Rh6BG235900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010152
Physical Location & Seq
Forward (+)
44228509 .. 44229943
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG235900.1

Sequence Viewer

Length: 1344 bp
ATGGGAAGTCTCGGCAGTGCACAGCTATCTTTTTCAGTAGCACTGCCATGGCGCCATCCGCCCCCACAGTCAAAATCCTCACTCCAAATCCAATGCGCTCTGACCAAACAAGGGCAACGCTTCCTGACCAAGCTCGCAGCCAATGCCGGCGACCCATCCGTCGCCAACAAATTGATCTCCAAGTTCCTGTCGAGCTCTCCCAAGTCCACTGCTCTCACCACTCTCTCTTATCTTCTCTCTCCTCACACCACCCACCCTCACCTCTCTTCCCTCGCCCTCCCCTTGTACTCCAAAATCACAGAGGCGTCTTGGTTTGAGTGGAATCCAAAGTTGGTAGCTGCCCTGGTTGCGTTGCTTGATAAACAAGGACTACACAGCCAATCAGAAGCTTTAATCTCCGAGACCGTTTCGAAATTAGGCACCAGAGAACGAGAGCTTGCTCAGTTTCATTGCCAATTGGTGGAGTCGCACTCTAAGTTAAGCTCAAAGCGTGGGTTTGATAGGGCCTATACTTACCTCTATCAGCTTCTTCAGAATTCTAGCTCTGTTTATGTAAAACGCCGAGCGTTTGAATCGATGGTTGGTGGTTTATGCGCCATGGATAGGCCTCGTGAAGCGGACGATTTGATTGAGGAGATGAGAGTTAAGGGACTGAAGGCGTCGGTTTTCGAGTTCAGGTCTGTGGTTTATGGCTATGGAAGGTTGGGAATGTTTGAAGAAATGCTGAAGATTGTGGACCAAATGGAGAAGCAGGGGTTTGGTGATGATACTATTTGCTCTAACATGATTCTTTCATCATATGGAGCTCATAATGAGCTGGCTGCGATGGCAATGTGGCTTCGAAAAATGAAAGAATCCAGTGTTCCTTTCTCGATTAGGACTTACAATTCGGTTTTGAATTCGTGCCCTACGATTATGGCAATGCTGCAGGAACCGAAAGCTGTTCCGTGTTCAGTTGAAGAACTGACTGGGATTTTGGATGGTGATGAGGCTTTGGTGGTTAAAGAGTTGGTTGGATCAGCAGTTGTGGATGAGGCGATGATGTGGGATTCGACAGAGGCCAAGTTGGATTTGCATGGCATGCATCTGGGTTCAGCTTACTTGGTAATGCTAGAATGGTTTGAGGCAATGCGATACAGGTTTGACTGTGGGGAGCATGTGGTTCCAGCAGAGGTTGTCATTGTTTGCGGATTGGGAAAGCATAGCAGTGTTAGAGGTGAATCCCCAGTTAAAGATCTGGTAAAAGAGATGATGCGTCGAATGGAAAGTCCGATTAGAATCGATAGGAAGAACGTGGGGTGTTTCATTGCCAAGGGGAGAGCTGTGAAGGACTGGTTATGTTAA

Protein Analysis

447

Amino Acids

49.74

Weight (kDa)

