AT2G17033

repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010152
Physical Location & Seq
Forward (+)
7401117 .. 7403661
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17033.2

Sequence Viewer

Length: 1515 bp
ATGGCGGCTTTGATCCAGACCATCCATGGTGTGGTTGTTACCAGAACCTTGACTCTTGTTTATCCTTCTACCTTTACGTCCAGACACAAAGCTCTGAACCAGATGACAAGTAGCAGTAACAGCGGCTTGCGACGGTTCCTGTTCACTCCGCCTCAGCGGCTAAGCCAAGGTATCTGTTACTGGGGAGCAGAGCTAAGCAACAATGTGTCATGGACTTACAAAACGAAAATGGTTGTTCGATCCAAGGCCGGAGCAGTGCCTCTGATGAAGCATGGCGACCGGTTTCTCTCCTCTCTCTCGTCTCCAGCCTTAGCTGGTGATCCGTCAGCGATAAACCGACACATTAAGAAGTTTGTGGCTGCTTCACCCAAATCAGTTGCTCTCAATGTCCTCTCTCATCTCCTCTCTGATCAAACTTCCCATCCTCATCTCTCCTTCTTTGCTCTGTCTTTGTATTCGGAAATTACTGAAGCGTCGTGGTTTGATTGGAATCCTAAACTCATTGCTGAACTTATTGCTTTGCTCAATAAACAAGAAAGATTTGATGAATCAGAAACGCTACTTTCTACTGCGGTTTCGAGACTGAAGTCAAATGAAAGAGACTTTACTCTCTTCCTCTGCAATTTGGTTGAATCAAATTCTAAACAAGGGTCTATACAAGGTTTCAGTGAAGCATCTTTTCGTTTGAGAGAGATAATCCAAAGATCATCATCAGTTTATGTCAAAACTCAAGCTTACAAGTCTATGGTTTCTGGATTATGTAACATGGACCAGCCTCATGATGCGGAAAGAGTTATCGAGGAGATGAGAATGGAAAAAATAAAGCCGGGATTGTTTGAATATAAGTCTGTTCTATACGGCTATGGAAGATTAGGATTGTTTGACGATATGAACAGAGTAGTACACAGAATGGGAACAGAAGGTCACAAAATCGACACAGTTTGTTCAAATATGGTTCTCTCTTCCTATGGAGCTCATGATGCATTGCCCCAAATGGGTTCTTGGTTACAGAAGTTGAAGGGTTTTAATGTTCCTTTCTCCATAAGGACGTATAACTCGGTCTTGAATTCTTGTCCTACCATCATATCAATGTTGAAAGACTTGGATAGCTGTCCGGTTTCTCTTTCTGAACTGCGTACTTTTCTGAATGAGGACGAAGCACTTCTGGTCCATGAATTGACTCAGTCATCAGTTTTAGATGAAGCAATTGAGTGGAACGCGGTAGAGGGTAAGTTGGATTTACATGGTATGCACTTGAGCTCATCGTATTTGATATTGCTGCAATGGATGGATGAGACCAGACTTAGATTTAGCGAAGAAAAGTGTGTAATTCCTGCAGAGATTGTAGTTGTTTCTGGATCTGGAAAGCATAGCAATGTAAGAGGAGAGTCACCGGTGAAAGCGCTGGTTAAAAAGATAATGGTGCGTACTGGAAGCCCGATGAGAATTGACCGGAAGAATGTTGGTAGTTTTATTGCCAAGGGAAAAACTGTTAAAGAATGGCTCTGCAAATGA

Protein Analysis

504

Amino Acids

56.47

Weight (kDa)

