Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010152

Physical Location & Seq

Genomic Coordinates Forward (+)

17467454 .. 17469356

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G170200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGTTAAGCCCAATCACATCATATGCCCAAATGATGCTCAGCCTCAACCAAATGGGAGGCATTGGCAGCGGACAACTATCTTTCTCAATAGCATTACCATGGAACCCTCTACGACCTCTGCCTCCATTAACATCACCAATCCAATGCGCAGTGACCAAACAAGGCCAACGCTTTCTCACCAAGCTTGCAGCCAATGCCAGGGACGCCAAGGTCACAAACAAGTTGATTGCCAAATTCCTCACTTCTTCTACCAAGTCCATTGCTCTCAACACTCTCTCCTATCTTCTCTCCCCTGATACCACTCTCCCCCATCTCTCTTCCCTCGCCCTCCCTTTCTACTCAAAAATCACAGAAGCGTCTTGGTTTGAATGGAATCCCAAGTTGGTAGCAGCCCTTGTTGCCCTGCTCGACAAACAAGGCCAGCACAACGAAGCAGAAGTTCTAATCTCTGAAACCATTTCCAAATTAGGCTCTAGGGAACGAGAGCTTGCTCTTTTTCATTGTCAGTTGGTTGAATCACACTCTAAGCTAAGTTCAAAGCATGGATTTGATAGTTCCTACAGTTACCTCTATCAGCTTCTTCATAATTCTTCCTCTGTTTATGTCAAAAACCGAGCTTTTGAATCAATGGTTAGTGGTTTATGTGAAATGGATCGACCTCGTGAAGCAGACAATTTGATTGAGGAGATGAGAGTTAGAGGACTCAAACCATCGGTTTTCGAGTTTAGGTCTGTGGTTTATGGATATGGAAGATTGGGACTGTTTGAAGATATGCTGAAAGTTGTGGAACAAATGGAGAACCAAGGGATTGCTATTGATACAATTTGTTCCAATATGGTTCTTTCATCGTATGGAGCTCATAGTGAGCTTGCTGCAATGCTTGTGTGGCTCCGAAAAATGAAAAGTTTGAGTCTTCCTTTCTCTATTAGGACTTACAATTCGGTCTTGAATTCATGCCTTACGATCATGGCAATGCTGCAAGAACCGAAAGATTTTCCATGTTCGATTGAAGAATTGAATGGAGTTTTGAATGGTGATGAGGCTTTGTTGGTTAAAGAGTTAGTTGAATCAACAGTTTTGGATGAGGTGATGGTGTGGGAACCTTTGGAGGCCAAGTTGGATTTGCATGGCATGCATTTAGGTTCAGCTTATTTGATTTTGTTGGAGTGGTTTGAGGCAATGCGATGCAGGTTCAACAGTGGGAAGGATGTGATCCCGGCAGAGGTTGTCGTCATCTGCGGGTCAGGAAAGCATAGCAGTGTTAGAGGGGAATCCCCAGTTAAAGGACTGGTTAAACAGATGATGCTTCGGATGGAAAGTCCGATGAGAATTGATCGGAAGAATGTTGGTTGTTTTGTTGCCAAGGGGAGAGCTGTGAAGGACTGGTTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

465

Amino Acids

51.73

Weight (kDa)

