Rw6G020230

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
40500358 .. 40502557
2200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G020230.1

Sequence Viewer

Length: 1254 bp
ATGAAGACGTTGCTGCTCTGTGACGACGGGCACCGACATGCACAGCTATCTTTTTCAGTAGCACTGCCATGGCGCCATCCGCCCCCACAGTCAAAATCCTCACTCCAAATCCAATGCGCTCTGACCAAACAAGGGCAACGCTTCCTGACCAAGCTCGCAGCCAATGCCGGCGACCCATCCGTCGCCAACAAATTGATCTCCAAGTTCCTGTCGAGCTCTCCCAAGTCCACTGCTCTCACCACTCTCTCTTATCTTCTCTCTCCTCACACCACGCACCCTCACCTCTCTTCCCTCGCCCTCCCCTTGTACTACAAAATCACAGAGGCGTCTTGGTTTGAGTGGAATCCAAAGTTGGTAGCTGCCCTGGTTGCGTTGCTAGATAAACAAGGACTACACAGCCAATCAGAAGCTTTAATCTCCGAGACCGTTTCGAAATTAGGCACCAGAGAACGAGAGCTTGCTCAGTTTCATTGCCAATTGGTGGAGTCGCACTCTAAGTTAAGCTCAAAGCGTGGGTTTGATAGGGCCTATACTTACCTCTATCAGCTTCTTCAGAATTCTAGCTCTGTTTATGTAAAACGCAGAGCGTTTGAATCGATGGTTGGTGGTTTATGCGCCATGGATAGGCCTCGTGAAGCGGACGATTTGATTGAGGAGATGAGAGTTAAGGGACTGAAGGCGTCGGTTTTCGAGTTCAGGTCTGTGGTTTATGGCTATGGAAGGTTGGGAATGTTTGAAGAAATGCTGAAGATTGTGGACCAAATGGAGAAGCAGGGGTTTGGTGATGATACTATTTGCTCTAACATGATTCTTTCATCATATGGAGCTCATAATGAGCTGGCTGCGATGGCAATGTGGCTTCGAAAAATGAAAGAATCGAGTGTTCCTTTCTCGATTAGGACTTACAATTCGGTGTTGAATTCGTGCCCTACGATTATGGCAATGCTGCAGGAACCGAAAGCTGTTCCGCCAAGTTTGGATTTGCATGGCATGCATTTGGGTTCAGCTTACTTGGTAATGCTAGAATGGTTTGAGGCAATGCGATACAGGTTTGACTGTGGGGAGTATGTGGTTCCAGCAGAGGTTGTCATTGTTTGCGGATTGGGAAAGCATAGCAGTGTTAGAGGTGAATCCCCGGTTAAAGATCTGGTTAAAGAGATGATGCATCGAAGGGAAAGTCCGATGAGAATTGACAGGAAGAACGTGGGGTGTTTCATTGCCAAGGGAAGAGCTGTGAAGGACTGGTTATGCTAA

Protein Analysis

417

Amino Acids

46.91

Weight (kDa)

