Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019183.1

Orthogroup ID

OG0006117

Physical Location & Seq

Genomic Coordinates Reverse (-)

1779 .. 5050

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019183.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ctggaaaccgtaaccagtcgaacaacaacaatcaatcaggaggagaaccagaacacagttgttgtaccaccttcaattgacgatttgaggcggttgtgccgagaagggaaggtgaaggaagctattgagttgatgggcaaagaaggggtgaaggctgatgctgattgttttcattctttgtttgagttgtgtgggaattcgaagtcgctagagaatgcaaagaaagttcatgatttctttttgcagtctacatgtaggggtaatagggacttgagccataaagtaatcgaaatgtatggaaaatgtggaagcatgactgatgccaggagagtgtttgatcacctgcttgagaagaacattgattcttggcatttgatgataaactggtatgcggagaacgggttaggggatgatgggttgaacatgtttgagtcgatgagggagcaaggtttgaaacccaattcggaaacattccttgcagtcttttcggcttgtgccagtgcagatgctgttgaagaagcatttatacattttgagtcgatgaaaactgattacggatttgatcctgtagtggagcattatttggggattcttgatgtacttggaaaatgcggtcatctgaatgaaacagttgagtatattgagaagctcccatttgagccgactgtgacagtttgggaggcattgaggaattatgcccaggttcatggagatattgatcttgaagatcacgctgaggagttaatggttgctcttgacccgtcaaaggctggtaagattccaactccaccacctagaaagcgtagtgctatttgcatgcttgatgggaagaacagaaccagtgcgtttaaaaatcccacattgtacaaggattgtgaaaagttaaaggctctcaattcgatgagaggagggggttatgttccagacacaagatatgttcttcatgacattgaccaggaggctaaggagcaagcactgctctatcacagtgagcttttggcaatcgcatttggcctgattagtactctggcaagacacctcttaggatcattaacaacctccgtgtctgtggtgactgccacaagatcatgtgctaatcatttggaacagaaatttgatgcctcttgggacccccatcctgctgatggtgcaatgtcccccttacctggtcgcacaagggtggagaccgaaggggatgcaaaagcagtgattcaagcccttgtgtacatggagatacgttctcctgggggtaatggagtagcacttagttggcaagaagagcactatcttgctcataattgtttcttgtttgcggtagaacctccgtggccgtcttcgtgtctggaggctgatgtacttgatgtaattgttgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

458

Amino Acids

50.97

Weight (kDa)

