Rmu_sc0002080.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002080.1
OG0010152
Physical Location & Seq
Reverse (-)
2 .. 739
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002080.1_g000001.1.cds

Sequence Viewer

Length: 647 bp
atgggaagtctcggcagtgcacggctatctttttcagtagcactgccatggcgccatccgcccccacagtcaaaatcctcactccaaatccaatgcgctctgaccaaacaaggccaacgctttctgaccaagctcgcagccaatgcaagcgacccatccgtggctaacaaattgatctccaagttcctgtcgagctctcctaagtccactgctctcaccactctctcttatcttctctctcctcacaccacccaccctcacctctcttccctcgccctccctttgtactacaaaatcacagaggcgtcttggtttgagtggaatccaaagttggtagctgccctggttgctttgcttgataaacaaggactacacagccaatcagaagctttaatctccgagaccgtatcgaaattaggcaccagagaacgagagcttgctcagtttcatggccaattggtggagtcgcactctaagttaagctcaaagcgtgggtttgatagggcctatacttacctctatcagcttcttcagaattctagctctgtttatgtaaaacgccgagcgtttgaatcgatggttggtggtttatgcgccatggataggcctcgtgaagcggacgatttgattgaggagatgagagttaa

Protein Analysis

215

Amino Acids

23.88

Weight (kDa)

