Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G17033 AT2G17033 AT2G17033 AT2G17033 |
| fragaria_vesca | FvH4_2g15760 |
| malus_domestica | MD10G1129400.v1.1 |
| prunus_persica | Prupe.8G170200_v2.0.a1 |
| pyrus_communis | pycom05g12240 |
| rosa_chinensis | RchiOBHm_Chr6g0279111 |
| rosa_laevigata | RLG00000013167 |
| rosa_multiflora | Rmu_co8289613.1_g000001 Rmu_sc0002080.1_g000001 Rmu_sc0014203.1_g000023 |
| rosa_roxburghii | Rroxscaffold_7G00189120 |
| rosa_rugosa | Rorug06G0122300 |
| rosa_samantha | Rh6AG231000 Rh6BG235900 Rh6CG238000 Rh6DG229600 |
| rosa_wichuraiana | Rw0G019940 Rw6G020230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 380 |
| AclWI | GGATC | 2 cut(s) | 106, 238 |
| AfaI | GTAC | 1 cut(s) | 400 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 253 |
| AgsI | TTSAA | 3 cut(s) | 36, 41, 472 |
| AluBI | AGCT | 2 cut(s) | 304, 330 |
| AluI | AGCT | 2 cut(s) | 304, 330 |
| Alw21I | GWGCWC | 1 cut(s) | 468 |
| Alw26I | GTCTC | 1 cut(s) | 208 |
| AlwI | GGATC | 2 cut(s) | 106, 238 |
| AoxI | GGCC | 1 cut(s) | 141 |
| ApeKI | GCWGC | 3 cut(s) | 304, 386, 389 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 24 |
| AspS9I | GGNCC | 1 cut(s) | 478 |
| AsuHPI | GGTGA | 1 cut(s) | 77 |
| AsuII | TTCGAA | 2 cut(s) | 59, 459 |
| AvaII | GGWCC | 1 cut(s) | 478 |
| Bbv12I | GWGCWC | 1 cut(s) | 468 |
| BbvI | GCAGC | 3 cut(s) | 291, 373, 376 |
| BccI | CCATC | 1 cut(s) | 115 |
| BcoDI | GTCTC | 1 cut(s) | 208 |
| BfaI | CTAG | 1 cut(s) | 495 |
| BisI | GCNGC | 3 cut(s) | 305, 387, 390 |
| BlsI | GCNGC | 3 cut(s) | 306, 388, 391 |
| BmcAI | AGTACT | 1 cut(s) | 400 |
| Bme18I | GGWCC | 1 cut(s) | 478 |
| BmgT120I | GGNCC | 1 cut(s) | 478 |
| BmsI | GCATC | 1 cut(s) | 449 |
| Bpu14I | TTCGAA | 2 cut(s) | 59, 459 |
| BsaJI | CCNNGG | 1 cut(s) | 135 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 131, 161 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 253 |
| Bse118I | RCCGGY | 1 cut(s) | 307 |
| Bse3DI | GCAATG | 1 cut(s) | 216 |
| BseDI | CCNNGG | 1 cut(s) | 135 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 253 |
| BseMI | GCAATG | 1 cut(s) | 216 |
| BseRI | GAGGAG | 1 cut(s) | 128 |
| BseXI | GCAGC | 3 cut(s) | 291, 373, 376 |
| BshFI | GGCC | 1 cut(s) | 143 |
| BsiHKAI | GWGCWC | 1 cut(s) | 468 |
| BsiSI | CCGG | 1 cut(s) | 308 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 253 |
| BsmAI | GTCTC | 1 cut(s) | 208 |
| BsnI | GGCC | 1 cut(s) | 143 |
| Bsp119I | TTCGAA | 2 cut(s) | 59, 459 |
| Bsp1286I | GDGCHC | 1 cut(s) | 468 |