5.13

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15690
fragaria_vesca	FvH4_2g06150
malus_domestica	MD05G1080000.v1.1
prunus_persica	Prupe.8G123800_v2.0.a1
pyrus_communis	pycom05g07310 pycom10g07740
rosa_chinensis	RchiOBHm_Chr6g0257041 RchiOBHm_Chr7g0228581
rosa_laevigata	RLG00000001553 RLG00000014672
rosa_multiflora	Rmu_sc0008871.1_g000003 Rmu_sc0011334.1_g000001 Rmu_sc0019183.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231050 Rroxscaffold_7G00208450
rosa_rugosa	Rorug05G0575600 Rorug07G0250600
rosa_samantha	Rh6AG093700 Rh6BG084500 Rh6CG081200 Rh6DG076600 Rh7AG402800 Rh7BG383700 Rh7CG422100 Rh7DG398500
rosa_wichuraiana	Rw6G008060 Rw7G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	351
Acc36I	ACCTGC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	248
AciI	CCGC	4 cut(s)	91, 392, 612, 1313
AclWI	GGATC	2 cut(s)	557, 1054
AcoI	YGGCCR	1 cut(s)	1328
AcsI	RAATTY	2 cut(s)	196, 1112
AfaI	GTAC	6 cut(s)	66, 600, 866, 1024, 1226, 1356
AfiI	CCNNNNNNNGG	3 cut(s)	766, 1145, 1166
AflIII	ACRYGT	2 cut(s)	251, 423
AgsI	TTSAA	6 cut(s)	75, 421, 454, 515, 725, 1214
AjnI	CCWGG	5 cut(s)	323, 699, 954, 1165, 1243
AleI	CACNNNNGTG	1 cut(s)	1178
AluBI	AGCT	3 cut(s)	122, 649, 994
AluI	AGCT	3 cut(s)	122, 649, 994
Alw21I	GWGCWC	1 cut(s)	1284
Alw26I	GTCTC	1 cut(s)	1178
AlwI	GGATC	2 cut(s)	557, 1054
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	2 cut(s)	1012, 1328
ApoI	RAATTY	2 cut(s)	196, 1112
AspS9I	GGNCC	1 cut(s)	1129
AsuHPI	GGTGA	4 cut(s)	124, 160, 332, 1084
AsuII	TTCGAA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	1129
BarI	GAAGNNNNNNTAC	2 cut(s)	510, 542
BbsI	GAAGAC	1 cut(s)	1326
Bbv12I	GWGCWC	1 cut(s)	1284
BbvCI	CCTCAGC	1 cut(s)	735
BccI	CCATC	5 cut(s)	127, 407, 818, 1139, 1143
BceAI	ACGGC	1 cut(s)	1315
BcgI	CGANNNNNNTGC	4 cut(s)	468, 502, 1178, 1212
BciT130I	CCWGG	5 cut(s)	325, 701, 956, 1167, 1245
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	1178
BfaI	CTAG	2 cut(s)	209, 795
BfmI	CTRYAG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	351
BmcAI	AGTACT	1 cut(s)	1024
Bme1390I	CCNGG	5 cut(s)	325, 701, 956, 1167, 1245
Bme18I	GGWCC	1 cut(s)	1129
BmgT120I	GGNCC	1 cut(s)	1129
BmiI	GGNNCC	2 cut(s)	1130, 1131
BmrFI	CCNGG	5 cut(s)	325, 701, 956, 1167, 1245
BmsI	GCATC	5 cut(s)	148, 310, 496, 1108, 1186
BpiI	GAAGAC	1 cut(s)	1326
BpmI	CTGGAG	1 cut(s)	1364
Bpu10I	CCTNAGC	2 cut(s)	735, 963
Bpu14I	TTCGAA	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	292, 368
BsaBI	GATNNNNATC	1 cut(s)	717
BsaI	GGTCTC	1 cut(s)	1178
BsaJI	CCNNGG	3 cut(s)	699, 1244, 1325
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	3 cut(s)	766, 1145, 1166