9.02

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010152)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccB1I GGYRCC 3 cut(s) 30, 72, 440
AccB7I CCANNNNNTGG 1 cut(s) 481
AciI CCGC 4 cut(s) 80, 638, 968, 1098
AcsI RAATTY 2 cut(s) 556, 919
AcuI CTGAAG 3 cut(s) 536, 695, 767
AcyI GRCGYC 3 cut(s) 73, 326, 680
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 3 cut(s) 132, 481, 624
AgsI TTSAA 3 cut(s) 593, 737, 919
AjnI CCWGG 1 cut(s) 363
AjuI GAANNNNNNNTTGG 4 cut(s) 335, 367, 585, 617
Alw21I GWGCWC 2 cut(s) 218, 829
Alw26I GTCTC 1 cut(s) 416
AoxI GGCC 2 cut(s) 525, 626
ApeKI GCWGC 5 cut(s) 13, 158, 359, 842, 946
ApoI RAATTY 2 cut(s) 556, 919
ArsI GACNNNNNNTTYG 4 cut(s) 892, 924, 1162, 1194
AspLEI GCGC 3 cut(s) 75, 119, 617
AspS9I GGNCC 2 cut(s) 525, 757
AsuC2I CCSGG 1 cut(s) 1136
AsuHPI GGTGA 4 cut(s) 229, 272, 794, 1139
AsuII TTCGAA 2 cut(s) 431, 862
AvaII GGWCC 1 cut(s) 757
BaeGI GKGCMC 2 cut(s) 33, 929
BanI GGYRCC 3 cut(s) 30, 72, 440
BanII GRGCYC 2 cut(s) 218, 829
BauI CACGAG 1 cut(s) 630
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 218, 829
BbvI GCAGC 4 cut(s) 170, 346, 829, 933
BccI CCATC 4 cut(s) 84, 184, 592, 841
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 1 cut(s) 1136
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 3 cut(s) 377, 561, 1022
BfmI CTRYAG 1 cut(s) 947
BfoI RGCGCY 1 cut(s) 76
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 5 cut(s) 14, 159, 360, 843, 947
BlsI GCNGC 5 cut(s) 15, 160, 361, 844, 948
Bme1390I CCNGG 2 cut(s) 365, 1136
Bme18I GGWCC 1 cut(s) 757
BmgT120I GGNCC 2 cut(s) 525, 757
BmiI GGNNCC 5 cut(s) 32, 74, 442, 954, 1074
BmrFI CCNGG 2 cut(s) 365, 1136
BmsI GCATC 2 cut(s) 1152, 1174
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 476, 508
Bpu14I TTCGAA 2 cut(s) 431, 862
BpuMI CCSGG 1 cut(s) 1136
Bsa29I ATCGAT 1 cut(s) 596
BsaHI GRCGYC 3 cut(s) 73, 326, 680
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 5 cut(s) 68, 363, 618, 1134, 1221
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 481, 624
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 1247
Bse3DI GCAATG 5 cut(s) 469, 858, 948, 1044, 1215
BseBI CCWGG 1 cut(s) 365
BseCI ATCGAT 1 cut(s) 596
BseDI CCNNGG 5 cut(s) 68, 363, 618, 1134, 1221
BseGI GGATG 2 cut(s) 76, 176
BseLI CCNNNNNNNGG 3 cut(s) 132, 481, 624
BseMI GCAATG 5 cut(s) 469, 858, 948, 1044, 1215
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 1 cut(s) 1247
BseRI GAGGAG 2 cut(s) 252, 668
BseSI GKGCMC 2 cut(s) 33, 929
BseXI GCAGC 4 cut(s) 170, 346, 829, 933
BshFI GGCC 2 cut(s) 527, 628
BshNI GGYRCC 3 cut(s) 30, 72, 440
BshVI ATCGAT 1 cut(s) 596
BsiHKAI GWGCWC 2 cut(s) 218, 829
BsiSI CCGG 2 cut(s) 168, 1136
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 3 cut(s) 132, 481, 624