9.57

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17033 AT2G17033 AT2G17033 AT2G17033
fragaria_vesca FvH4_2g15760
malus_domestica MD10G1129400.v1.1
prunus_persica Prupe.8G170200_v2.0.a1
pyrus_communis pycom05g12240
rosa_chinensis RchiOBHm_Chr6g0279111
rosa_laevigata RLG00000013167
rosa_multiflora Rmu_co8289613.1_g000001 Rmu_sc0002080.1_g000001 Rmu_sc0014203.1_g000023
rosa_roxburghii Rroxscaffold_7G00189120
rosa_rugosa Rorug06G0122300
rosa_samantha Rh6AG231000 Rh6BG235900 Rh6CG238000 Rh6DG229600
rosa_wichuraiana Rw0G019940 Rw6G020230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 51, 419
AccB7I CCANNNNNTGG 1 cut(s) 460
AciI CCGC 2 cut(s) 59, 617
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 515
AcyI GRCGYC 2 cut(s) 52, 305
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 160, 460, 603
AgsI TTSAA 1 cut(s) 572
AjnI CCWGG 1 cut(s) 342
AjuI GAANNNNNNNTTGG 4 cut(s) 314, 346, 564, 596
AluBI AGCT 8 cut(s) 133, 195, 338, 389, 436, 483, 526, 543
AluI AGCT 8 cut(s) 133, 195, 338, 389, 436, 483, 526, 543
Alw21I GWGCWC 2 cut(s) 22, 197
Alw26I GTCTC 2 cut(s) 14, 395
Alw44I GTGCAC 1 cut(s) 18
AoxI GGCC 4 cut(s) 112, 451, 504, 605
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 137, 338
ApoI RAATTY 1 cut(s) 535
AspLEI GCGC 3 cut(s) 54, 98, 596
AspS9I GGNCC 1 cut(s) 504
AsuHPI GGTGA 2 cut(s) 208, 251
BaeGI GKGCMC 1 cut(s) 22
BalI TGGCCA 1 cut(s) 453
BanI GGYRCC 2 cut(s) 51, 419
BanII GRGCYC 1 cut(s) 197
BauI CACGAG 1 cut(s) 609
Bbv12I GWGCWC 2 cut(s) 22, 197
BbvI GCAGC 2 cut(s) 149, 325
BccI CCATC 3 cut(s) 63, 163, 571
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 344
BcoDI GTCTC 2 cut(s) 14, 395
BfaI CTAG 1 cut(s) 540
BfoI RGCGCY 1 cut(s) 55
BisI GCNGC 2 cut(s) 138, 339
BlsI GCNGC 2 cut(s) 139, 340
Bme1390I CCNGG 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 504
BmiI GGNNCC 2 cut(s) 53, 421
BmrFI CCNGG 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 455, 487
Bsa29I ATCGAT 1 cut(s) 575
BsaHI GRCGYC 2 cut(s) 52, 305
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 4 cut(s) 47, 159, 342, 597
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 460, 603
BseBI CCWGG 1 cut(s) 344
BseCI ATCGAT 1 cut(s) 575
BseDI CCNNGG 4 cut(s) 47, 159, 342, 597
BseGI GGATG 2 cut(s) 55, 155
BseLI CCNNNNNNNGG 3 cut(s) 160, 460, 603
BseMII CTCAG 1 cut(s) 455
BseRI GAGGAG 2 cut(s) 231, 647
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 2 cut(s) 149, 325
BshFI GGCC 4 cut(s) 114, 453, 506, 607
BshNI GGYRCC 2 cut(s) 51, 419
BshVI ATCGAT 1 cut(s) 575
BsiHKAI GWGCWC 2 cut(s) 22, 197
BslI CCNNNNNNNGG 3 cut(s) 160, 460, 603
BsmAI GTCTC 2 cut(s) 14, 395
BsnI GGCC 4 cut(s) 114, 453, 506, 607
Bso31I GGTCTC 1 cut(s) 395
Bsp1286I GDGCHC 2 cut(s) 22, 197
Bsp143I GATC 1 cut(s) 174
Bsp19I CCATGG 2 cut(s) 47, 597
BspACI CCGC 2 cut(s) 59, 617
BspANI GGCC 4 cut(s) 114, 453, 506, 607
BspCNI CTCAG 1 cut(s) 454
BspDI ATCGAT 1 cut(s) 575
BspLI GGNNCC 2 cut(s) 53, 421
BspT107I GGYRCC 2 cut(s) 51, 419
BspTNI GGTCTC 1 cut(s) 395
BssECI CCNNGG 4 cut(s) 47, 159, 342, 597
BssMI GATC 1 cut(s) 174
BssNI GRCGYC 2 cut(s) 52, 305
BssSI CACGAG 1 cut(s) 609
BssT1I CCWWGG 2 cut(s) 47, 597
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 2 cut(s) 69, 406
Bst6I CTCTTC 1 cut(s) 271
BstACI GRCGYC 2 cut(s) 52, 305
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 3 cut(s) 135, 148, 438
BstDEI CTNAG 3 cut(s) 201, 441, 474
BstDSI CCRYGG 3 cut(s) 47, 159, 597
BstF5I GGATG 2 cut(s) 55, 155
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 3 cut(s) 54, 98, 596
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 2 cut(s) 14, 395
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 3 cut(s) 58, 143, 347
BstNI CCWGG 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 342
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 149, 325
Bsu15I ATCGAT 1 cut(s) 575
BsuRI GGCC 4 cut(s) 114, 453, 506, 607
BsuTUI ATCGAT 1 cut(s) 575
BtgI CCRYGG 3 cut(s) 47, 159, 597
BtsCI GGATG 2 cut(s) 55, 155
BtsI GCAGTG 3 cut(s) 22, 41, 207
BtsIMutI CAGTG 3 cut(s) 22, 41, 207
Cac8I GCNNGC 3 cut(s) 135, 148, 438
CfoI GCGC 3 cut(s) 54, 98, 596