Bse1I	ACTGG	4 cut(s)	15, 389, 498, 840
Bse3DI	GCAATG	1 cut(s)	1158
Bse8I	GATNNNNATC	1 cut(s)	717
BseBI	CCWGG	5 cut(s)	325, 701, 956, 1167, 1245
BseDI	CCNNGG	3 cut(s)	699, 1244, 1325
BseGI	GGATG	3 cut(s)	415, 1135, 1201
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	3 cut(s)	766, 1145, 1166
BseMI	GCAATG	1 cut(s)	1158
BseMII	CTCAG	1 cut(s)	726
BseNI	ACTGG	4 cut(s)	15, 389, 498, 840
BseRI	GAGGAG	3 cut(s)	56, 752, 921
BsgI	GTGCAG	1 cut(s)	522
BshFI	GGCC	2 cut(s)	1014, 1330
BsiHKAI	GWGCWC	1 cut(s)	1284
BslFI	GGGAC	3 cut(s)	281, 1141, 1142
BslI	CCNNNNNNNGG	3 cut(s)	766, 1145, 1166
BsmAI	GTCTC	1 cut(s)	1178
BsmFI	GGGAC	3 cut(s)	281, 1141, 1142
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	1014, 1330
Bso31I	GGTCTC	1 cut(s)	1178
Bsp119I	TTCGAA	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	1284
Bsp1407I	TGTACA	2 cut(s)	864, 1224
Bsp143I	GATC	6 cut(s)	337, 562, 718, 727, 1046, 1085
BspACI	CCGC	4 cut(s)	91, 392, 612, 1313
BspANI	GGCC	2 cut(s)	1014, 1330
BspCNI	CTCAG	1 cut(s)	727
BspHI	TCATGA	2 cut(s)	229, 943
BspLI	GGNNCC	2 cut(s)	1130, 1131
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	2 cut(s)	557, 1054
BspQI	GCTCTTC	1 cut(s)	1272
BspT104I	TTCGAA	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	1178
BsrDI	GCAATG	1 cut(s)	1158
BsrGI	TGTACA	2 cut(s)	864, 1224
BsrI	ACTGG	4 cut(s)	15, 389, 498, 840
BssECI	CCNNGG	3 cut(s)	699, 1244, 1325
BssMI	GATC	6 cut(s)	337, 562, 718, 727, 1046, 1085
Bst2UI	CCWGG	5 cut(s)	325, 701, 956, 1167, 1245
Bst4CI	ACNGT	6 cut(s)	10, 58, 631, 667, 673, 989
Bst6I	CTCTTC	1 cut(s)	1272
BstAPI	GCANNNNNTGC	1 cut(s)	976
BstAUI	TGTACA	2 cut(s)	864, 1224
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	818, 972
BstDEI	CTNAG	4 cut(s)	735, 963, 1042, 1265
BstDSI	CCRYGG	1 cut(s)	1325
BstF5I	GGATG	3 cut(s)	415, 1135, 1201
BstKTI	GATC	6 cut(s)	340, 565, 721, 730, 1049, 1088
BstMAI	GTCTC	1 cut(s)	1178
BstMBI	GATC	6 cut(s)	337, 562, 718, 727, 1046, 1085
BstMWI	GCNNNNNNNGC	3 cut(s)	976, 1148, 1279
BstNI	CCWGG	5 cut(s)	325, 701, 956, 1167, 1245
BstNSI	RCATGY	3 cut(s)	255, 427, 820
BstSCI	CCNGG	5 cut(s)	323, 699, 954, 1165, 1243
BstSFI	CTRYAG	1 cut(s)	567
BstV2I	GAAGAC	1 cut(s)	1326
BstXI	CCANNNNNNTGG	1 cut(s)	707
BsuRI	GGCC	2 cut(s)	1014, 1330
BtgI	CCRYGG	1 cut(s)	1325
BtsCI	GGATG	3 cut(s)	415, 1135, 1201
BtsI	GCAGTG	2 cut(s)	974, 1212
BtsIMutI	CAGTG	5 cut(s)	505, 847, 974, 994, 1212
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	818, 972
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	2 cut(s)	229, 943
Cfr13I	GGNCC	1 cut(s)	1129
CsiI	ACCWGGT	1 cut(s)	1165
Csp6I	GTAC	6 cut(s)	65, 599, 865, 1023, 1225, 1355