| Bsp143I | GATC | 2 cut(s) | 98, 243 |
| BspANI | GGCC | 1 cut(s) | 143 |
| BspPI | GGATC | 2 cut(s) | 106, 238 |
| BspQI | GCTCTTC | 1 cut(s) | 456 |
| BspT104I | TTCGAA | 2 cut(s) | 59, 459 |
| BsrDI | GCAATG | 1 cut(s) | 216 |
| BsrFI | RCCGGY | 1 cut(s) | 307 |
| BssAI | RCCGGY | 1 cut(s) | 307 |
| BssECI | CCNNGG | 1 cut(s) | 135 |
| BssMI | GATC | 2 cut(s) | 98, 243 |
| BssT1I | CCWWGG | 1 cut(s) | 135 |
| Bst4CI | ACNGT | 3 cut(s) | 106, 230, 290 |
| Bst6I | CTCTTC | 1 cut(s) | 456 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 163 |
| BstBI | TTCGAA | 2 cut(s) | 59, 459 |
| BstKTI | GATC | 2 cut(s) | 101, 246 |
| BstMAI | GTCTC | 1 cut(s) | 208 |
| BstMBI | GATC | 2 cut(s) | 98, 243 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 163 |
| BstV1I | GCAGC | 3 cut(s) | 291, 373, 376 |
| BsuRI | GGCC | 1 cut(s) | 143 |
| BtsIMutI | CAGTG | 1 cut(s) | 295 |
| Cfr10I | RCCGGY | 1 cut(s) | 307 |
| Cfr13I | GGNCC | 1 cut(s) | 478 |
| Csp6I | GTAC | 1 cut(s) | 399 |
| CviAII | CATG | 1 cut(s) | 158 |
| CviJI | RGCY | 3 cut(s) | 143, 304, 330 |
| CviKI_1 | RGCY | 3 cut(s) | 143, 304, 330 |
| CviQI | GTAC | 1 cut(s) | 399 |
| DpnI | GATC | 2 cut(s) | 100, 245 |
| DpnII | GATC | 2 cut(s) | 98, 243 |
| Eam1104I | CTCTTC | 1 cut(s) | 456 |
| EarI | CTCTTC | 1 cut(s) | 456 |
| Eco130I | CCWWGG | 1 cut(s) | 135 |
| Eco47I | GGWCC | 1 cut(s) | 478 |
| EcoT14I | CCWWGG | 1 cut(s) | 135 |
| ErhI | CCWWGG | 1 cut(s) | 135 |
| FaeI | CATG | 1 cut(s) | 161 |
| FaiI | YATR | 5 cut(s) | 77, 159, 285, 347, 380 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 465, 497 |
| FatI | CATG | 1 cut(s) | 157 |
| Fnu4HI | GCNGC | 3 cut(s) | 305, 387, 390 |
| Fsp4HI | GCNGC | 3 cut(s) | 305, 387, 390 |
| FspBI | CTAG | 1 cut(s) | 495 |
| GluI | GCNGC | 3 cut(s) | 305, 387, 390 |
| HaeIII | GGCC | 1 cut(s) | 143 |
| HapII | CCGG | 1 cut(s) | 308 |
| Hin1II | CATG | 1 cut(s) | 161 |
| HinfI | GANTC | 3 cut(s) | 15, 116, 131 |
| HpaII | CCGG | 1 cut(s) | 308 |
| HphI | GGTGA | 1 cut(s) | 77 |
| Hpy166II | GTNNAC | 1 cut(s) | 268 |
| Hpy188III | TCNNGA | 1 cut(s) | 247 |
| Hpy8I | GTNNAC | 1 cut(s) | 268 |
| Hpy99I | CGWCG | 1 cut(s) | 266 |
| HpyAV | CCTTC | 1 cut(s) | 14 |
| HpyCH4III | ACNGT | 3 cut(s) | 106, 230, 290 |
| HpyCH4V | TGCA | 2 cut(s) | 157, 166 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 163 |
| Hsp92II | CATG | 1 cut(s) | 161 |
| Kzo9I | GATC | 2 cut(s) | 98, 243 |
| LguI | GCTCTTC | 1 cut(s) | 456 |
| LmnI | GCTCC | 1 cut(s) | 301 |