7.97

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17033 AT2G17033 AT2G17033 AT2G17033
fragaria_vesca FvH4_2g15760
malus_domestica MD10G1129400.v1.1
prunus_persica Prupe.8G170200_v2.0.a1
pyrus_communis pycom05g12240
rosa_chinensis RchiOBHm_Chr6g0279111
rosa_laevigata RLG00000013167
rosa_multiflora Rmu_co8289613.1_g000001 Rmu_sc0002080.1_g000001 Rmu_sc0014203.1_g000023
rosa_roxburghii Rroxscaffold_7G00189120
rosa_rugosa Rorug06G0122300
rosa_samantha Rh6AG231000 Rh6BG235900 Rh6CG238000 Rh6DG229600
rosa_wichuraiana Rw0G019940 Rw6G020230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB1I GGYRCC 2 cut(s) 51, 419
AccB7I CCANNNNNTGG 1 cut(s) 460
AciI CCGC 3 cut(s) 59, 617, 1188
AclWI GGATC 1 cut(s) 1024
AcsI RAATTY 2 cut(s) 535, 898
AcuI CTGAAG 3 cut(s) 515, 674, 746
AcyI GRCGYC 3 cut(s) 52, 305, 659
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 111, 460, 603
AgsI TTSAA 4 cut(s) 572, 716, 898, 959
AjnI CCWGG 1 cut(s) 342
AjuI GAANNNNNNNTTGG 4 cut(s) 314, 346, 564, 596
Alw21I GWGCWC 3 cut(s) 22, 197, 808
Alw26I GTCTC 2 cut(s) 14, 395
Alw44I GTGCAC 1 cut(s) 18
AlwI GGATC 1 cut(s) 1024
AoxI GGCC 3 cut(s) 504, 605, 1059
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 137, 338, 821, 925
ApoI RAATTY 2 cut(s) 535, 898
ArsI GACNNNNNNTTYG 6 cut(s) 871, 903, 958, 990, 1252, 1284
AspLEI GCGC 3 cut(s) 54, 98, 596
AspS9I GGNCC 2 cut(s) 504, 736
AsuHPI GGTGA 5 cut(s) 208, 251, 773, 995, 1229
AsuII TTCGAA 2 cut(s) 410, 841
AvaII GGWCC 1 cut(s) 736
BaeGI GKGCMC 2 cut(s) 22, 908
BanI GGYRCC 2 cut(s) 51, 419
BanII GRGCYC 2 cut(s) 197, 808
BauI CACGAG 1 cut(s) 609
Bbv12I GWGCWC 3 cut(s) 22, 197, 808
BbvI GCAGC 4 cut(s) 149, 325, 808, 912
BccI CCATC 5 cut(s) 63, 163, 571, 820, 974
BciT130I CCWGG 1 cut(s) 344
BcoDI GTCTC 2 cut(s) 14, 395
BfaI CTAG 2 cut(s) 540, 1112
BfmI CTRYAG 1 cut(s) 926
BfoI RGCGCY 1 cut(s) 55
BglII AGATCT 1 cut(s) 1234
BisI GCNGC 4 cut(s) 138, 339, 822, 926
BlsI GCNGC 4 cut(s) 139, 340, 823, 927
Bme1390I CCNGG 1 cut(s) 344
Bme18I GGWCC 1 cut(s) 736
BmgT120I GGNCC 2 cut(s) 504, 736
BmiI GGNNCC 4 cut(s) 53, 421, 933, 1164
BmrFI CCNGG 1 cut(s) 344
BmrI ACTGGG 2 cut(s) 978, 1220
BmsI GCATC 2 cut(s) 1093, 1242
BmuI ACTGGG 2 cut(s) 978, 1220
BplI GAGNNNNNCTC 2 cut(s) 455, 487
Bpu14I TTCGAA 2 cut(s) 410, 841
Bsa29I ATCGAT 2 cut(s) 575, 1281
BsaBI GATNNNNATC 1 cut(s) 1277
BsaHI GRCGYC 3 cut(s) 52, 305, 659
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 4 cut(s) 47, 342, 597, 1311
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 460, 603
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 4 cut(s) 858, 973, 1226, 1337
Bse3DI GCAATG 5 cut(s) 448, 837, 927, 1134, 1305
