Rh6AG231000

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
41514470 .. 41515904
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG231000.1

Sequence Viewer

Length: 1344 bp
ATGGGAAGTCTCGGCAGTGCACAGCTATCTTTTTCAGTAGCACTGCCATGGCGCCATCCGCCCCCACAGTCAAAATCCTCACTCCAAATCCAATGCGCTCTGACCAAACAAGGCCAACGCTTTCTGACCAAGCTCGCAGCCAATGCAAGCGACCCATCCGTGGCTAACAAATTGATCTCCAAGTTCCTGTCGAGCTCTCCCAAGTCCACTGCTCTCACCACTCTCTCTTATCTTCTCTCTCCTCACACCACCCACCCTCACCTCTCTTCCCTCGCCCTCCCCTTGTACTCCAAAATCACAGAGGCGTCTTGGTTTGAGTGGAATCCAAAGTTGGTAGCTGCCCTGGTTGCGTTGCTTGATAAACAAGGACTACACAGCCAATCAGAAGCTTTAATCTCCGAGACCGTATCGAAATTAGGCACCAGAGAACGAGAGCTTGCTCAGTTTCATGGCCAATTGGTGGAGTCGCACTCTAAGTTAAGCTCAAAGCGTGGGTTTGATAGGGCCTATACTTACCTCTATCAGCTTCTTCAGAATTCTAGCTCTGTTTATGTAAAACGCCGAGCGTTTGAATCGATGGTCGGTGGTTTATGCGCCATGGATAGGCCTCGTGAAGCGGACGATTTGATTGAGAAGATGAGAGTTAAGGGACTGAAGGCGTCGGTTTTCGAGTTCAGGTCTGTGGTTTATGGCTATGGAAGGTTGGGAATGTTTGAAGAAATGCTGAAGATTGTGGACCAAATGGAGAAGCAGGGGTTTGGTGATGATACTATTTGCTCAAACATGATTCTTTCATCATATGGAGCTCATAATGAGCTGGCTGCGATGGCAATGTGGCTTCGAAAAATGAAAGAATCGAGTGTTCCTTTCTCGATTAGGACTTACAATTCGGTGTTGAATTCGTGCCCTACGATTATGGCAATGCTGCAGGAACCGAAAGCTGTTCCGTGTTCAGTTGAAGAACTGACTGGGATTTTGGATGGTGATGAGGCTTTGGTGGTTAAAGAGTTGGTTGGATCGGCAGTTGTGGATGAGGCGATGATGTGGGATTCTACAGAGGCCAAGTTGGATTTGCATGGCATGCATTTGGGTTCAGCTTACTTGGTAATGCTAGAATGGTTTGAGGCAATGCGATACAGGTTTGACTGTGGGGAGTATGTGGTTCCAGCAGAGGTTGTCATTGTTTGCGGATTGGGAAAGCATAGCAGTGTTAGAGGTGAATCCCCGGTTAAAGATCTGGTTAAAGAGATGATGCGTCGAATGGAAAGTCCGATGAGAATTGATAGGAAGAACGTGGGGTGTTTCATTGCCAAGGGAAGAGCTGTGAAGGACTGGTTATGCTAA

Protein Analysis

447

Amino Acids

49.76

Weight (kDa)

