Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010152

Physical Location & Seq

Genomic Coordinates Forward (+)

20983125 .. 20986384

Gene Structure 3260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1129400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGCTGAGCCCCAGCCTAATGGCAACATTGGGATGCATTGGCAGCGGACAACTGTCGTTTTCAGTAGCATCGCCGTGGAAACACCACCAACCACGGCCGACGCCGCCATTAGCATCATCTGTCCAATGCGTACTTACCAAACAAGGCCAACGCTTTCTGACCAAGCTCGCAGCCAATGCCAGAGACCCCAAGTTCACAAACAAATTGATTTCCAAATTCCTATCAAGTTCCCCAAAGTCCATTGCTCTCAGCACTCTCTCCTATCTTCTCTCTCCCGACTCCACTCCCCCCCATCTCTCCTCCCTTGCCTTCCCTCTGTACTCAAAAATCACAGAAGAGTCTTGGTTTGAATGGAATCCCAAGTTGGTAGCATCCCTTGTTGCCCTGCTCGACAACCAAGGCCTATACAGCCAATCCGAAGCACTAATCTCCGAAACCATATCCAAATTAGGATCCAGAGAACGGGAGCTTGCTCTTTTTCATTGCCAGTTGCTTGAATCACACTCTAAGCTAAGTTCAAAGCATGGATTTGATAGTACCTACAGTTACCTCCATCAGCTTCTTCATAATTCTTCCTCTGTTTATGTTAAGCGCCGGGCTTTTGAATCAATGGTTGGTGGTTTATGCGCGATGGATCGACCACAGGAAGCAGACATTTTGATTGAGGAAATGATGGTTAAAGGACTCAAACCATCGGTTTTCGAGTTCAGGTCCGTAGTTTATGGGTATGGAAGATTAGGACTTTTTGAAGAAATGCTGAAAGTTGTGGAGAAAATGGAGGGCCAAGGGCTTGCTGTTGATACAATCTGTTCAAATATGGTTCTTTCGTCATATGGAGCTTATAGTGAGCTGGCTGCAATGGTCCTGTGGCTCCGAAAAATGAAAATTTTGAGGCTTCCTTTCTCTATTAGGACTTACAATTCGGTTTTGAATTCATGCCCTACGATCATGGCAATGCTGCAAGATCCGAAGGATGTTCCGTGTTCGATTGAACAACTCAATGGGGTTTTGAATGGTGATGAGGGCTTGGTGGTTAAAGAGTTGGTTGGATCAACGGTTTTGGAGGAGGTGATGGTGTGGGAGTCTTTGGAGGCTAAGTTGGATTTGCATGGTTTGCATTTGGGTTCGGCTTACTTGATAATGTTAGAGTGGTTTGAGGGAATGAGACACAGGTTTAACTGTGGGGAATGTGTGATCCCGGCGGAGGTTGTCATCGTTTGCGGGTTGGGGAAGCATAGCAGTGTTAGAGGGGAGTCGCCGGTTAAAGGTCTGGTTAAGGTGATGATGCATCGGATGGGAAGTCCGATGAGAATCGACAGGAAGAATGTTGGTTGTTTCATTGCCAAGGGGAGAGCTGTGAAGGACTGGCTATGCTCGAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

462

Amino Acids

51.05

Weight (kDa)