| LpnPI | CCDG | 4 cut(s) | 256, 305, 321, 326 |
| Lsp1109I | GCAGC | 3 cut(s) | 291, 373, 376 |
| LweI | GCATC | 1 cut(s) | 449 |
| MaeI | CTAG | 1 cut(s) | 495 |
| MalI | GATC | 2 cut(s) | 100, 245 |
| MboI | GATC | 2 cut(s) | 98, 243 |
| MboII | GAAGA | 3 cut(s) | 53, 446, 473 |
| MfeI | CAATTG | 1 cut(s) | 36 |
| MhlI | GDGCHC | 1 cut(s) | 468 |
| MluCI | AATT | 2 cut(s) | 36, 425 |
| MlyI | GAGTC | 3 cut(s) | 9, 125, 140 |
| MmeI | TCCRAC | 3 cut(s) | 76, 129, 174 |
| MnlI | CCTC | 8 cut(s) | 64, 106, 133, 199, 247, 290, 440, 500 |
| MroXI | GAANNNNTTC | 1 cut(s) | 24 |
| MseI | TTAA | 5 cut(s) | 84, 225, 312, 324, 483 |
| MslI | CAYNNNNRTG | 1 cut(s) | 288 |
| MspI | CCGG | 1 cut(s) | 308 |
| MunI | CAATTG | 1 cut(s) | 36 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 163 |
| NdeII | GATC | 2 cut(s) | 98, 243 |
| NlaIII | CATG | 1 cut(s) | 161 |
| NspV | TTCGAA | 2 cut(s) | 59, 459 |
| PciSI | GCTCTTC | 1 cut(s) | 456 |
| PdmI | GAANNNNTTC | 1 cut(s) | 24 |
| PkrI | GCNGC | 3 cut(s) | 306, 388, 391 |
| PleI | GAGTC | 3 cut(s) | 9, 124, 139 |
| PpsI | GAGTC | 3 cut(s) | 9, 124, 139 |
| PsiI | TTATAA | 1 cut(s) | 380 |
| PspPI | GGNCC | 1 cut(s) | 478 |
| RsaI | GTAC | 1 cut(s) | 400 |
| RsaNI | GTAC | 1 cut(s) | 399 |
| RseI | CAYNNNNRTG | 1 cut(s) | 288 |
| SapI | GCTCTTC | 1 cut(s) | 456 |
| SaqAI | TTAA | 5 cut(s) | 84, 225, 312, 324, 483 |
| SatI | GCNGC | 3 cut(s) | 305, 387, 390 |
| Sau3AI | GATC | 2 cut(s) | 98, 243 |
| Sau96I | GGNCC | 1 cut(s) | 478 |
| ScaI | AGTACT | 1 cut(s) | 400 |
| SchI | GAGTC | 3 cut(s) | 9, 125, 140 |
| SduI | GDGCHC | 1 cut(s) | 468 |
| SetI | ASST | 6 cut(s) | 25, 258, 275, 306, 332, 492 |
| SfaNI | GCATC | 1 cut(s) | 449 |
| SfuI | TTCGAA | 2 cut(s) | 59, 459 |
| SinI | GGWCC | 1 cut(s) | 478 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 288 |
| Sse9I | AATT | 2 cut(s) | 36, 425 |
| SspMI | CTAG | 1 cut(s) | 495 |
| StyI | CCWWGG | 1 cut(s) | 135 |
| TaaI | ACNGT | 3 cut(s) | 106, 230, 290 |
| TaqI | TCGA | 6 cut(s) | 18, 59, 119, 351, 432, 459 |
| TasI | AATT | 2 cut(s) | 36, 425 |
| TatI | WGTACW | 1 cut(s) | 398 |
| Tru1I | TTAA | 5 cut(s) | 84, 225, 312, 324, 483 |
| Tru9I | TTAA | 5 cut(s) | 84, 225, 312, 324, 483 |
| TscAI | CASTG | 1 cut(s) | 295 |
| TseI | GCWGC | 3 cut(s) | 304, 386, 389 |
| TspGWI | ACGGA | 1 cut(s) | 18 |
| TspRI | CASTG | 1 cut(s) | 295 |
| VpaK11BI | GGWCC | 1 cut(s) | 478 |
| XmnI | GAANNNNTTC | 1 cut(s) | 24 |
| XspI | CTAG | 1 cut(s) | 495 |
| ZrmI | AGTACT | 1 cut(s) | 400 |