9.07

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17033 AT2G17033 AT2G17033 AT2G17033
fragaria_vesca FvH4_2g15760
malus_domestica MD10G1129400.v1.1
prunus_persica Prupe.8G170200_v2.0.a1
pyrus_communis pycom05g12240
rosa_chinensis RchiOBHm_Chr6g0279111
rosa_laevigata RLG00000013167
rosa_multiflora Rmu_co8289613.1_g000001 Rmu_sc0002080.1_g000001 Rmu_sc0014203.1_g000023
rosa_roxburghii Rroxscaffold_7G00189120
rosa_rugosa Rorug06G0122300
rosa_samantha Rh6AG231000 Rh6BG235900 Rh6CG238000 Rh6DG229600
rosa_wichuraiana Rw0G019940 Rw6G020230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 31
AccII CGCG 1 cut(s) 1220
AciI CCGC 7 cut(s) 5, 123, 149, 157, 572, 785, 1220
AclWI GGATC 4 cut(s) 7, 234, 314, 1366
AcsI RAATTY 2 cut(s) 637, 1066
AcuI CTGAAG 2 cut(s) 489, 605
AfaI GTAC 3 cut(s) 903, 1138, 1429
AfeI AGCGCT 1 cut(s) 1404
AfiI CCNNNNNNNGG 2 cut(s) 31, 995
AgeI ACCGGT 2 cut(s) 279, 1393
AgsI TTSAA 6 cut(s) 632, 839, 948, 1018, 1066, 1096
AluBI AGCT 7 cut(s) 92, 193, 314, 734, 974, 1110, 1260
AluI AGCT 7 cut(s) 92, 193, 314, 734, 974, 1110, 1260
Alw21I GWGCWC 2 cut(s) 976, 1262
Alw26I GTCTC 4 cut(s) 306, 574, 594, 1289
AlwI GGATC 4 cut(s) 7, 234, 314, 1366
Aor51HI AGCGCT 1 cut(s) 1404
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 359, 1279
ApoI RAATTY 2 cut(s) 637, 1066
AsiGI ACCGGT 2 cut(s) 279, 1393
Asp700I GAANNNNTTC 1 cut(s) 1161
AspLEI GCGC 1 cut(s) 1405
AspS9I GGNCC 2 cut(s) 769, 1168
AsuC2I CCSGG 1 cut(s) 828
AsuHPI GGTGA 4 cut(s) 329, 357, 1383, 1408
AvaII GGWCC 2 cut(s) 769, 1168
BanII GRGCYC 2 cut(s) 976, 1262
Bbv12I GWGCWC 2 cut(s) 976, 1262
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 346, 1266
BccI CCATC 4 cut(s) 29, 429, 1088, 1282
BceAI ACGGC 1 cut(s) 874
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 828
BcoDI GTCTC 4 cut(s) 306, 574, 594, 1289
BfmI CTRYAG 1 cut(s) 1335
BfoI RGCGCY 1 cut(s) 1406
BglI GCCNNNNNGGC 1 cut(s) 157
BisI GCNGC 5 cut(s) 6, 124, 158, 360, 1280
BlpI GCTNAGC 2 cut(s) 161, 194
BlsI GCNGC 5 cut(s) 7, 125, 159, 361, 1281
Bme1390I CCNGG 1 cut(s) 828
Bme18I GGWCC 2 cut(s) 769, 1168
BmgT120I GGNCC 2 cut(s) 769, 1168
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 828
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 3 cut(s) 683, 772, 970
BmuI ACTGGG 1 cut(s) 190
BoxI GACNNNNGTC 1 cut(s) 586
BpmI CTGGAG 1 cut(s) 288
Bpu10I CCTNAGC 2 cut(s) 153, 310
Bpu1102I GCTNAGC 2 cut(s) 161, 194
BpuEI CTTGAG 2 cut(s) 714, 1276
BpuMI CCSGG 1 cut(s) 828
BsaBI GATNNNNATC 2 cut(s) 489, 709
BsaI GGTCTC 1 cut(s) 1289
BsaJI CCNNGG 4 cut(s) 25, 166, 243, 1479
BsaWI WCCGGW 4 cut(s) 279, 1114, 1393, 1452
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 995
Bse118I RCCGGY 2 cut(s) 279, 1393
Bse1I ACTGG 2 cut(s) 185, 1435
Bse3DI GCAATG 4 cut(s) 501, 983, 1289, 1381
Bse8I GATNNNNATC 2 cut(s) 489, 709