BsmAI GTCTC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 684
BsnI GGCC 2 cut(s) 527, 628
Bso31I GGTCTC 1 cut(s) 416
Bsp119I TTCGAA 2 cut(s) 431, 862
Bsp1286I GDGCHC 4 cut(s) 33, 218, 829, 929
Bsp143I GATC 2 cut(s) 195, 1144
Bsp19I CCATGG 2 cut(s) 68, 618
BspACI CCGC 4 cut(s) 80, 638, 968, 1098
BspANI GGCC 2 cut(s) 527, 628
BspCNI CTCAG 1 cut(s) 475
BspDI ATCGAT 1 cut(s) 596
BspLI GGNNCC 5 cut(s) 32, 74, 442, 954, 1074
BspMAI CTGCAG 1 cut(s) 951
BspQI GCTCTTC 1 cut(s) 1222
BspT104I TTCGAA 2 cut(s) 431, 862
BspT107I GGYRCC 3 cut(s) 30, 72, 440
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 5 cut(s) 469, 858, 948, 1044, 1215
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 1 cut(s) 1247
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 5 cut(s) 68, 363, 618, 1134, 1221
BssMI GATC 2 cut(s) 195, 1144
BssNI GRCGYC 3 cut(s) 73, 326, 680
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 3 cut(s) 68, 618, 1221
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 3 cut(s) 90, 427, 1058
Bst6I CTCTTC 2 cut(s) 292, 1222
BstACI GRCGYC 3 cut(s) 73, 326, 680
BstAPI GCANNNNNTGC 2 cut(s) 164, 991
BstBI TTCGAA 2 cut(s) 431, 862
BstC8I GCNNGC 5 cut(s) 156, 169, 459, 840, 992
BstDEI CTNAG 2 cut(s) 462, 495
BstDSI CCRYGG 2 cut(s) 68, 618
BstF5I GGATG 2 cut(s) 76, 176
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 3 cut(s) 75, 119, 617
BstKTI GATC 2 cut(s) 198, 1147
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 2 cut(s) 195, 1144
BstMWI GCNNNNNNNGC 5 cut(s) 79, 164, 368, 848, 991
BstNI CCWGG 1 cut(s) 365
BstNSI RCATGY 2 cut(s) 41, 994
BstSCI CCNGG 2 cut(s) 363, 1134
BstSFI CTRYAG 1 cut(s) 947
BstSLI GKGCMC 2 cut(s) 33, 929
BstV1I GCAGC 4 cut(s) 170, 346, 829, 933
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
Bsu15I ATCGAT 1 cut(s) 596
BsuRI GGCC 2 cut(s) 527, 628
BsuTUI ATCGAT 1 cut(s) 596
BtgI CCRYGG 2 cut(s) 68, 618
BtgZI GCGATG 1 cut(s) 860
BtsCI GGATG 2 cut(s) 76, 176
BtsI GCAGTG 3 cut(s) 62, 228, 1123
BtsIMutI CAGTG 3 cut(s) 62, 228, 1123
Cac8I GCNNGC 5 cut(s) 156, 169, 459, 840, 992
CfoI GCGC 3 cut(s) 75, 119, 617
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 525, 757
ClaI ATCGAT 1 cut(s) 596
CseI GACGC 2 cut(s) 315, 669
Csp6I GTAC 1 cut(s) 307
CviAII CATG 6 cut(s) 38, 69, 619, 805, 986, 991
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 462, 495
DinI GGCGCC 1 cut(s) 74
DpnI GATC 2 cut(s) 197, 1146
DpnII GATC 2 cut(s) 195, 1144
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eam1104I CTCTTC 2 cut(s) 292, 1222
EarI CTCTTC 2 cut(s) 292, 1222
EciI GGCGGA 2 cut(s) 69, 957
Ecl136II GAGCTC 2 cut(s) 216, 827
Eco130I CCWWGG 3 cut(s) 68, 618, 1221
Eco147I AGGCCT 1 cut(s) 628
Eco24I GRGCYC 2 cut(s) 218, 829
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 757
Eco53kI GAGCTC 2 cut(s) 216, 827