7.56

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17033 AT2G17033 AT2G17033 AT2G17033
fragaria_vesca	FvH4_2g15760
malus_domestica	MD10G1129400.v1.1
prunus_persica	Prupe.8G170200_v2.0.a1
pyrus_communis	pycom05g12240
rosa_chinensis	RchiOBHm_Chr6g0279111
rosa_laevigata	RLG00000013167
rosa_multiflora	Rmu_co8289613.1_g000001 Rmu_sc0002080.1_g000001 Rmu_sc0014203.1_g000023
rosa_roxburghii	Rroxscaffold_7G00189120
rosa_rugosa	Rorug06G0122300
rosa_samantha	Rh6AG231000 Rh6BG235900 Rh6CG238000 Rh6DG229600
rosa_wichuraiana	Rw0G019940 Rw6G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc16I	TGCGCA	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	1179
AciI	CCGC	2 cut(s)	69, 1239
AclWI	GGATC	2 cut(s)	660, 1207
AcsI	RAATTY	2 cut(s)	233, 949
AcyI	GRCGYC	1 cut(s)	204
AfiI	CCNNNNNNNGG	3 cut(s)	198, 1222, 1283
AjnI	CCWGG	1 cut(s)	197
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	9 cut(s)	184, 487, 529, 577, 617, 857, 868, 1148, 1373
AluI	AGCT	9 cut(s)	184, 487, 529, 577, 617, 857, 868, 1148, 1373
Alw21I	GWGCWC	1 cut(s)	859
AlwI	GGATC	2 cut(s)	660, 1207
AoxI	GGCC	3 cut(s)	163, 418, 1110
ApeKI	GCWGC	5 cut(s)	66, 188, 389, 872, 976
ApoI	RAATTY	2 cut(s)	233, 949
ArsI	GACNNNNNNTTYG	2 cut(s)	922, 954
AspLEI	GCGC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	1217
AsuHPI	GGTGA	4 cut(s)	126, 169, 1046, 1099
BanII	GRGCYC	1 cut(s)	859
BauI	CACGAG	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	905
Bbv12I	GWGCWC	1 cut(s)	859
BbvI	GCAGC	5 cut(s)	78, 200, 401, 859, 963
BccI	CCATC	4 cut(s)	318, 718, 1084, 1306
BciT130I	CCWGG	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	1217
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	1 cut(s)	559
BfuAI	ACCTGC	1 cut(s)	1179
BisI	GCNGC	5 cut(s)	67, 189, 390, 873, 977
BlpI	GCTNAGC	1 cut(s)	38
BlsI	GCNGC	5 cut(s)	68, 190, 391, 874, 978
Bme1390I	CCNGG	2 cut(s)	199, 1217
BmiI	GGNNCC	3 cut(s)	104, 890, 1101
BmrFI	CCNGG	2 cut(s)	199, 1217
BmrI	ACTGGG	1 cut(s)	1271
BmsI	GCATC	3 cut(s)	24, 1175, 1293
BmuI	ACTGGG	1 cut(s)	1271
BpiI	GAAGAC	1 cut(s)	905
Bpu1102I	GCTNAGC	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	1217
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	5 cut(s)	98, 198, 207, 802, 1362
BsaXI	ACNNNNNCTCC	4 cut(s)	260, 290, 1100, 1130
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 1222, 1283
Bse1I	ACTGG	3 cut(s)	1277, 1293, 1388
Bse3DI	GCAATG	4 cut(s)	258, 882, 978, 1185
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	5 cut(s)	98, 198, 207, 802, 1362
BseGI	GGATG	3 cut(s)	1087, 1213, 1317
BseLI	CCNNNNNNNGG	3 cut(s)	198, 1222, 1283
BseMI	GCAATG	4 cut(s)	258, 882, 978, 1185
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	3 cut(s)	1277, 1293, 1388
BseRI	GAGGAG	1 cut(s)	698
BseXI	GCAGC	5 cut(s)	78, 200, 401, 859, 963
BshFI	GGCC	3 cut(s)	165, 420, 1112
BsiHKAI	GWGCWC	1 cut(s)	859
BsiSI	CCGG	1 cut(s)	1217
BslFI	GGGAC	2 cut(s)	215, 771
BslI	CCNNNNNNNGG	3 cut(s)	198, 1222, 1283
BsmFI	GGGAC	2 cut(s)	215, 771
BsnI	GGCC	3 cut(s)	165, 420, 1112
Bsp1286I	GDGCHC	1 cut(s)	859
Bsp143I	GATC	4 cut(s)	652, 963, 1212, 1333