8.49

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17033 AT2G17033 AT2G17033 AT2G17033
fragaria_vesca	FvH4_2g15760
malus_domestica	MD10G1129400.v1.1
prunus_persica	Prupe.8G170200_v2.0.a1
pyrus_communis	pycom05g12240
rosa_chinensis	RchiOBHm_Chr6g0279111
rosa_laevigata	RLG00000013167
rosa_multiflora	Rmu_co8289613.1_g000001 Rmu_sc0002080.1_g000001 Rmu_sc0014203.1_g000023
rosa_roxburghii	Rroxscaffold_7G00189120
rosa_rugosa	Rorug06G0122300
rosa_samantha	Rh6AG231000 Rh6BG235900 Rh6CG238000 Rh6DG229600
rosa_wichuraiana	Rw0G019940 Rw6G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	629
AciI	CCGC	4 cut(s)	45, 104, 1202, 1221
AclWI	GGATC	6 cut(s)	447, 460, 642, 959, 1057, 1189
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	3 cut(s)	215, 885, 931
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	3 cut(s)	132, 320, 538
AfiI	CCNNNNNNNGG	3 cut(s)	462, 1204, 1265
AgsI	TTSAA	9 cut(s)	350, 497, 519, 605, 749, 813, 931, 992, 1012
AjuI	GAANNNNNNNTTGG	4 cut(s)	347, 379, 597, 629
AluBI	AGCT	7 cut(s)	166, 469, 511, 559, 839, 850, 1355
AluI	AGCT	7 cut(s)	166, 469, 511, 559, 839, 850, 1355
Alw26I	GTCTC	2 cut(s)	177, 1159
AlwI	GGATC	6 cut(s)	447, 460, 642, 959, 1057, 1189
Ama87I	CYCGRG	1 cut(s)	1375
AoxI	GGCC	4 cut(s)	95, 145, 400, 781
ApeKI	GCWGC	4 cut(s)	42, 170, 854, 958
ApoI	RAATTY	3 cut(s)	215, 885, 931
ArsI	GACNNNNNNTTYG	2 cut(s)	904, 936
AspLEI	GCGC	2 cut(s)	594, 629
AspS9I	GGNCC	3 cut(s)	711, 781, 862
AsuC2I	CCSGG	2 cut(s)	596, 1199
AsuHPI	GGTGA	3 cut(s)	1028, 1081, 1291
AvaI	CYCGRG	1 cut(s)	1375
AvaII	GGWCC	2 cut(s)	711, 862
BamHI	GGATCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	11
BbvI	GCAGC	4 cut(s)	54, 182, 841, 945
BccI	CCATC	7 cut(s)	300, 561, 625, 667, 700, 1066, 1288
BceAI	ACGGC	2 cut(s)	58, 110
BcnI	CCSGG	2 cut(s)	596, 1199
BcoDI	GTCTC	2 cut(s)	177, 1159
BfmI	CTRYAG	1 cut(s)	541
BfoI	RGCGCY	1 cut(s)	595
BisI	GCNGC	5 cut(s)	43, 104, 171, 855, 959
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	5 cut(s)	44, 105, 172, 856, 960
Bme1390I	CCNGG	2 cut(s)	596, 1199
Bme18I	GGWCC	2 cut(s)	711, 862
BmeT110I	CYCGRG	1 cut(s)	1375
BmgT120I	GGNCC	3 cut(s)	711, 781, 862
BmiI	GGNNCC	2 cut(s)	454, 872
BmrFI	CCNGG	2 cut(s)	596, 1199
BmsI	GCATC	6 cut(s)	23, 77, 122, 380, 1275, 1297
BoxI	GACNNNNGTC	1 cut(s)	52
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuMI	CCSGG	2 cut(s)	596, 1199
BsaBI	GATNNNNATC	1 cut(s)	1310
BsaHI	GRCGYC	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	5 cut(s)	74, 92, 397, 784, 1344
BsaXI	ACNNNNNCTCC	2 cut(s)	1082, 1112
Bsc4I	CCNNNNNNNGG	3 cut(s)	462, 1204, 1265
Bse118I	RCCGGY	1 cut(s)	1258
Bse1I	ACTGG	2 cut(s)	487, 1370
Bse3DI	GCAATG	5 cut(s)	240, 481, 864, 960, 1338