8.44

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010152)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 51, 419
AccB7I CCANNNNNTGG 1 cut(s) 460
AciI CCGC 3 cut(s) 59, 617, 1188
AclWI GGATC 1 cut(s) 1024
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 2 cut(s) 535, 898
AcuI CTGAAG 3 cut(s) 515, 674, 746
AcyI GRCGYC 3 cut(s) 52, 305, 659
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 160, 460, 603
AgsI TTSAA 4 cut(s) 572, 716, 898, 959
AjnI CCWGG 1 cut(s) 342
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
Alw21I GWGCWC 3 cut(s) 22, 197, 808
Alw26I GTCTC 2 cut(s) 14, 395
Alw44I GTGCAC 1 cut(s) 18
AlwI GGATC 1 cut(s) 1024
AoxI GGCC 5 cut(s) 112, 451, 504, 605, 1059
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 137, 338, 821, 925
ApoI RAATTY 2 cut(s) 535, 898
ArsI GACNNNNNNTTYG 6 cut(s) 871, 903, 958, 990, 1252, 1284
AspLEI GCGC 3 cut(s) 54, 98, 596
AspS9I GGNCC 2 cut(s) 504, 736
AsuC2I CCSGG 1 cut(s) 1226
AsuHPI GGTGA 5 cut(s) 208, 251, 773, 995, 1229
AsuII TTCGAA 1 cut(s) 841
AvaII GGWCC 1 cut(s) 736
BaeGI GKGCMC 2 cut(s) 22, 908
BalI TGGCCA 1 cut(s) 453
BanI GGYRCC 2 cut(s) 51, 419
BanII GRGCYC 2 cut(s) 197, 808
BauI CACGAG 1 cut(s) 609
Bbv12I GWGCWC 3 cut(s) 22, 197, 808
BbvI GCAGC 4 cut(s) 149, 325, 808, 912
BccI CCATC 5 cut(s) 63, 163, 571, 820, 974
BciT130I CCWGG 1 cut(s) 344
BcnI CCSGG 1 cut(s) 1226
BcoDI GTCTC 2 cut(s) 14, 395
BfaI CTAG 2 cut(s) 540, 1112
BfmI CTRYAG 2 cut(s) 926, 1053
BfoI RGCGCY 1 cut(s) 55
BglII AGATCT 1 cut(s) 1234
BisI GCNGC 4 cut(s) 138, 339, 822, 926
BlsI GCNGC 4 cut(s) 139, 340, 823, 927
Bme1390I CCNGG 2 cut(s) 344, 1226
Bme18I GGWCC 1 cut(s) 736
BmgT120I GGNCC 2 cut(s) 504, 736
BmiI GGNNCC 4 cut(s) 53, 421, 933, 1164
BmrFI CCNGG 2 cut(s) 344, 1226
BmrI ACTGGG 1 cut(s) 978
BmsI GCATC 1 cut(s) 1242
BmuI ACTGGG 1 cut(s) 978
BplI GAGNNNNNCTC 2 cut(s) 455, 487
Bpu14I TTCGAA 1 cut(s) 841
BpuMI CCSGG 1 cut(s) 1226
Bsa29I ATCGAT 1 cut(s) 575
BsaHI GRCGYC 3 cut(s) 52, 305, 659
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 6 cut(s) 47, 159, 342, 597, 1224, 1311
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 460, 603
Bse1I ACTGG 2 cut(s) 973, 1337
Bse3DI GCAATG 4 cut(s) 837, 927, 1134, 1305
BseBI CCWGG 1 cut(s) 344
BseCI ATCGAT 1 cut(s) 575
BseDI CCNNGG 6 cut(s) 47, 159, 342, 597, 1224, 1311
BseGI GGATG 4 cut(s) 55, 155, 985, 1036
BseLI CCNNNNNNNGG 3 cut(s) 160, 460, 603
BseMI GCAATG 4 cut(s) 837, 927, 1134, 1305
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 2 cut(s) 973, 1337
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 2 cut(s) 22, 908
BseXI GCAGC 4 cut(s) 149, 325, 808, 912
BshFI GGCC 5 cut(s) 114, 453, 506, 607, 1061
BshNI GGYRCC 2 cut(s) 51, 419
BshVI ATCGAT 1 cut(s) 575
BsiHKAI GWGCWC 3 cut(s) 22, 197, 808