Bsp1720I	GCTNAGC	1 cut(s)	38
Bsp19I	CCATGG	1 cut(s)	98
BspACI	CCGC	2 cut(s)	69, 1239
BspANI	GGCC	3 cut(s)	165, 420, 1112
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	104, 890, 1101
BspMI	ACCTGC	1 cut(s)	1179
BspPI	GGATC	2 cut(s)	660, 1207
BsrDI	GCAATG	4 cut(s)	258, 882, 978, 1185
BsrI	ACTGG	3 cut(s)	1277, 1293, 1388
BssECI	CCNNGG	5 cut(s)	98, 198, 207, 802, 1362
BssMI	GATC	4 cut(s)	652, 963, 1212, 1333
BssNI	GRCGYC	1 cut(s)	204
BssSI	CACGAG	1 cut(s)	660
BssT1I	CCWWGG	4 cut(s)	98, 207, 802, 1362
Bst2BI	CACGAG	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	4 cut(s)	563, 762, 1075, 1199
Bst6I	CTCTTC	1 cut(s)	322
BstACI	GRCGYC	1 cut(s)	204
BstAPI	GCANNNNNTGC	2 cut(s)	194, 1132
BstC8I	GCNNGC	5 cut(s)	186, 422, 489, 870, 1133
BstDEI	CTNAG	3 cut(s)	38, 525, 530
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	3 cut(s)	1087, 1213, 1317
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	4 cut(s)	655, 966, 1215, 1336
BstMBI	GATC	4 cut(s)	652, 963, 1212, 1333
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 194, 203, 398, 886, 1132
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	1135
BstSCI	CCNGG	2 cut(s)	197, 1215
BstSFI	CTRYAG	1 cut(s)	559
BstV1I	GCAGC	5 cut(s)	78, 200, 401, 859, 963
BstV2I	GAAGAC	1 cut(s)	905
BsuRI	GGCC	3 cut(s)	165, 420, 1112
BtgI	CCRYGG	1 cut(s)	98
BtgZI	GCGATG	1 cut(s)	1198
BtsCI	GGATG	3 cut(s)	1087, 1213, 1317
BtsI	GCAGTG	2 cut(s)	156, 1264
BtsIMutI	CAGTG	3 cut(s)	156, 1204, 1264
BveI	ACCTGC	1 cut(s)	1179
Cac8I	GCNNGC	5 cut(s)	186, 422, 489, 870, 1133
CfoI	GCGC	1 cut(s)	149
CseI	GACGC	2 cut(s)	212, 345
CviAII	CATG	7 cut(s)	99, 542, 954, 967, 999, 1127, 1132
DdeI	CTNAG	3 cut(s)	38, 525, 530
DpnI	GATC	4 cut(s)	654, 965, 1214, 1335
DpnII	GATC	4 cut(s)	652, 963, 1212, 1333
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	857
Eco130I	CCWWGG	4 cut(s)	98, 207, 802, 1362
Eco24I	GRGCYC	1 cut(s)	859
Eco53kI	GAGCTC	1 cut(s)	857
EcoICRI	GAGCTC	1 cut(s)	857
EcoRI	GAATTC	1 cut(s)	949
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	4 cut(s)	98, 207, 802, 1362
EcoT22I	ATGCAT	1 cut(s)	1137
EcoT38I	GRGCYC	1 cut(s)	859
ErhI	CCWWGG	4 cut(s)	98, 207, 802, 1362
FaeI	CATG	7 cut(s)	102, 545, 957, 970, 1002, 1130, 1135
FaqI	GGGAC	2 cut(s)	215, 771
FatI	CATG	7 cut(s)	98, 541, 953, 966, 998, 1126, 1131
FauI	CCCGC	1 cut(s)	1232
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	5 cut(s)	67, 189, 390, 873, 977
FokI	GGATG	3 cut(s)	1094, 1220, 1324
FriOI	GRGCYC	1 cut(s)	859
Fsp4HI	GCNGC	5 cut(s)	67, 189, 390, 873, 977
FspBI	CTAG	1 cut(s)	474
FspI	TGCGCA	1 cut(s)	148
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	5 cut(s)	67, 189, 390, 873, 977
HaeIII	GGCC	3 cut(s)	165, 420, 1112
HapII	CCGG	1 cut(s)	1217
HgaI	GACGC	2 cut(s)	212, 345
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	7 cut(s)	102, 545, 957, 970, 1002, 1130, 1135
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	7 cut(s)	373, 515, 623, 702, 910, 1067, 1271
HpaII	CCGG	1 cut(s)	1217
HphI	GGTGA	4 cut(s)	126, 169, 1046, 1099
Hpy188I	TCNGA	5 cut(s)	451, 893, 1311, 1323, 1338
Hpy188III	TCNNGA	3 cut(s)	662, 946, 1245