Bse8I	GATNNNNATC	1 cut(s)	1310
BseDI	CCNNGG	5 cut(s)	74, 92, 397, 784, 1344
BseGI	GGATG	4 cut(s)	38, 371, 979, 1299
BseJI	GATNNNNATC	1 cut(s)	1310
BseLI	CCNNNNNNNGG	3 cut(s)	462, 1204, 1265
BseMI	GCAATG	5 cut(s)	240, 481, 864, 960, 1338
BseMII	CTCAG	1 cut(s)	262
BseNI	ACTGG	2 cut(s)	487, 1370
BseRI	GAGGAG	2 cut(s)	289, 1079
BseX3I	CGGCCG	1 cut(s)	95
BseXI	GCAGC	4 cut(s)	54, 182, 841, 945
BseYI	CCCAGC	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	629
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	4 cut(s)	97, 147, 402, 783
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	1375
BsiSI	CCGG	3 cut(s)	595, 1199, 1259
BslI	CCNNNNNNNGG	3 cut(s)	462, 1204, 1265
BsmAI	GTCTC	2 cut(s)	177, 1159
BsnI	GGCC	4 cut(s)	97, 147, 402, 783
Bso31I	GGTCTC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	1375
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	6 cut(s)	452, 634, 945, 964, 1049, 1194
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	4 cut(s)	45, 104, 1202, 1221
BspANI	GGCC	4 cut(s)	97, 147, 402, 783
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	629
BspLI	GGNNCC	2 cut(s)	454, 872
BspPI	GGATC	6 cut(s)	447, 460, 642, 959, 1057, 1189
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	5 cut(s)	240, 481, 864, 960, 1338
BsrFI	RCCGGY	1 cut(s)	1258
BsrI	ACTGG	2 cut(s)	487, 1370
BssAI	RCCGGY	1 cut(s)	1258
BssECI	CCNNGG	5 cut(s)	74, 92, 397, 784, 1344
BssMI	GATC	6 cut(s)	452, 634, 945, 964, 1049, 1194
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	3 cut(s)	397, 784, 1344
Bst4CI	ACNGT	4 cut(s)	54, 545, 1057, 1181
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	101
BstAPI	GCANNNNNTGC	2 cut(s)	176, 1114
BstC8I	GCNNGC	4 cut(s)	168, 471, 792, 852
BstDEI	CTNAG	5 cut(s)	5, 248, 507, 512, 1095
BstDSI	CCRYGG	2 cut(s)	74, 92
BstF5I	GGATG	4 cut(s)	38, 371, 979, 1299
BstFNI	CGCG	1 cut(s)	629
BstH2I	RGCGCY	1 cut(s)	595
BstHHI	GCGC	2 cut(s)	594, 629
BstKTI	GATC	6 cut(s)	455, 637, 948, 967, 1052, 1197
BstMAI	GTCTC	2 cut(s)	177, 1159
BstMBI	GATC	6 cut(s)	452, 634, 945, 964, 1049, 1194
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	5 cut(s)	42, 103, 176, 408, 1114
BstPAI	GACNNNNGTC	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	594, 1197
BstSFI	CTRYAG	1 cut(s)	541
BstUI	CGCG	1 cut(s)	629
BstV1I	GCAGC	4 cut(s)	54, 182, 841, 945
BstX2I	RGATCY	2 cut(s)	452, 964
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	2 cut(s)	452, 964
BstZI	CGGCCG	1 cut(s)	95
BsuRI	GGCC	4 cut(s)	97, 147, 402, 783
BtgI	CCRYGG	2 cut(s)	74, 92
BtgZI	GCGATG	2 cut(s)	54, 644
BtsCI	GGATG	4 cut(s)	38, 371, 979, 1299
BtsI	GCAGTG	1 cut(s)	1246
BtsIMutI	CAGTG	1 cut(s)	1246
Cac8I	GCNNGC	4 cut(s)	168, 471, 792, 852
CfoI	GCGC	2 cut(s)	594, 629