Eco57I CTGAAG 3 cut(s) 536, 695, 767
EcoICRI GAGCTC 2 cut(s) 216, 827
EcoO109I RGGNCCY 1 cut(s) 525
EcoRI GAATTC 2 cut(s) 556, 919
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 3 cut(s) 68, 618, 1221
EcoT22I ATGCAT 2 cut(s) 996, 1167
EcoT38I GRGCYC 2 cut(s) 218, 829
EgeI GGCGCC 1 cut(s) 74
EheI GGCGCC 1 cut(s) 74
ErhI CCWWGG 3 cut(s) 68, 618, 1221
FaeI CATG 6 cut(s) 41, 72, 622, 808, 989, 994
FaqI GGGAC 1 cut(s) 684
FatI CATG 6 cut(s) 37, 68, 618, 804, 985, 990
FauNDI CATATG 1 cut(s) 820
Fnu4HI GCNGC 5 cut(s) 14, 159, 360, 843, 947
FokI GGATG 2 cut(s) 63, 163
FriOI GRGCYC 2 cut(s) 218, 829
Fsp4HI GCNGC 5 cut(s) 14, 159, 360, 843, 947
FspBI CTAG 3 cut(s) 377, 561, 1022
GlaI GCGC 3 cut(s) 74, 118, 616
GluI GCNGC 5 cut(s) 14, 159, 360, 843, 947
HaeII RGCGCY 1 cut(s) 76
HaeIII GGCC 2 cut(s) 527, 628
HapII CCGG 2 cut(s) 168, 1136
HgaI GACGC 2 cut(s) 315, 669
HhaI GCGC 3 cut(s) 75, 119, 617
Hin1I GRCGYC 3 cut(s) 73, 326, 680
Hin1II CATG 6 cut(s) 41, 72, 622, 808, 989, 994
Hin6I GCGC 3 cut(s) 73, 117, 615
HinP1I GCGC 3 cut(s) 73, 117, 615
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 6 cut(s) 343, 485, 593, 808, 875, 1130
HpaII CCGG 2 cut(s) 168, 1136
HphI GGTGA 4 cut(s) 229, 272, 794, 1139
Hpy166II GTNNAC 2 cut(s) 228, 757
Hpy188I TCNGA 5 cut(s) 123, 406, 421, 555, 1182
Hpy188III TCNNGA 3 cut(s) 145, 632, 892
Hpy8I GTNNAC 2 cut(s) 228, 757
Hpy99I CGWCG 3 cut(s) 29, 185, 685
HpyAV CCTTC 4 cut(s) 670, 714, 1164, 1231
HpyCH4III ACNGT 3 cut(s) 90, 427, 1058
HpyCH4IV ACGT 2 cut(s) 8, 1203
HpyCH4V TGCA 5 cut(s) 41, 949, 985, 994, 1165
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 164, 368, 848, 991
HpyF3I CTNAG 2 cut(s) 462, 495
HpySE526I ACGT 2 cut(s) 8, 1203
Hsp92I GRCGYC 3 cut(s) 73, 326, 680
Hsp92II CATG 6 cut(s) 41, 72, 622, 808, 989, 994
HspAI GCGC 3 cut(s) 73, 117, 615
KasI GGCGCC 1 cut(s) 72
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 195, 1144
LguI GCTCTTC 1 cut(s) 1222
LmnI GCTCC 1 cut(s) 824
Lsp1109I GCAGC 4 cut(s) 170, 346, 829, 933
LweI GCATC 2 cut(s) 1152, 1174
MaeI CTAG 3 cut(s) 377, 561, 1022
MaeII ACGT 2 cut(s) 8, 1203
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 197, 1146
MboI GATC 2 cut(s) 195, 1144
MboII GAAGA 8 cut(s) 16, 245, 279, 542, 749, 760, 1210, 1239
MfeI CAATTG 1 cut(s) 476
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 4 cut(s) 33, 218, 829, 929
MluCI AATT 7 cut(s) 191, 434, 476, 556, 907, 919, 1188
Mly113I GGCGCC 1 cut(s) 73
MlyI GAGTC 1 cut(s) 494
Mph1103I ATGCAT 2 cut(s) 996, 1167
MroNI GCCGGC 1 cut(s) 167
MseI TTAA 5 cut(s) 413, 500, 666, 1140, 1152
MslI CAYNNNNRTG 3 cut(s) 36, 67, 1116
MspI CCGG 2 cut(s) 168, 1136
MspR9I CCNGG 2 cut(s) 365, 1136
MunI CAATTG 1 cut(s) 476
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 5 cut(s) 79, 164, 368, 848, 991