CviAII	CATG	9 cut(s)	230, 252, 313, 424, 707, 817, 944, 1089, 1228
CviQI	GTAC	6 cut(s)	65, 599, 865, 1023, 1225, 1355
DdeI	CTNAG	4 cut(s)	735, 963, 1042, 1265
DpnI	GATC	6 cut(s)	339, 564, 720, 729, 1048, 1087
DpnII	GATC	6 cut(s)	337, 562, 718, 727, 1046, 1085
DraI	TTTAAA	1 cut(s)	850
EaeI	YGGCCR	1 cut(s)	1328
Eam1104I	CTCTTC	1 cut(s)	1272
EarI	CTCTTC	1 cut(s)	1272
Eco31I	GGTCTC	1 cut(s)	1178
Eco47I	GGWCC	1 cut(s)	1129
EcoO109I	RGGNCCY	1 cut(s)	1129
EcoRI	GAATTC	1 cut(s)	196
EcoRII	CCWGG	5 cut(s)	323, 699, 954, 1165, 1243
FaeI	CATG	9 cut(s)	233, 255, 316, 427, 710, 820, 947, 1092, 1231
FaqI	GGGAC	3 cut(s)	281, 1141, 1142
FatI	CATG	9 cut(s)	229, 251, 312, 423, 706, 816, 943, 1088, 1227
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	248
FokI	GGATG	3 cut(s)	422, 1122, 1208
FspBI	CTAG	2 cut(s)	209, 795
GsuI	CTGGAG	1 cut(s)	1364
HaeIII	GGCC	2 cut(s)	1014, 1330
Hin1II	CATG	9 cut(s)	233, 255, 316, 427, 710, 820, 947, 1092, 1231
HinfI	GANTC	6 cut(s)	362, 431, 536, 589, 778, 1210
HphI	GGTGA	4 cut(s)	124, 160, 332, 1084
Hpy166II	GTNNAC	2 cut(s)	249, 1225
Hpy188I	TCNGA	2 cut(s)	466, 621
Hpy188III	TCNNGA	8 cut(s)	38, 230, 593, 722, 755, 923, 944, 1343
Hpy8I	GTNNAC	2 cut(s)	249, 1225
HpyAV	CCTTC	7 cut(s)	81, 98, 103, 109, 137, 145, 1184
HpyCH4III	ACNGT	6 cut(s)	10, 58, 631, 667, 673, 989
HpyCH4IV	ACGT	1 cut(s)	1237
HpyCH4V	TGCA	7 cut(s)	218, 244, 479, 503, 816, 1151, 1199
HpyF10VI	GCNNNNNNNGC	3 cut(s)	976, 1148, 1279
HpyF3I	CTNAG	4 cut(s)	735, 963, 1042, 1265
HpySE526I	ACGT	1 cut(s)	1237
Hsp92II	CATG	9 cut(s)	233, 255, 316, 427, 710, 820, 947, 1092, 1231
KflI	GGGWCCC	1 cut(s)	1129
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	6 cut(s)	337, 562, 718, 727, 1046, 1085
LguI	GCTCTTC	1 cut(s)	1272
LmnI	GCTCC	4 cut(s)	442, 574, 654, 967
LweI	GCATC	5 cut(s)	148, 310, 496, 1108, 1186
MabI	ACCWGGT	1 cut(s)	1165
MaeI	CTAG	2 cut(s)	209, 795
MaeII	ACGT	1 cut(s)	1237
MaeIII	GTNAC	3 cut(s)	10, 667, 1072
MalI	GATC	6 cut(s)	339, 564, 720, 729, 1048, 1087
MboI	GATC	6 cut(s)	337, 562, 718, 727, 1046, 1085
MboII	GAAGA	7 cut(s)	364, 527, 737, 841, 932, 1289, 1326
MfeI	CAATTG	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	1284
MluCI	AATT	8 cut(s)	75, 196, 460, 691, 895, 1112, 1297, 1365
MlyI	GAGTC	2 cut(s)	440, 545
MmeI	TCCRAC	1 cut(s)	806
MseI	TTAA	5 cut(s)	743, 849, 884, 1052, 1375
MslI	CAYNNNNRTG	2 cut(s)	621, 1178
MspR9I	CCNGG	5 cut(s)	325, 701, 956, 1167, 1245
MunI	CAATTG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	5 cut(s)	325, 701, 956, 1167, 1245
MwoI	GCNNNNNNNGC	3 cut(s)	976, 1148, 1279
NdeII	GATC	6 cut(s)	337, 562, 718, 727, 1046, 1085