BseDI CCNNGG 4 cut(s) 25, 166, 243, 1479
BseGI GGATG 4 cut(s) 21, 421, 1293, 1297
BseJI GATNNNNATC 2 cut(s) 489, 709
BseLI CCNNNNNNNGG 2 cut(s) 31, 995
BseMI GCAATG 4 cut(s) 501, 983, 1289, 1381
BseMII CTCAG 2 cut(s) 167, 1196
BseNI ACTGG 2 cut(s) 185, 1435
BseRI GAGGAG 4 cut(s) 280, 392, 815, 1398
BseXI GCAGC 2 cut(s) 346, 1266
Bsh1236I CGCG 1 cut(s) 1220
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 1 cut(s) 248
BshTI ACCGGT 2 cut(s) 279, 1393
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 2 cut(s) 976, 1262
BsiSI CCGG 6 cut(s) 249, 280, 827, 1115, 1394, 1453
BslI CCNNNNNNNGG 2 cut(s) 31, 995
BsmAI GTCTC 4 cut(s) 306, 574, 594, 1289
BsmBI CGTCTC 1 cut(s) 306
BsnI GGCC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 1289
Bsp1286I GDGCHC 2 cut(s) 976, 1262
Bsp143I GATC 6 cut(s) 12, 239, 319, 409, 704, 1358
Bsp1720I GCTNAGC 2 cut(s) 161, 194
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 7 cut(s) 5, 123, 149, 157, 572, 785, 1220
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 2 cut(s) 166, 1195
BspFNI CGCG 1 cut(s) 1220
BspHI TCATGA 2 cut(s) 778, 976
BspLI GGNNCC 1 cut(s) 137
BspMAI CTGCAG 1 cut(s) 1339
BspPI GGATC 4 cut(s) 7, 234, 314, 1366
BspTNI GGTCTC 1 cut(s) 1289
BsrDI GCAATG 4 cut(s) 501, 983, 1289, 1381
BsrFI RCCGGY 2 cut(s) 279, 1393
BsrI ACTGG 2 cut(s) 185, 1435
BssAI RCCGGY 2 cut(s) 279, 1393
BssECI CCNNGG 4 cut(s) 25, 166, 243, 1479
BssMI GATC 6 cut(s) 12, 239, 319, 409, 704, 1358
BssT1I CCWWGG 4 cut(s) 25, 166, 243, 1479
Bst4CI ACNGT 3 cut(s) 135, 940, 1492
Bst6I CTCTTC 2 cut(s) 617, 967
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 6 cut(s) 153, 161, 194, 310, 1182, 1304
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 4 cut(s) 21, 421, 1293, 1297
BstFNI CGCG 1 cut(s) 1220
BstH2I RGCGCY 1 cut(s) 1406
BstHHI GCGC 1 cut(s) 1405
BstKTI GATC 6 cut(s) 15, 242, 322, 412, 707, 1361
BstMAI GTCTC 4 cut(s) 306, 574, 594, 1289
BstMBI GATC 6 cut(s) 12, 239, 319, 409, 704, 1358
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 3 cut(s) 120, 157, 980
BstPAI GACNNNNGTC 1 cut(s) 586
BstSCI CCNGG 1 cut(s) 826
BstSFI CTRYAG 1 cut(s) 1335
BstUI CGCG 1 cut(s) 1220
BstV1I GCAGC 2 cut(s) 346, 1266
BstX2I RGATCY 1 cut(s) 1358
BstYI RGATCY 1 cut(s) 1358
BsuRI GGCC 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 4 cut(s) 21, 421, 1293, 1297
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 261, 673
Cac8I GCNNGC 1 cut(s) 128
CciI TCATGA 2 cut(s) 778, 976
CfoI GCGC 1 cut(s) 1405
Cfr10I RCCGGY 2 cut(s) 279, 1393
Cfr13I GGNCC 2 cut(s) 769, 1168
CseI GACGC 1 cut(s) 462
Csp6I GTAC 3 cut(s) 902, 1137, 1428
CspAI ACCGGT 2 cut(s) 279, 1393
CviAII CATG 8 cut(s) 26, 210, 272, 766, 779, 977, 1172, 1244
CviQI GTAC 3 cut(s) 902, 1137, 1428
DdeI CTNAG 6 cut(s) 153, 161, 194, 310, 1182, 1304
DpnI GATC 6 cut(s) 14, 241, 321, 411, 706, 1360