NaeI GCCGGC 1 cut(s) 169
NarI GGCGCC 1 cut(s) 73
NciI CCSGG 1 cut(s) 1136
NcoI CCATGG 2 cut(s) 68, 618
NdeI CATATG 1 cut(s) 820
NdeII GATC 2 cut(s) 195, 1144
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 6 cut(s) 41, 72, 622, 808, 989, 994
NlaIV GGNNCC 5 cut(s) 32, 74, 442, 954, 1074
NmuCI GTSAC 1 cut(s) 20
NsiI ATGCAT 2 cut(s) 996, 1167
NspI RCATGY 2 cut(s) 41, 994
NspV TTCGAA 2 cut(s) 431, 862
PaeI GCATGC 1 cut(s) 994
PceI AGGCCT 1 cut(s) 628
PciSI GCTCTTC 1 cut(s) 1222
PcsI WCGNNNNNNNCGW 1 cut(s) 929
PdiI GCCGGC 1 cut(s) 169
PfeI GAWTC 5 cut(s) 343, 593, 808, 875, 1130
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 5 cut(s) 15, 160, 361, 844, 948
PleI GAGTC 1 cut(s) 493
PluTI GGCGCC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 493
Psp124BI GAGCTC 2 cut(s) 218, 829
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 5 cut(s) 32, 74, 442, 954, 1074
PspPI GGNCC 2 cut(s) 525, 757
PstI CTGCAG 1 cut(s) 951
PsuI RGATCY 1 cut(s) 1144
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 3 cut(s) 36, 67, 1116
SacI GAGCTC 2 cut(s) 218, 829
SapI GCTCTTC 1 cut(s) 1222
SaqAI TTAA 5 cut(s) 413, 500, 666, 1140, 1152
SatI GCNGC 5 cut(s) 14, 159, 360, 843, 947
Sau3AI GATC 2 cut(s) 195, 1144
Sau96I GGNCC 2 cut(s) 525, 757
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 2 cut(s) 365, 1136
SduI GDGCHC 4 cut(s) 33, 218, 829, 929
SfaNI GCATC 2 cut(s) 1152, 1174
SfcI CTRYAG 1 cut(s) 947
SfoI GGCGCC 1 cut(s) 74
SfuI TTCGAA 2 cut(s) 431, 862
SinI GGWCC 1 cut(s) 757
SmiMI CAYNNNNRTG 3 cut(s) 36, 67, 1116
SphI GCATGC 1 cut(s) 994
Sse9I AATT 7 cut(s) 191, 434, 476, 556, 907, 919, 1188
SseBI AGGCCT 1 cut(s) 628
SsiI CCGC 4 cut(s) 80, 638, 968, 1098
SspDI GGCGCC 1 cut(s) 72
SspMI CTAG 3 cut(s) 377, 561, 1022
SstI GAGCTC 2 cut(s) 218, 829
StuI AGGCCT 1 cut(s) 628
StyD4I CCNGG 2 cut(s) 363, 1134
StyI CCWWGG 3 cut(s) 68, 618, 1221
TaaI ACNGT 3 cut(s) 90, 427, 1058
TaiI ACGT 2 cut(s) 11, 1206
TaqI TCGA 8 cut(s) 212, 431, 596, 690, 862, 878, 893, 1168
TasI AATT 7 cut(s) 191, 434, 476, 556, 907, 919, 1188
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 5 cut(s) 343, 593, 808, 875, 1130
Tru1I TTAA 5 cut(s) 413, 500, 666, 1140, 1152
Tru9I TTAA 5 cut(s) 413, 500, 666, 1140, 1152
TscAI CASTG 3 cut(s) 69, 235, 1123
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 5 cut(s) 13, 158, 359, 842, 946
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 17, 458, 804, 884, 1204
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 3 cut(s) 69, 235, 1123
Van91I CCANNNNNTGG 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 757
XapI RAATTY 2 cut(s) 556, 919
XceI RCATGY 2 cut(s) 41, 994
XspI CTAG 3 cut(s) 377, 561, 1022
Zsp2I ATGCAT 2 cut(s) 996, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.