BsiSI CCGG 1 cut(s) 1226
BslFI GGGAC 1 cut(s) 663
BslI CCNNNNNNNGG 3 cut(s) 160, 460, 603
BsmAI GTCTC 2 cut(s) 14, 395
BsmFI GGGAC 1 cut(s) 663
BsnI GGCC 5 cut(s) 114, 453, 506, 607, 1061
Bso31I GGTCTC 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 841
Bsp1286I GDGCHC 4 cut(s) 22, 197, 808, 908
Bsp143I GATC 3 cut(s) 174, 1016, 1234
Bsp19I CCATGG 2 cut(s) 47, 597
BspACI CCGC 3 cut(s) 59, 617, 1188
BspANI GGCC 5 cut(s) 114, 453, 506, 607, 1061
BspCNI CTCAG 1 cut(s) 454
BspDI ATCGAT 1 cut(s) 575
BspLI GGNNCC 4 cut(s) 53, 421, 933, 1164
BspMAI CTGCAG 1 cut(s) 930
BspPI GGATC 1 cut(s) 1024
BspQI GCTCTTC 1 cut(s) 1312
BspT104I TTCGAA 1 cut(s) 841
BspT107I GGYRCC 2 cut(s) 51, 419
BspTNI GGTCTC 1 cut(s) 395
BsrDI GCAATG 4 cut(s) 837, 927, 1134, 1305
BsrI ACTGG 2 cut(s) 973, 1337
BssECI CCNNGG 6 cut(s) 47, 159, 342, 597, 1224, 1311
BssMI GATC 3 cut(s) 174, 1016, 1234
BssNI GRCGYC 3 cut(s) 52, 305, 659
BssSI CACGAG 1 cut(s) 609
BssT1I CCWWGG 3 cut(s) 47, 597, 1311
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 3 cut(s) 69, 406, 1148
Bst6I CTCTTC 2 cut(s) 271, 1312
BstACI GRCGYC 3 cut(s) 52, 305, 659
BstAPI GCANNNNNTGC 2 cut(s) 143, 1081
BstBI TTCGAA 1 cut(s) 841
BstC8I GCNNGC 5 cut(s) 135, 148, 438, 819, 1082
BstDEI CTNAG 2 cut(s) 441, 474
BstDSI CCRYGG 3 cut(s) 47, 159, 597
BstF5I GGATG 4 cut(s) 55, 155, 985, 1036
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 3 cut(s) 54, 98, 596
BstKTI GATC 3 cut(s) 177, 1019, 1237
BstMAI GTCTC 2 cut(s) 14, 395
BstMBI GATC 3 cut(s) 174, 1016, 1234
BstMWI GCNNNNNNNGC 5 cut(s) 58, 143, 347, 827, 1081
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 1 cut(s) 1084
BstSCI CCNGG 2 cut(s) 342, 1224
BstSFI CTRYAG 2 cut(s) 926, 1053
BstSLI GKGCMC 2 cut(s) 22, 908
BstV1I GCAGC 4 cut(s) 149, 325, 808, 912
BstX2I RGATCY 1 cut(s) 1234
BstYI RGATCY 1 cut(s) 1234
Bsu15I ATCGAT 1 cut(s) 575
BsuRI GGCC 5 cut(s) 114, 453, 506, 607, 1061
BsuTUI ATCGAT 1 cut(s) 575
BtgI CCRYGG 3 cut(s) 47, 159, 597
BtgZI GCGATG 2 cut(s) 839, 1052
BtsCI GGATG 4 cut(s) 55, 155, 985, 1036
BtsI GCAGTG 4 cut(s) 22, 41, 207, 1213
BtsIMutI CAGTG 4 cut(s) 22, 41, 207, 1213
Cac8I GCNNGC 5 cut(s) 135, 148, 438, 819, 1082
CfoI GCGC 3 cut(s) 54, 98, 596
Cfr13I GGNCC 2 cut(s) 504, 736
ClaI ATCGAT 1 cut(s) 575
CseI GACGC 3 cut(s) 294, 648, 1244
Csp6I GTAC 1 cut(s) 286
CviAII CATG 6 cut(s) 48, 449, 598, 784, 1076, 1081
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 441, 474
DinI GGCGCC 1 cut(s) 53
DpnI GATC 3 cut(s) 176, 1018, 1236
DpnII GATC 3 cut(s) 174, 1016, 1234
EaeI YGGCCR 1 cut(s) 451
Eam1104I CTCTTC 2 cut(s) 271, 1312
EarI CTCTTC 2 cut(s) 271, 1312
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 2 cut(s) 195, 806
Eco130I CCWWGG 3 cut(s) 47, 597, 1311
Eco147I AGGCCT 1 cut(s) 607
Eco24I GRGCYC 2 cut(s) 197, 808