DpnII GATC 6 cut(s) 12, 239, 319, 409, 704, 1358
Eam1104I CTCTTC 2 cut(s) 617, 967
EarI CTCTTC 2 cut(s) 617, 967
EciI GGCGGA 1 cut(s) 138
Ecl136II GAGCTC 2 cut(s) 974, 1260
Eco130I CCWWGG 4 cut(s) 25, 166, 243, 1479
Eco24I GRGCYC 2 cut(s) 976, 1262
Eco31I GGTCTC 1 cut(s) 1289
Eco47I GGWCC 2 cut(s) 769, 1168
Eco47III AGCGCT 1 cut(s) 1404
Eco53kI GAGCTC 2 cut(s) 974, 1260
Eco57I CTGAAG 2 cut(s) 489, 605
EcoICRI GAGCTC 2 cut(s) 974, 1260
EcoRI GAATTC 1 cut(s) 1066
EcoT14I CCWWGG 4 cut(s) 25, 166, 243, 1479
EcoT22I ATGCAT 1 cut(s) 985
EcoT38I GRGCYC 2 cut(s) 976, 1262
ErhI CCWWGG 4 cut(s) 25, 166, 243, 1479
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 8 cut(s) 29, 213, 275, 769, 782, 980, 1175, 1247
FatI CATG 8 cut(s) 25, 209, 271, 765, 778, 976, 1171, 1243
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 5 cut(s) 6, 124, 158, 360, 1280
FokI GGATG 4 cut(s) 8, 408, 1300, 1304
FriOI GRGCYC 2 cut(s) 976, 1262
Fsp4HI GCNGC 5 cut(s) 6, 124, 158, 360, 1280
GlaI GCGC 1 cut(s) 1404
GluI GCNGC 5 cut(s) 6, 124, 158, 360, 1280
GsuI CTGGAG 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 1406
HaeIII GGCC 1 cut(s) 248
HapII CCGG 6 cut(s) 249, 280, 827, 1115, 1394, 1453
HgaI GACGC 1 cut(s) 462
HhaI GCGC 1 cut(s) 1405
Hin1II CATG 8 cut(s) 29, 213, 275, 769, 782, 980, 1175, 1247
Hin6I GCGC 1 cut(s) 1403
HinP1I GCGC 1 cut(s) 1403
HindIII AAGCTT 1 cut(s) 732
HinfI GANTC 6 cut(s) 52, 490, 548, 632, 1180, 1388
HpaII CCGG 6 cut(s) 249, 280, 827, 1115, 1394, 1453
HphI GGTGA 4 cut(s) 329, 357, 1383, 1408
Hpy166II GTNNAC 2 cut(s) 144, 904
Hpy188I TCNGA 7 cut(s) 96, 264, 409, 460, 553, 1129, 1146
Hpy188III TCNNGA 9 cut(s) 16, 81, 579, 753, 779, 977, 1063, 1356, 1362
Hpy8I GTNNAC 2 cut(s) 144, 904
Hpy99I CGWCG 2 cut(s) 135, 478
HpyAV CCTTC 4 cut(s) 75, 445, 914, 1012
HpyCH4III ACNGT 3 cut(s) 135, 940, 1492
HpyCH4IV ACGT 2 cut(s) 77, 1049
HpyCH4V TGCA 6 cut(s) 621, 983, 1252, 1282, 1337, 1509
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 157, 980
HpyF3I CTNAG 6 cut(s) 153, 161, 194, 310, 1182, 1304
HpySE526I ACGT 2 cut(s) 77, 1049
Hsp92II CATG 8 cut(s) 29, 213, 275, 769, 782, 980, 1175, 1247
HspAI GCGC 1 cut(s) 1403
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 6 cut(s) 12, 239, 319, 409, 704, 1358
LmnI GCTCC 3 cut(s) 185, 251, 971
Lsp1109I GCAGC 2 cut(s) 346, 1266
LweI GCATC 3 cut(s) 683, 772, 970
MaeII ACGT 2 cut(s) 77, 1049
MaeIII GTNAC 7 cut(s) 37, 116, 176, 761, 923, 1005, 1389
MalI GATC 6 cut(s) 14, 241, 321, 411, 706, 1360
MboI GATC 6 cut(s) 12, 239, 319, 409, 704, 1358
MboII GAAGA 5 cut(s) 604, 879, 954, 1328, 1468
MfeI CAATTG 1 cut(s) 1206
MflI RGATCY 1 cut(s) 1358
MhlI GDGCHC 2 cut(s) 976, 1262
MluCI AATT 8 cut(s) 462, 622, 637, 1066, 1175, 1206, 1329, 1446
MlyI GAGTC 3 cut(s) 46, 1174, 1397
MmeI TCCRAC 1 cut(s) 1215