NlaIII	CATG	9 cut(s)	233, 255, 316, 427, 710, 820, 947, 1092, 1231
NlaIV	GGNNCC	2 cut(s)	1130, 1131
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	2 cut(s)	667, 1072
NspI	RCATGY	3 cut(s)	255, 427, 820
NspV	TTCGAA	1 cut(s)	200
OliI	CACNNNNGTG	1 cut(s)	1178
PaeI	GCATGC	1 cut(s)	820
PagI	TCATGA	2 cut(s)	229, 943
PaqCI	CACCTGC	1 cut(s)	351
PciI	ACATGT	2 cut(s)	251, 423
PciSI	GCTCTTC	1 cut(s)	1272
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	362, 589, 778, 1210
PleI	GAGTC	2 cut(s)	439, 544
PpsI	GAGTC	2 cut(s)	439, 544
PpuMI	RGGWCCY	1 cut(s)	1129
PscI	ACATGT	2 cut(s)	251, 423
Psp5II	RGGWCCY	1 cut(s)	1129
Psp6I	CCWGG	5 cut(s)	323, 699, 954, 1165, 1243
PspGI	CCWGG	5 cut(s)	323, 699, 954, 1165, 1243
PspN4I	GGNNCC	2 cut(s)	1130, 1131
PspPI	GGNCC	1 cut(s)	1129
PspPPI	RGGWCCY	1 cut(s)	1129
PstNI	CAGNNNCTG	1 cut(s)	509
RsaI	GTAC	6 cut(s)	66, 600, 866, 1024, 1226, 1356
RsaNI	GTAC	6 cut(s)	65, 599, 865, 1023, 1225, 1355
RseI	CAYNNNNRTG	2 cut(s)	621, 1178
SapI	GCTCTTC	1 cut(s)	1272
SaqAI	TTAA	5 cut(s)	743, 849, 884, 1052, 1375
Sau3AI	GATC	6 cut(s)	337, 562, 718, 727, 1046, 1085
Sau96I	GGNCC	1 cut(s)	1129
ScaI	AGTACT	1 cut(s)	1024
SchI	GAGTC	2 cut(s)	440, 545
ScrFI	CCNGG	5 cut(s)	325, 701, 956, 1167, 1245
SduI	GDGCHC	1 cut(s)	1284
SexAI	ACCWGGT	1 cut(s)	1165
SfaNI	GCATC	5 cut(s)	148, 310, 496, 1108, 1186
SfcI	CTRYAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	200
SinI	GGWCC	1 cut(s)	1129
SmiMI	CAYNNNNRTG	2 cut(s)	621, 1178
SmlI	CTYRAG	2 cut(s)	271, 347
SmoI	CTYRAG	2 cut(s)	271, 347
SphI	GCATGC	1 cut(s)	820
Sse9I	AATT	8 cut(s)	75, 196, 460, 691, 895, 1112, 1297, 1365
SsiI	CCGC	4 cut(s)	91, 392, 612, 1313
SspMI	CTAG	2 cut(s)	209, 795
StyD4I	CCNGG	5 cut(s)	323, 699, 954, 1165, 1243
TaaI	ACNGT	6 cut(s)	10, 58, 631, 667, 673, 989
TaiI	ACGT	1 cut(s)	1240
TaqI	TCGA	6 cut(s)	19, 200, 288, 434, 539, 899
TaqII	GACCGA	1 cut(s)	1202
TasI	AATT	8 cut(s)	75, 196, 460, 691, 895, 1112, 1297, 1365
TatI	WGTACW	5 cut(s)	598, 864, 1022, 1224, 1354
TfiI	GAWTC	4 cut(s)	362, 589, 778, 1210
Tru1I	TTAA	5 cut(s)	743, 849, 884, 1052, 1375
Tru9I	TTAA	5 cut(s)	743, 849, 884, 1052, 1375
TscAI	CASTG	5 cut(s)	505, 847, 981, 994, 1212
TseFI	GTSAC	2 cut(s)	667, 1072
Tsp45I	GTSAC	2 cut(s)	667, 1072
TspDTI	ATGAA	6 cut(s)	161, 218, 557, 639, 695, 932
TspGWI	ACGGA	3 cut(s)	570, 1051, 1314
TspRI	CASTG	5 cut(s)	505, 847, 981, 994, 1212
VpaK11BI	GGWCC	1 cut(s)	1129
XapI	RAATTY	2 cut(s)	196, 1112
XceI	RCATGY	3 cut(s)	255, 427, 820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1142
XmiI	GTMKAC	1 cut(s)	248
XspI	CTAG	2 cut(s)	209, 795
ZrmI	AGTACT	1 cut(s)	1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.