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 736
Eco53kI GAGCTC 2 cut(s) 195, 806
Eco57I CTGAAG 3 cut(s) 515, 674, 746
EcoICRI GAGCTC 2 cut(s) 195, 806
EcoO109I RGGNCCY 1 cut(s) 504
EcoRI GAATTC 2 cut(s) 535, 898
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 3 cut(s) 47, 597, 1311
EcoT22I ATGCAT 1 cut(s) 1086
EcoT38I GRGCYC 2 cut(s) 197, 808
EgeI GGCGCC 1 cut(s) 53
EheI GGCGCC 1 cut(s) 53
ErhI CCWWGG 3 cut(s) 47, 597, 1311
FaeI CATG 6 cut(s) 51, 452, 601, 787, 1079, 1084
FaqI GGGAC 1 cut(s) 663
FatI CATG 6 cut(s) 47, 448, 597, 783, 1075, 1080
FauNDI CATATG 1 cut(s) 799
Fnu4HI GCNGC 4 cut(s) 138, 339, 822, 926
FokI GGATG 4 cut(s) 42, 142, 992, 1043
FriOI GRGCYC 2 cut(s) 197, 808
Fsp4HI GCNGC 4 cut(s) 138, 339, 822, 926
FspBI CTAG 2 cut(s) 540, 1112
GlaI GCGC 3 cut(s) 53, 97, 595
GluI GCNGC 4 cut(s) 138, 339, 822, 926
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 5 cut(s) 114, 453, 506, 607, 1061
HapII CCGG 1 cut(s) 1226
HgaI GACGC 3 cut(s) 294, 648, 1244
HhaI GCGC 3 cut(s) 54, 98, 596
Hin1I GRCGYC 3 cut(s) 52, 305, 659
Hin1II CATG 6 cut(s) 51, 452, 601, 787, 1079, 1084
Hin6I GCGC 3 cut(s) 52, 96, 594
HinP1I GCGC 3 cut(s) 52, 96, 594
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 7 cut(s) 322, 464, 572, 787, 854, 1049, 1220
HpaII CCGG 1 cut(s) 1226
HphI GGTGA 5 cut(s) 208, 251, 773, 995, 1229
Hpy166II GTNNAC 3 cut(s) 20, 207, 736
Hpy188I TCNGA 6 cut(s) 102, 126, 385, 400, 534, 1272
Hpy188III TCNNGA 2 cut(s) 611, 871
Hpy8I GTNNAC 3 cut(s) 20, 207, 736
Hpy99I CGWCG 2 cut(s) 664, 1260
HpyAV CCTTC 3 cut(s) 649, 693, 1321
HpyCH4III ACNGT 3 cut(s) 69, 406, 1148
HpyCH4IV ACGT 1 cut(s) 1293
HpyCH4V TGCA 5 cut(s) 20, 146, 928, 1075, 1084
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 143, 347, 827, 1081
HpyF3I CTNAG 2 cut(s) 441, 474
HpySE526I ACGT 1 cut(s) 1293
Hsp92I GRCGYC 3 cut(s) 52, 305, 659
Hsp92II CATG 6 cut(s) 51, 452, 601, 787, 1079, 1084
HspAI GCGC 3 cut(s) 52, 96, 594
KasI GGCGCC 1 cut(s) 51
Kzo9I GATC 3 cut(s) 174, 1016, 1234
LguI GCTCTTC 1 cut(s) 1312
LmnI GCTCC 1 cut(s) 803
Lsp1109I GCAGC 4 cut(s) 149, 325, 808, 912
LweI GCATC 1 cut(s) 1242
MaeI CTAG 2 cut(s) 540, 1112
MaeII ACGT 1 cut(s) 1293
MalI GATC 3 cut(s) 176, 1018, 1236
MboI GATC 3 cut(s) 174, 1016, 1234
MboII GAAGA 9 cut(s) 224, 258, 521, 646, 728, 739, 971, 1300, 1329
MfeI CAATTG 1 cut(s) 455
MflI RGATCY 1 cut(s) 1234
MhlI GDGCHC 4 cut(s) 22, 197, 808, 908
MlsI TGGCCA 1 cut(s) 453
MluCI AATT 7 cut(s) 170, 413, 455, 535, 886, 898, 1278
MluNI TGGCCA 1 cut(s) 453
Mly113I GGCGCC 1 cut(s) 52
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 2 cut(s) 994, 1047
Mox20I TGGCCA 1 cut(s) 453
Mph1103I ATGCAT 1 cut(s) 1086
MscI TGGCCA 1 cut(s) 453
MseI TTAA 6 cut(s) 392, 479, 645, 1002, 1230, 1242