Cfr13I GGNCC 1 cut(s) 504
ClaI ATCGAT 1 cut(s) 575
CseI GACGC 1 cut(s) 294
Csp6I GTAC 1 cut(s) 286
CviAII CATG 3 cut(s) 48, 449, 598
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 3 cut(s) 201, 441, 474
DinI GGCGCC 1 cut(s) 53
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 47, 597
Eco147I AGGCCT 1 cut(s) 607
Eco24I GRGCYC 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 395
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 504
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 2 cut(s) 47, 597
EcoT38I GRGCYC 1 cut(s) 197
EgeI GGCGCC 1 cut(s) 53
EheI GGCGCC 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 47, 597
FaeI CATG 3 cut(s) 51, 452, 601
FaiI YATR 6 cut(s) 49, 450, 510, 552, 592, 599
FatI CATG 3 cut(s) 47, 448, 597
Fnu4HI GCNGC 2 cut(s) 138, 339
FokI GGATG 2 cut(s) 42, 142
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 138, 339
FspBI CTAG 1 cut(s) 540
GlaI GCGC 3 cut(s) 53, 97, 595
GluI GCNGC 2 cut(s) 138, 339
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 4 cut(s) 114, 453, 506, 607
HgaI GACGC 1 cut(s) 294
HhaI GCGC 3 cut(s) 54, 98, 596
Hin1I GRCGYC 2 cut(s) 52, 305
Hin1II CATG 3 cut(s) 51, 452, 601
Hin6I GCGC 3 cut(s) 52, 96, 594
HinP1I GCGC 3 cut(s) 52, 96, 594
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 3 cut(s) 322, 464, 572
HphI GGTGA 2 cut(s) 208, 251
Hpy166II GTNNAC 2 cut(s) 20, 207
Hpy188I TCNGA 5 cut(s) 102, 126, 385, 400, 534
Hpy188III TCNNGA 1 cut(s) 611
Hpy8I GTNNAC 2 cut(s) 20, 207
HpyCH4III ACNGT 2 cut(s) 69, 406
HpyCH4V TGCA 2 cut(s) 20, 146
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 143, 347
HpyF3I CTNAG 3 cut(s) 201, 441, 474
Hsp92I GRCGYC 2 cut(s) 52, 305
Hsp92II CATG 3 cut(s) 51, 452, 601
HspAI GCGC 3 cut(s) 52, 96, 594
KasI GGCGCC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 174
LpnPI CCDG 4 cut(s) 200, 329, 356, 436
Lsp1109I GCAGC 2 cut(s) 149, 325
MaeI CTAG 1 cut(s) 540
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 3 cut(s) 224, 258, 521
MfeI CAATTG 1 cut(s) 455
MhlI GDGCHC 2 cut(s) 22, 197
MlsI TGGCCA 1 cut(s) 453
MluCI AATT 4 cut(s) 170, 413, 455, 535
MluNI TGGCCA 1 cut(s) 453
Mly113I GGCGCC 1 cut(s) 52
MlyI GAGTC 1 cut(s) 473
Mox20I TGGCCA 1 cut(s) 453
MscI TGGCCA 1 cut(s) 453
MseI TTAA 3 cut(s) 392, 479, 645
MslI CAYNNNNRTG 1 cut(s) 46
Msp20I TGGCCA 1 cut(s) 453
MspR9I CCNGG 1 cut(s) 344
MunI CAATTG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 3 cut(s) 58, 143, 347
NarI GGCGCC 1 cut(s) 52
NcoI CCATGG 2 cut(s) 47, 597
NdeII GATC 1 cut(s) 174
NlaIII CATG 3 cut(s) 51, 452, 601
NlaIV GGNNCC 2 cut(s) 53, 421
NmeAIII GCCGAG 1 cut(s) 587
PceI AGGCCT 1 cut(s) 607
PfeI GAWTC 2 cut(s) 322, 572
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 2 cut(s) 139, 340
PleI GAGTC 1 cut(s) 472
PluTI GGCGCC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 472
Psp124BI GAGCTC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 2 cut(s) 53, 421
PspPI GGNCC 1 cut(s) 504
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 46
SacI GAGCTC 1 cut(s) 197
SaqAI TTAA 3 cut(s) 392, 479, 645
SatI GCNGC 2 cut(s) 138, 339
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 504
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 2 cut(s) 22, 197
SfoI GGCGCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 46
Sse9I AATT 4 cut(s) 170, 413, 455, 535
SseBI AGGCCT 1 cut(s) 607
SsiI CCGC 2 cut(s) 59, 617
SspDI GGCGCC 1 cut(s) 51
SspMI CTAG 1 cut(s) 540
SstI GAGCTC 1 cut(s) 197
StuI AGGCCT 1 cut(s) 607
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 2 cut(s) 47, 597
TaaI ACNGT 2 cut(s) 69, 406
TaqI TCGA 3 cut(s) 191, 410, 575
TasI AATT 4 cut(s) 170, 413, 455, 535
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 2 cut(s) 322, 572
Tru1I TTAA 3 cut(s) 392, 479, 645
Tru9I TTAA 3 cut(s) 392, 479, 645
TscAI CASTG 3 cut(s) 22, 48, 214
TseI GCWGC 2 cut(s) 137, 338
TspDTI ATGAA 1 cut(s) 437
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 3 cut(s) 22, 48, 214
Van91I CCANNNNNTGG 1 cut(s) 460
VneI GTGCAC 1 cut(s) 18
XapI RAATTY 1 cut(s) 535
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.