HpyAV	CCTTC	2 cut(s)	1198, 1372
HpyCH4III	ACNGT	4 cut(s)	563, 762, 1075, 1199
HpyCH4V	TGCA	6 cut(s)	188, 875, 979, 1126, 1135, 1188
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 194, 203, 398, 886, 1132
HpyF3I	CTNAG	3 cut(s)	38, 525, 530
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	7 cut(s)	102, 545, 957, 970, 1002, 1130, 1135
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	652, 963, 1212, 1333
LmnI	GCTCC	2 cut(s)	854, 894
Lsp1109I	GCAGC	5 cut(s)	78, 200, 401, 859, 963
LweI	GCATC	3 cut(s)	24, 1175, 1293
MaeI	CTAG	1 cut(s)	474
MaeIII	GTNAC	3 cut(s)	151, 211, 563
MalI	GATC	4 cut(s)	654, 965, 1214, 1335
MboI	GATC	4 cut(s)	652, 963, 1212, 1333
MhlI	GDGCHC	1 cut(s)	859
MluCI	AATT	9 cut(s)	233, 464, 586, 673, 822, 937, 949, 1013, 1329
MlyI	GAGTC	2 cut(s)	696, 919
MmeI	TCCRAC	2 cut(s)	1098, 1143
Mph1103I	ATGCAT	1 cut(s)	1137
MseI	TTAA	5 cut(s)	5, 128, 1053, 1281, 1293
MslI	CAYNNNNRTG	3 cut(s)	97, 971, 1257
MspA1I	CMGCKG	1 cut(s)	69
MspI	CCGG	1 cut(s)	1217
MspR9I	CCNGG	2 cut(s)	199, 1217
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	6 cut(s)	66, 194, 203, 398, 886, 1132
NciI	CCSGG	1 cut(s)	1217
NcoI	CCATGG	1 cut(s)	98
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	4 cut(s)	652, 963, 1212, 1333
NlaIII	CATG	7 cut(s)	102, 545, 957, 970, 1002, 1130, 1135
NlaIV	GGNNCC	3 cut(s)	104, 890, 1101
NmuCI	GTSAC	2 cut(s)	151, 211
NsbI	TGCGCA	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	1137
NspI	RCATGY	1 cut(s)	1135
PaeI	GCATGC	1 cut(s)	1135
PfeI	GAWTC	5 cut(s)	373, 515, 623, 1067, 1271
PkrI	GCNGC	5 cut(s)	68, 190, 391, 874, 978
PleI	GAGTC	2 cut(s)	696, 918
PpsI	GAGTC	2 cut(s)	696, 918
Psp124BI	GAGCTC	1 cut(s)	859
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	3 cut(s)	104, 890, 1101
RseI	CAYNNNNRTG	3 cut(s)	97, 971, 1257
SacI	GAGCTC	1 cut(s)	859
SaqAI	TTAA	5 cut(s)	5, 128, 1053, 1281, 1293
SatI	GCNGC	5 cut(s)	67, 189, 390, 873, 977
Sau3AI	GATC	4 cut(s)	652, 963, 1212, 1333
SchI	GAGTC	2 cut(s)	696, 919
ScrFI	CCNGG	2 cut(s)	199, 1217
SduI	GDGCHC	1 cut(s)	859
SfaNI	GCATC	3 cut(s)	24, 1175, 1293
SfcI	CTRYAG	1 cut(s)	559
SmiMI	CAYNNNNRTG	3 cut(s)	97, 971, 1257
SphI	GCATGC	1 cut(s)	1135
Sse9I	AATT	9 cut(s)	233, 464, 586, 673, 822, 937, 949, 1013, 1329
SsiI	CCGC	2 cut(s)	69, 1239
SspMI	CTAG	1 cut(s)	474
SstI	GAGCTC	1 cut(s)	859
StyD4I	CCNGG	2 cut(s)	197, 1215
StyI	CCWWGG	4 cut(s)	98, 207, 802, 1362
TaaI	ACNGT	4 cut(s)	563, 762, 1075, 1199
TaqI	TCGA	4 cut(s)	408, 655, 720, 1004
TaqII	GACCGA	1 cut(s)	931
TasI	AATT	9 cut(s)	233, 464, 586, 673, 822, 937, 949, 1013, 1329
TfiI	GAWTC	5 cut(s)	373, 515, 623, 1067, 1271
Tru1I	TTAA	5 cut(s)	5, 128, 1053, 1281, 1293
Tru9I	TTAA	5 cut(s)	5, 128, 1053, 1281, 1293
TscAI	CASTG	3 cut(s)	156, 1204, 1264
TseFI	GTSAC	2 cut(s)	151, 211
TseI	GCWGC	5 cut(s)	66, 188, 389, 872, 976
Tsp45I	GTSAC	2 cut(s)	151, 211
TspDTI	ATGAA	5 cut(s)	488, 572, 834, 914, 942
TspRI	CASTG	3 cut(s)	156, 1204, 1264
XapI	RAATTY	2 cut(s)	233, 949
XceI	RCATGY	1 cut(s)	1135
XspI	CTAG	1 cut(s)	474
Zsp2I	ATGCAT	1 cut(s)	1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.