Mph1103I ATGCAT 1 cut(s) 985
MroXI GAANNNNTTC 1 cut(s) 1161
MseI TTAA 4 cut(s) 345, 1026, 1410, 1494
MslI CAYNNNNRTG 2 cut(s) 1088, 1374
MspA1I CMGCKG 2 cut(s) 123, 157
MspI CCGG 6 cut(s) 249, 280, 827, 1115, 1394, 1453
MspR9I CCNGG 1 cut(s) 828
MunI CAATTG 1 cut(s) 1206
MvnI CGCG 1 cut(s) 1220
MwoI GCNNNNNNNGC 3 cut(s) 120, 157, 980
NciI CCSGG 1 cut(s) 828
NcoI CCATGG 1 cut(s) 25
NdeII GATC 6 cut(s) 12, 239, 319, 409, 704, 1358
NlaIII CATG 8 cut(s) 29, 213, 275, 769, 782, 980, 1175, 1247
NlaIV GGNNCC 1 cut(s) 137
NmuCI GTSAC 2 cut(s) 923, 1389
NsiI ATGCAT 1 cut(s) 985
PagI TCATGA 2 cut(s) 778, 976
PdmI GAANNNNTTC 1 cut(s) 1161
PfeI GAWTC 3 cut(s) 490, 548, 632
PflFI GACNNNGTC 1 cut(s) 1183
PflMI CCANNNNNTGG 1 cut(s) 31
PinAI ACCGGT 2 cut(s) 279, 1393
PkrI GCNGC 5 cut(s) 7, 125, 159, 361, 1281
PleI GAGTC 3 cut(s) 46, 1174, 1396
PpsI GAGTC 3 cut(s) 46, 1174, 1396
PshAI GACNNNNGTC 1 cut(s) 586
Psp124BI GAGCTC 2 cut(s) 976, 1262
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 2 cut(s) 769, 1168
PstI CTGCAG 1 cut(s) 1339
PsuI RGATCY 1 cut(s) 1358
PsyI GACNNNGTC 1 cut(s) 1183
RsaI GTAC 3 cut(s) 903, 1138, 1429
RsaNI GTAC 3 cut(s) 902, 1137, 1428
RseI CAYNNNNRTG 2 cut(s) 1088, 1374
SacI GAGCTC 2 cut(s) 976, 1262
SaqAI TTAA 4 cut(s) 345, 1026, 1410, 1494
SatI GCNGC 5 cut(s) 6, 124, 158, 360, 1280
Sau3AI GATC 6 cut(s) 12, 239, 319, 409, 704, 1358
Sau96I GGNCC 2 cut(s) 769, 1168
SchI GAGTC 3 cut(s) 46, 1174, 1397
ScrFI CCNGG 1 cut(s) 828
SduI GDGCHC 2 cut(s) 976, 1262
SfaNI GCATC 3 cut(s) 683, 772, 970
SfcI CTRYAG 1 cut(s) 1335
SgrAI CRCCGGYG 1 cut(s) 1393
SinI GGWCC 2 cut(s) 769, 1168
SmiMI CAYNNNNRTG 2 cut(s) 1088, 1374
SmlI CTYRAG 2 cut(s) 729, 1255
SmoI CTYRAG 2 cut(s) 729, 1255
Sse9I AATT 8 cut(s) 462, 622, 637, 1066, 1175, 1206, 1329, 1446
SsiI CCGC 7 cut(s) 5, 123, 149, 157, 572, 785, 1220
SstI GAGCTC 2 cut(s) 976, 1262
StyD4I CCNGG 1 cut(s) 826
StyI CCWWGG 4 cut(s) 25, 166, 243, 1479
TaaI ACNGT 3 cut(s) 135, 940, 1492
TaiI ACGT 2 cut(s) 80, 1052
TaqI TCGA 4 cut(s) 238, 578, 798, 933
TaqII GACCGA 1 cut(s) 1048
TasI AATT 8 cut(s) 462, 622, 637, 1066, 1175, 1206, 1329, 1446
TatI WGTACW 1 cut(s) 901
TauI GCSGC 3 cut(s) 8, 126, 160
TfiI GAWTC 3 cut(s) 490, 548, 632
Tru1I TTAA 4 cut(s) 345, 1026, 1410, 1494
Tru9I TTAA 4 cut(s) 345, 1026, 1410, 1494
TscAI CASTG 2 cut(s) 261, 673
TseFI GTSAC 2 cut(s) 923, 1389
TseI GCWGC 2 cut(s) 359, 1279
Tsp45I GTSAC 2 cut(s) 923, 1389
TspDTI ATGAA 6 cut(s) 281, 561, 609, 905, 1188, 1215
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 2 cut(s) 261, 673
Tth111I GACNNNGTC 1 cut(s) 1183
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 2 cut(s) 769, 1168
XapI RAATTY 2 cut(s) 637, 1066
XcmI CCANNNNNNNNNTGG 2 cut(s) 23, 28
XmnI GAANNNNTTC 1 cut(s) 1161
Zsp2I ATGCAT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.