3 cut(s) 352, 762, 1175
BstUI CGCG 1 cut(s) 907
BstV1I GCAGC 3 cut(s) 898, 988, 1170
BstX2I RGATCY 2 cut(s) 51, 882
BstYI RGATCY 2 cut(s) 51, 882
Bsu15I ATCGAT 2 cut(s) 1056, 1155
BsuI GTATCC 1 cut(s) 74
BsuRI GGCC 2 cut(s) 326, 1079
BsuTUI ATCGAT 2 cut(s) 1056, 1155
BtgZI GCGATG 1 cut(s) 1019
BtsCI GGATG 2 cut(s) 319, 700
BtsI GCAGTG 2 cut(s) 615, 1184
BtsIMutI CAGTG 6 cut(s) 53, 615, 771, 952, 1099, 1184
BveI ACCTGC 2 cut(s) 175, 359
Cac8I GCNNGC 4 cut(s) 132, 909, 923, 1077
CaiI CAGNNNCTG 1 cut(s) 1183
CciI TCATGA 1 cut(s) 1048
CfoI GCGC 1 cut(s) 596
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 325, 673
ClaI ATCGAT 2 cut(s) 1056, 1155
CseI GACGC 1 cut(s) 1160
Csp6I GTAC 4 cut(s) 22, 164, 405, 1128
CviAII CATG 6 cut(s) 329, 412, 806, 830, 922, 1049
CviQI GTAC 4 cut(s) 22, 164, 405, 1128
DdeI CTNAG 3 cut(s) 135, 648, 1148
DpnI GATC 7 cut(s) 53, 438, 828, 884, 1059, 1154, 1158
DpnII GATC 7 cut(s) 51, 436, 826, 882, 1057, 1152, 1156
DraI TTTAAA 1 cut(s) 955
EciI GGCGGA 1 cut(s) 1122
Eco130I CCWWGG 2 cut(s) 1068, 1136
Eco147I AGGCCT 1 cut(s) 1079
Eco24I GRGCYC 1 cut(s) 116
Eco31I GGTCTC 2 cut(s) 30, 1124
Eco47I GGWCC 1 cut(s) 673
Eco88I CYCGRG 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 31
EcoT14I CCWWGG 2 cut(s) 1068, 1136
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 2 cut(s) 1068, 1136
FaeI CATG 6 cut(s) 332, 415, 809, 833, 925, 1052
FatI CATG 6 cut(s) 328, 411, 805, 829, 921, 1048
FauI CCCGC 1 cut(s) 284
FauNDI CATATG 1 cut(s) 441
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 3 cut(s) 912, 1002, 1184
FokI GGATG 2 cut(s) 326, 707
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 912, 1002, 1184
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 595
GluI GCNGC 3 cut(s) 912, 1002, 1184
GsuI CTGGAG 2 cut(s) 54, 687
HaeIII GGCC 2 cut(s) 326, 1079
HapII CCGG 2 cut(s) 59, 155
HgaI GACGC 1 cut(s) 1160
HhaI GCGC 1 cut(s) 596
Hin1II CATG 6 cut(s) 332, 415, 809, 833, 925, 1052
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HinfI GANTC 4 cut(s) 145, 635, 802, 942
HpaII CCGG 2 cut(s) 59, 155
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 3 cut(s) 348, 405, 673
Hpy188I TCNGA 3 cut(s) 150, 565, 801
Hpy188III TCNNGA 6 cut(s) 365, 692, 854, 1049, 1061, 1160
Hpy8I GTNNAC 3 cut(s) 348, 405, 673
HpyAV CCTTC 3 cut(s) 202, 236, 1055
HpyCH4III ACNGT 2 cut(s) 766, 1094
HpyF10VI GCNNNNNNNGC 7 cut(s) 218, 323, 766, 904, 1001, 1081, 1183
HpyF3I CTNAG 3 cut(s) 135, 648, 1148
Hsp92II CATG 6 cut(s) 332, 415, 809, 833, 925, 1052
HspAI GCGC 1 cut(s) 594
KpnI GGTACC 1 cut(s) 25
Kzo9I GATC 7 cut(s) 51, 436, 826, 882, 1057, 1152, 1156
LmnI GCTCC 3 cut(s) 111, 753, 1072
Lsp1109I GCAGC 3 cut(s) 898, 988, 1170
LweI GCATC 4 cut(s) 247, 304, 409, 595
MaeI CTAG 1 cut(s) 597
MalI GATC 7 cut(s) 53, 438, 828, 884, 1059, 1154, 1158
MboI GATC 7 cut(s) 51, 436, 826, 882, 1057, 1152, 1156
MboII GAAGA 3 cut(s) 463, 626, 836
MfeI CAATTG 3 cut(s) 174, 729, 1107