Cfr10I	RCCGGY	1 cut(s)	1258
Cfr13I	GGNCC	3 cut(s)	711, 781, 862
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	131, 319, 537
CviAII	CATG	4 cut(s)	524, 936, 949, 1109
CviQI	GTAC	3 cut(s)	131, 319, 537
DdeI	CTNAG	5 cut(s)	5, 248, 507, 512, 1095
DpnI	GATC	6 cut(s)	454, 636, 947, 966, 1051, 1196
DpnII	GATC	6 cut(s)	452, 634, 945, 964, 1049, 1194
EaeI	YGGCCR	1 cut(s)	95
EagI	CGGCCG	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	1217
EclXI	CGGCCG	1 cut(s)	95
Eco130I	CCWWGG	3 cut(s)	397, 784, 1344
Eco147I	AGGCCT	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	711, 862
Eco52I	CGGCCG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	1375
EcoRI	GAATTC	1 cut(s)	931
EcoT14I	CCWWGG	3 cut(s)	397, 784, 1344
EcoT22I	ATGCAT	2 cut(s)	38, 1290
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	3 cut(s)	397, 784, 1344
FaeI	CATG	4 cut(s)	527, 939, 952, 1112
FatI	CATG	4 cut(s)	523, 935, 948, 1108
FauI	CCCGC	1 cut(s)	1214
FauNDI	CATATG	1 cut(s)	832
Fnu4HI	GCNGC	5 cut(s)	43, 104, 171, 855, 959
FokI	GGATG	4 cut(s)	45, 358, 986, 1306
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	5 cut(s)	43, 104, 171, 855, 959
GlaI	GCGC	2 cut(s)	593, 628
GluI	GCNGC	5 cut(s)	43, 104, 171, 855, 959
GsaI	CCCAGC	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	595
HaeIII	GGCC	4 cut(s)	97, 147, 402, 783
HapII	CCGG	3 cut(s)	595, 1199, 1259
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	2 cut(s)	594, 629
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	4 cut(s)	527, 939, 952, 1112
Hin6I	GCGC	2 cut(s)	592, 627
HinP1I	GCGC	2 cut(s)	592, 627
HinfI	GANTC	9 cut(s)	278, 338, 355, 497, 605, 684, 1082, 1253, 1311
HpaII	CCGG	3 cut(s)	595, 1199, 1259
HphI	GGTGA	3 cut(s)	1028, 1081, 1291
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	7 cut(s)	159, 418, 433, 875, 969, 1293, 1305
Hpy188III	TCNNGA	2 cut(s)	275, 456
Hpy8I	GTNNAC	1 cut(s)	195
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	3 cut(s)	319, 964, 1354
HpyCH4III	ACNGT	4 cut(s)	54, 545, 1057, 1181
HpyCH4V	TGCA	6 cut(s)	36, 857, 961, 1108, 1117, 1288
HpyF10VI	GCNNNNNNNGC	5 cut(s)	42, 103, 176, 408, 1114
HpyF3I	CTNAG	5 cut(s)	5, 248, 507, 512, 1095
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	4 cut(s)	527, 939, 952, 1112
HspAI	GCGC	2 cut(s)	592, 627
Kzo9I	GATC	6 cut(s)	452, 634, 945, 964, 1049, 1194
LmnI	GCTCC	3 cut(s)	466, 836, 876
Lsp1109I	GCAGC	4 cut(s)	54, 182, 841, 945
LweI	GCATC	6 cut(s)	23, 77, 122, 380, 1275, 1297
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	6 cut(s)	454, 636, 947, 966, 1051, 1196
MboI	GATC	6 cut(s)	452, 634, 945, 964, 1049, 1194
MboII	GAAGA	7 cut(s)	257, 347, 554, 564, 744, 761, 1333
MflI	RGATCY	2 cut(s)	452, 964