Bse8I GATNNNNATC 1 cut(s) 1277
BseBI CCWGG 1 cut(s) 344
BseCI ATCGAT 2 cut(s) 575, 1281
BseDI CCNNGG 4 cut(s) 47, 342, 597, 1311
BseGI GGATG 4 cut(s) 55, 155, 985, 1036
BseJI GATNNNNATC 1 cut(s) 1277
BseLI CCNNNNNNNGG 3 cut(s) 111, 460, 603
BseMI GCAATG 5 cut(s) 448, 837, 927, 1134, 1305
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 4 cut(s) 858, 973, 1226, 1337
BseRI GAGGAG 2 cut(s) 231, 647
BseSI GKGCMC 2 cut(s) 22, 908
BseXI GCAGC 4 cut(s) 149, 325, 808, 912
BshFI GGCC 3 cut(s) 506, 607, 1061
BshNI GGYRCC 2 cut(s) 51, 419
BshVI ATCGAT 2 cut(s) 575, 1281
BsiHKAI GWGCWC 3 cut(s) 22, 197, 808
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 663
BslI CCNNNNNNNGG 3 cut(s) 111, 460, 603
BsmAI GTCTC 2 cut(s) 14, 395
BsmFI GGGAC 1 cut(s) 663
BsnI GGCC 3 cut(s) 506, 607, 1061
Bso31I GGTCTC 1 cut(s) 395
Bsp119I TTCGAA 2 cut(s) 410, 841
Bsp1286I GDGCHC 4 cut(s) 22, 197, 808, 908
Bsp143I GATC 3 cut(s) 174, 1016, 1234
Bsp19I CCATGG 2 cut(s) 47, 597
BspACI CCGC 3 cut(s) 59, 617, 1188
BspANI GGCC 3 cut(s) 506, 607, 1061
BspCNI CTCAG 1 cut(s) 454
BspDI ATCGAT 2 cut(s) 575, 1281
BspLI GGNNCC 4 cut(s) 53, 421, 933, 1164
BspMAI CTGCAG 1 cut(s) 930
BspPI GGATC 1 cut(s) 1024
BspT104I TTCGAA 2 cut(s) 410, 841
BspT107I GGYRCC 2 cut(s) 51, 419
BspTNI GGTCTC 1 cut(s) 395
BsrDI GCAATG 5 cut(s) 448, 837, 927, 1134, 1305
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 4 cut(s) 858, 973, 1226, 1337
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 4 cut(s) 47, 342, 597, 1311
BssMI GATC 3 cut(s) 174, 1016, 1234
BssNI GRCGYC 3 cut(s) 52, 305, 659
BssSI CACGAG 1 cut(s) 609
BssT1I CCWWGG 3 cut(s) 47, 597, 1311
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 3 cut(s) 69, 406, 1148
Bst6I CTCTTC 1 cut(s) 271
BstACI GRCGYC 3 cut(s) 52, 305, 659
BstAPI GCANNNNNTGC 2 cut(s) 143, 1081
BstBI TTCGAA 2 cut(s) 410, 841
BstC8I GCNNGC 5 cut(s) 135, 148, 438, 819, 1082
BstDEI CTNAG 2 cut(s) 441, 474
BstDSI CCRYGG 2 cut(s) 47, 597
BstF5I GGATG 4 cut(s) 55, 155, 985, 1036
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 3 cut(s) 54, 98, 596
BstKTI GATC 3 cut(s) 177, 1019, 1237
BstMAI GTCTC 2 cut(s) 14, 395
BstMBI GATC 3 cut(s) 174, 1016, 1234
BstMWI GCNNNNNNNGC 5 cut(s) 58, 143, 347, 827, 1081
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 2 cut(s) 1084, 1160
BstSCI CCNGG 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 926
BstSLI GKGCMC 2 cut(s) 22, 908
BstV1I GCAGC 4 cut(s) 149, 325, 808, 912
BstX2I RGATCY 1 cut(s) 1234
BstYI RGATCY 1 cut(s) 1234
Bsu15I ATCGAT 2 cut(s) 575, 1281
BsuRI GGCC 3 cut(s) 506, 607, 1061
BsuTUI ATCGAT 2 cut(s) 575, 1281
BtgI CCRYGG 2 cut(s) 47, 597