MflI RGATCY 2 cut(s) 51, 882
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 6 cut(s) 174, 559, 657, 729, 1107, 1195
MluI ACGCGT 1 cut(s) 905
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 1 cut(s) 986
MseI TTAA 8 cut(s) 72, 299, 371, 480, 842, 954, 989, 1198
MslI CAYNNNNRTG 3 cut(s) 389, 720, 920
MspI CCGG 2 cut(s) 59, 155
MspR9I CCNGG 2 cut(s) 33, 155
MunI CAATTG 3 cut(s) 174, 729, 1107
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 1 cut(s) 907
MwoI GCNNNNNNNGC 7 cut(s) 218, 323, 766, 904, 1001, 1081, 1183
NciI CCSGG 1 cut(s) 155
NdeI CATATG 1 cut(s) 441
NdeII GATC 7 cut(s) 51, 436, 826, 882, 1057, 1152, 1156
NlaIII CATG 6 cut(s) 332, 415, 809, 833, 925, 1052
NlaIV GGNNCC 3 cut(s) 23, 53, 113
NspI RCATGY 1 cut(s) 925
PaeI GCATGC 1 cut(s) 925
PagI TCATGA 1 cut(s) 1048
PceI AGGCCT 1 cut(s) 1079
PfeI GAWTC 3 cut(s) 145, 802, 942
PflMI CCANNNNNTGG 2 cut(s) 32, 682
PkrI GCNGC 3 cut(s) 913, 1003, 1185
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 3 cut(s) 23, 53, 113
PspPI GGNCC 2 cut(s) 325, 673
PstI CTGCAG 2 cut(s) 356, 1179
PstNI CAGNNNCTG 1 cut(s) 1183
PsuI RGATCY 2 cut(s) 51, 882
RsaI GTAC 4 cut(s) 23, 165, 406, 1129
RsaNI GTAC 4 cut(s) 22, 164, 405, 1128
RseI CAYNNNNRTG 3 cut(s) 389, 720, 920
SaqAI TTAA 8 cut(s) 72, 299, 371, 480, 842, 954, 989, 1198
SatI GCNGC 3 cut(s) 912, 1002, 1184
Sau3AI GATC 7 cut(s) 51, 436, 826, 882, 1057, 1152, 1156
Sau96I GGNCC 2 cut(s) 325, 673
SbfI CCTGCAGG 1 cut(s) 356
ScaI AGTACT 1 cut(s) 1129
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 2 cut(s) 33, 155
SdaI CCTGCAGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 4 cut(s) 247, 304, 409, 595
SfcI CTRYAG 3 cut(s) 352, 762, 1175
SinI GGWCC 1 cut(s) 673
SmiMI CAYNNNNRTG 3 cut(s) 389, 720, 920
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SphI GCATGC 1 cut(s) 925
Sse8387I CCTGCAGG 1 cut(s) 356
Sse9I AATT 6 cut(s) 174, 559, 657, 729, 1107, 1195
SseBI AGGCCT 1 cut(s) 1079
SsiI CCGC 5 cut(s) 40, 291, 491, 896, 1133
SspI AATATT 1 cut(s) 457
SspMI CTAG 1 cut(s) 597
StuI AGGCCT 1 cut(s) 1079
StyD4I CCNGG 2 cut(s) 31, 153
StyI CCWWGG 2 cut(s) 1068, 1136
TaaI ACNGT 2 cut(s) 766, 1094
TaqI TCGA 4 cut(s) 435, 638, 1056, 1155
TasI AATT 6 cut(s) 174, 559, 657, 729, 1107, 1195
TatI WGTACW 1 cut(s) 1127
TfiI GAWTC 3 cut(s) 145, 802, 942
Tru1I TTAA 8 cut(s) 72, 299, 371, 480, 842, 954, 989, 1198
Tru9I TTAA 8 cut(s) 72, 299, 371, 480, 842, 954, 989, 1198
TscAI CASTG 6 cut(s) 53, 615, 771, 952, 1099, 1184
TseI GCWGC 3 cut(s) 911, 1001, 1183
TspDTI ATGAA 6 cut(s) 407, 656, 738, 794, 1022, 1037
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 6 cut(s) 53, 615, 771, 952, 1099, 1184
Van91I CCANNNNNTGG 2 cut(s) 32, 682
VpaK11BI GGWCC 1 cut(s) 673
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 1 cut(s) 657
XceI RCATGY 1 cut(s) 925
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 1 cut(s) 597
ZrmI AGTACT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.