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	7 cut(s)	203, 215, 446, 568, 885, 919, 931
MlyI	GAGTC	5 cut(s)	272, 347, 678, 1091, 1262
MmeI	TCCRAC	2 cut(s)	1027, 1080
Mph1103I	ATGCAT	2 cut(s)	38, 1290
MseI	TTAA	6 cut(s)	588, 678, 1035, 1176, 1263, 1275
MslI	CAYNNNNRTG	4 cut(s)	31, 73, 953, 1239
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	3 cut(s)	595, 1199, 1259
MspR9I	CCNGG	2 cut(s)	596, 1199
MvnI	CGCG	1 cut(s)	629
MwoI	GCNNNNNNNGC	5 cut(s)	42, 103, 176, 408, 1114
NciI	CCSGG	2 cut(s)	596, 1199
NdeI	CATATG	1 cut(s)	832
NdeII	GATC	6 cut(s)	452, 634, 945, 964, 1049, 1194
NlaIII	CATG	4 cut(s)	527, 939, 952, 1112
NlaIV	GGNNCC	2 cut(s)	454, 872
NsiI	ATGCAT	2 cut(s)	38, 1290
PaeR7I	CTCGAG	1 cut(s)	1375
PceI	AGGCCT	1 cut(s)	402
PfeI	GAWTC	4 cut(s)	355, 497, 605, 1311
PkrI	GCNGC	5 cut(s)	44, 105, 172, 856, 960
PleI	GAGTC	5 cut(s)	272, 346, 678, 1090, 1261
PpsI	GAGTC	5 cut(s)	272, 346, 678, 1090, 1261
PshAI	GACNNNNGTC	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	454, 872
PspPI	GGNCC	3 cut(s)	711, 781, 862
PspXI	VCTCGAGB	1 cut(s)	1375
PsuI	RGATCY	2 cut(s)	452, 964
RsaI	GTAC	3 cut(s)	132, 320, 538
RsaNI	GTAC	3 cut(s)	131, 319, 537
RseI	CAYNNNNRTG	4 cut(s)	31, 73, 953, 1239
SaqAI	TTAA	6 cut(s)	588, 678, 1035, 1176, 1263, 1275
SatI	GCNGC	5 cut(s)	43, 104, 171, 855, 959
Sau3AI	GATC	6 cut(s)	452, 634, 945, 964, 1049, 1194
Sau96I	GGNCC	3 cut(s)	711, 781, 862
SchI	GAGTC	5 cut(s)	272, 347, 678, 1091, 1262
ScrFI	CCNGG	2 cut(s)	596, 1199
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	6 cut(s)	23, 77, 122, 380, 1275, 1297
SfcI	CTRYAG	1 cut(s)	541
Sfr274I	CTCGAG	1 cut(s)	1375
SinI	GGWCC	2 cut(s)	711, 862
SlaI	CTCGAG	1 cut(s)	1375
SmiMI	CAYNNNNRTG	4 cut(s)	31, 73, 953, 1239
SmlI	CTYRAG	1 cut(s)	1375
SmoI	CTYRAG	1 cut(s)	1375
Sse9I	AATT	7 cut(s)	203, 215, 446, 568, 885, 919, 931
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	4 cut(s)	45, 104, 1202, 1221
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	594, 1197
StyI	CCWWGG	3 cut(s)	397, 784, 1344
TaaI	ACNGT	4 cut(s)	54, 545, 1057, 1181
TaqI	TCGA	6 cut(s)	390, 637, 702, 986, 1314, 1376
TasI	AATT	7 cut(s)	203, 215, 446, 568, 885, 919, 931
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	4 cut(s)	355, 497, 605, 1311
Tru1I	TTAA	6 cut(s)	588, 678, 1035, 1176, 1263, 1275
Tru9I	TTAA	6 cut(s)	588, 678, 1035, 1176, 1263, 1275
TscAI	CASTG	1 cut(s)	1246
TseI	GCWGC	4 cut(s)	42, 170, 854, 958
TspDTI	ATGAA	5 cut(s)	470, 554, 896, 924, 1327
TspGWI	ACGGA	2 cut(s)	703, 969
TspRI	CASTG	1 cut(s)	1246
VpaK11BI	GGWCC	2 cut(s)	711, 862
XapI	RAATTY	3 cut(s)	215, 885, 931
XhoI	CTCGAG	1 cut(s)	1375
Zsp2I	ATGCAT	2 cut(s)	38, 1290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.