Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8289613.1

Orthogroup ID

OG0010152

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 523

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8289613.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 431 bp

atgggaagtctcggcagtgcacagctatctttttcagtagcactgccatggcgccatccgcccccacagtcaaaatcctcactcaaaatccaatgcgctctgaccaaacaagggcaacgcttcctgaccaagctcgcagccaatgccggcgacccatccgtcgccaacaaattgatctccaagttcctgtcgagctctcccaagtccactgctctcaccactctctcttatcttctctctcctcacaccacccaccctcacctctcttccctcgccctccccctgtactccaaaatcacagaggcgtcttggtttgagtggaatccaaagttggtagctgccctggttgcgttgcttgataaacaaggactacacagccaatcagaagctttaatctccgagaccgtatcgaaattaggcaccagagaacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

144

Amino Acids

15.55

Weight (kDa)

9.94

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17033 AT2G17033 AT2G17033 AT2G17033
fragaria_vesca	FvH4_2g15760
malus_domestica	MD10G1129400.v1.1
prunus_persica	Prupe.8G170200_v2.0.a1
pyrus_communis	pycom05g12240
rosa_chinensis	RchiOBHm_Chr6g0279111
rosa_laevigata	RLG00000013167
rosa_multiflora	Rmu_co8289613.1_g000001 Rmu_sc0002080.1_g000001 Rmu_sc0014203.1_g000023
rosa_roxburghii	Rroxscaffold_7G00189120
rosa_rugosa	Rorug06G0122300
rosa_samantha	Rh6AG231000 Rh6BG235900 Rh6CG238000 Rh6DG229600
rosa_wichuraiana	Rw0G019940 Rw6G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccB1I	GGYRCC	2 cut(s)	51, 419
AciI	CCGC	1 cut(s)	59
AcyI	GRCGYC	2 cut(s)	52, 305
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	5 cut(s)	25, 133, 195, 338, 389
AluI	AGCT	5 cut(s)	25, 133, 195, 338, 389
Alw21I	GWGCWC	2 cut(s)	22, 197
Alw26I	GTCTC	2 cut(s)	14, 395
Alw44I	GTGCAC	1 cut(s)	18
ApaLI	GTGCAC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	137, 338
AspLEI	GCGC	2 cut(s)	54, 98
AsuHPI	GGTGA	2 cut(s)	208, 251
BaeGI	GKGCMC	1 cut(s)	22
BanI	GGYRCC	2 cut(s)	51, 419
BanII	GRGCYC	1 cut(s)	197
Bbv12I	GWGCWC	2 cut(s)	22, 197
BbvI	GCAGC	2 cut(s)	149, 325
BccI	CCATC	2 cut(s)	63, 163
BciT130I	CCWGG	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	14, 395
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	2 cut(s)	138, 339
BlsI	GCNGC	2 cut(s)	139, 340
Bme1390I	CCNGG	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	53, 421
BmrFI	CCNGG	1 cut(s)	344
BsaHI	GRCGYC	2 cut(s)	52, 305
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	47, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse118I	RCCGGY	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	47, 342
BseGI	GGATG	2 cut(s)	55, 155
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	149, 325
BshNI	GGYRCC	2 cut(s)	51, 419
BsiHKAI	GWGCWC	2 cut(s)	22, 197
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	14, 395
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	22, 197
Bsp143I	GATC	1 cut(s)	174
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	53, 421
BspT107I	GGYRCC	2 cut(s)	51, 419
BspTNI	GGTCTC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	47, 342
BssMI	GATC	1 cut(s)	174
BssNI	GRCGYC	2 cut(s)	52, 305
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	2 cut(s)	69, 406
Bst6I	CTCTTC	1 cut(s)	271
BstACI	GRCGYC	2 cut(s)	52, 305
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	135, 148
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	55, 155
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 98
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	2 cut(s)	14, 395
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 143, 347
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	149, 325
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	55, 155
BtsI	GCAGTG	3 cut(s)	22, 41, 207
BtsIMutI	CAGTG	3 cut(s)	22, 41, 207
Cac8I	GCNNGC	2 cut(s)	135, 148
CfoI	GCGC	2 cut(s)	54, 98
Cfr10I	RCCGGY	1 cut(s)	146
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	7 cut(s)	25, 133, 140, 195, 338, 378, 389
CviKI_1	RGCY	7 cut(s)	25, 133, 140, 195, 338, 378, 389
CviQI	GTAC	1 cut(s)	286
DinI	GGCGCC	1 cut(s)	53
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	395
Eco53kI	GAGCTC	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	197
EgeI	GGCGCC	1 cut(s)	53
EheI	GGCGCC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	51
FaiI	YATR	1 cut(s)	49
FatI	CATG	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	138, 339
FokI	GGATG	2 cut(s)	42, 142
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	138, 339
GlaI	GCGC	2 cut(s)	53, 97
GluI	GCNGC	2 cut(s)	138, 339
HaeII	RGCGCY	1 cut(s)	55
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	2 cut(s)	54, 98
Hin1I	GRCGYC	2 cut(s)	52, 305
Hin1II	CATG	1 cut(s)	51
Hin6I	GCGC	2 cut(s)	52, 96
HinP1I	GCGC	2 cut(s)	52, 96
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	2 cut(s)	208, 251
Hpy166II	GTNNAC	2 cut(s)	20, 207
Hpy188I	TCNGA	3 cut(s)	102, 385, 400
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	2 cut(s)	20, 207
Hpy99I	CGWCG	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	69, 406
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 143, 347
Hsp92I	GRCGYC	2 cut(s)	52, 305
Hsp92II	CATG	1 cut(s)	51
HspAI	GCGC	2 cut(s)	52, 96
KasI	GGCGCC	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	6 cut(s)	137, 160, 200, 296, 329, 356
Lsp1109I	GCAGC	2 cut(s)	149, 325
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	224, 258
MhlI	GDGCHC	2 cut(s)	22, 197
MluCI	AATT	2 cut(s)	170, 413
Mly113I	GGCGCC	1 cut(s)	52
MnlI	CCTC	7 cut(s)	88, 252, 267, 272, 281, 287, 295
MroNI	GCCGGC	1 cut(s)	146
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	46
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	3 cut(s)	58, 143, 347
NaeI	GCCGGC	1 cut(s)	148
NarI	GGCGCC	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	174
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	2 cut(s)	53, 421
PdiI	GCCGGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	139, 340
PluTI	GGCGCC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	53, 421
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	2 cut(s)	138, 339
Sau3AI	GATC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	22, 197
SetI	ASST	6 cut(s)	27, 135, 197, 264, 340, 391
SfoI	GGCGCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	46
Sse9I	AATT	2 cut(s)	170, 413
SsiI	CCGC	1 cut(s)	59
SspDI	GGCGCC	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	69, 406
TaqI	TCGA	2 cut(s)	191, 410
TasI	AATT	2 cut(s)	170, 413
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	3 cut(s)	22, 48, 214
TseI	GCWGC	2 cut(s)	137, 338
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	3 cut(s)	22, 48, 214
VneI	GTGCAC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.