MslI CAYNNNNRTG 2 cut(s) 46, 1206
Msp20I TGGCCA 1 cut(s) 453
MspI CCGG 1 cut(s) 1226
MspR9I CCNGG 2 cut(s) 344, 1226
MunI CAATTG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 5 cut(s) 58, 143, 347, 827, 1081
NarI GGCGCC 1 cut(s) 52
NciI CCSGG 1 cut(s) 1226
NcoI CCATGG 2 cut(s) 47, 597
NdeI CATATG 1 cut(s) 799
NdeII GATC 3 cut(s) 174, 1016, 1234
NlaIII CATG 6 cut(s) 51, 452, 601, 787, 1079, 1084
NlaIV GGNNCC 4 cut(s) 53, 421, 933, 1164
NmeAIII GCCGAG 1 cut(s) 587
NsiI ATGCAT 1 cut(s) 1086
NspI RCATGY 1 cut(s) 1084
NspV TTCGAA 1 cut(s) 841
PaeI GCATGC 1 cut(s) 1084
PceI AGGCCT 1 cut(s) 607
PciSI GCTCTTC 1 cut(s) 1312
PcsI WCGNNNNNNNCGW 1 cut(s) 908
PfeI GAWTC 6 cut(s) 322, 572, 787, 854, 1049, 1220
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 4 cut(s) 139, 340, 823, 927
PleI GAGTC 1 cut(s) 472
PluTI GGCGCC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 472
Psp124BI GAGCTC 2 cut(s) 197, 808
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 4 cut(s) 53, 421, 933, 1164
PspPI GGNCC 2 cut(s) 504, 736
PstI CTGCAG 1 cut(s) 930
PsuI RGATCY 1 cut(s) 1234
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 2 cut(s) 46, 1206
SacI GAGCTC 2 cut(s) 197, 808
SapI GCTCTTC 1 cut(s) 1312
SaqAI TTAA 6 cut(s) 392, 479, 645, 1002, 1230, 1242
SatI GCNGC 4 cut(s) 138, 339, 822, 926
Sau3AI GATC 3 cut(s) 174, 1016, 1234
Sau96I GGNCC 2 cut(s) 504, 736
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 2 cut(s) 344, 1226
SduI GDGCHC 4 cut(s) 22, 197, 808, 908
SfaNI GCATC 1 cut(s) 1242
SfcI CTRYAG 2 cut(s) 926, 1053
SfoI GGCGCC 1 cut(s) 53
SfuI TTCGAA 1 cut(s) 841
SinI GGWCC 1 cut(s) 736
SmiMI CAYNNNNRTG 2 cut(s) 46, 1206
SphI GCATGC 1 cut(s) 1084
Sse9I AATT 7 cut(s) 170, 413, 455, 535, 886, 898, 1278
SseBI AGGCCT 1 cut(s) 607
SsiI CCGC 3 cut(s) 59, 617, 1188
SspDI GGCGCC 1 cut(s) 51
SspMI CTAG 2 cut(s) 540, 1112
SstI GAGCTC 2 cut(s) 197, 808
StuI AGGCCT 1 cut(s) 607
StyD4I CCNGG 2 cut(s) 342, 1224
StyI CCWWGG 3 cut(s) 47, 597, 1311
TaaI ACNGT 3 cut(s) 69, 406, 1148
TaiI ACGT 1 cut(s) 1296
TaqI TCGA 8 cut(s) 191, 410, 575, 669, 841, 857, 872, 1258
TasI AATT 7 cut(s) 170, 413, 455, 535, 886, 898, 1278
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 6 cut(s) 322, 572, 787, 854, 1049, 1220
Tru1I TTAA 6 cut(s) 392, 479, 645, 1002, 1230, 1242
Tru9I TTAA 6 cut(s) 392, 479, 645, 1002, 1230, 1242
TscAI CASTG 4 cut(s) 22, 48, 214, 1213
TseI GCWGC 4 cut(s) 137, 338, 821, 925
TspDTI ATGAA 4 cut(s) 437, 783, 863, 1294
TspGWI ACGGA 2 cut(s) 148, 936
TspRI CASTG 4 cut(s) 22, 48, 214, 1213
Van91I CCANNNNNTGG 1 cut(s) 460
VneI GTGCAC 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 736
XapI RAATTY 2 cut(s) 535, 898
XceI RCATGY 1 cut(s) 1084
XspI CTAG 2 cut(s) 540, 1112
Zsp2I ATGCAT 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.