BtgZI GCGATG 2 cut(s) 839, 1052
BtsCI GGATG 4 cut(s) 55, 155, 985, 1036
BtsI GCAGTG 4 cut(s) 22, 41, 207, 1213
BtsIMutI CAGTG 5 cut(s) 22, 41, 207, 865, 1213
Cac8I GCNNGC 5 cut(s) 135, 148, 438, 819, 1082
CfoI GCGC 3 cut(s) 54, 98, 596
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 504, 736
ClaI ATCGAT 2 cut(s) 575, 1281
CseI GACGC 3 cut(s) 294, 648, 1244
Csp6I GTAC 1 cut(s) 286
CviAII CATG 6 cut(s) 48, 598, 784, 1076, 1081, 1157
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 441, 474
DinI GGCGCC 1 cut(s) 53
DpnI GATC 3 cut(s) 176, 1018, 1236
DpnII GATC 3 cut(s) 174, 1016, 1234
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 2 cut(s) 195, 806
Eco130I CCWWGG 3 cut(s) 47, 597, 1311
Eco147I AGGCCT 1 cut(s) 607
Eco24I GRGCYC 2 cut(s) 197, 808
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 736
Eco53kI GAGCTC 2 cut(s) 195, 806
Eco57I CTGAAG 3 cut(s) 515, 674, 746
EcoICRI GAGCTC 2 cut(s) 195, 806
EcoO109I RGGNCCY 1 cut(s) 504
EcoRI GAATTC 2 cut(s) 535, 898
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 3 cut(s) 47, 597, 1311
EcoT22I ATGCAT 1 cut(s) 1086
EcoT38I GRGCYC 2 cut(s) 197, 808
EgeI GGCGCC 1 cut(s) 53
EheI GGCGCC 1 cut(s) 53
ErhI CCWWGG 3 cut(s) 47, 597, 1311
FaeI CATG 6 cut(s) 51, 601, 787, 1079, 1084, 1160
FaqI GGGAC 1 cut(s) 663
FatI CATG 6 cut(s) 47, 597, 783, 1075, 1080, 1156
FauNDI CATATG 1 cut(s) 799
Fnu4HI GCNGC 4 cut(s) 138, 339, 822, 926
FokI GGATG 4 cut(s) 42, 142, 992, 1043
FriOI GRGCYC 2 cut(s) 197, 808
Fsp4HI GCNGC 4 cut(s) 138, 339, 822, 926
FspBI CTAG 2 cut(s) 540, 1112
GlaI GCGC 3 cut(s) 53, 97, 595
GluI GCNGC 4 cut(s) 138, 339, 822, 926
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 3 cut(s) 506, 607, 1061
HapII CCGG 1 cut(s) 147
HgaI GACGC 3 cut(s) 294, 648, 1244
HhaI GCGC 3 cut(s) 54, 98, 596
Hin1I GRCGYC 3 cut(s) 52, 305, 659
Hin1II CATG 6 cut(s) 51, 601, 787, 1079, 1084, 1160
Hin6I GCGC 3 cut(s) 52, 96, 594
HinP1I GCGC 3 cut(s) 52, 96, 594
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 8 cut(s) 322, 464, 572, 787, 854, 1049, 1220, 1278
HpaII CCGG 1 cut(s) 147
HphI GGTGA 5 cut(s) 208, 251, 773, 995, 1229
Hpy166II GTNNAC 3 cut(s) 20, 207, 736
Hpy188I TCNGA 5 cut(s) 102, 385, 400, 534, 1272
Hpy188III TCNNGA 3 cut(s) 124, 611, 871
Hpy8I GTNNAC 3 cut(s) 20, 207, 736
Hpy99I CGWCG 3 cut(s) 164, 664, 1260
HpyAV CCTTC 3 cut(s) 649, 693, 1321
HpyCH4III ACNGT 3 cut(s) 69, 406, 1148
HpyCH4IV ACGT 1 cut(s) 1293
HpyCH4V TGCA 4 cut(s) 20, 928, 1075, 1084
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 143, 347, 827, 1081
HpyF3I CTNAG 2 cut(s) 441, 474
HpySE526I ACGT 1 cut(s) 1293
Hsp92I GRCGYC 3 cut(s) 52, 305, 659
Hsp92II CATG 6 cut(s) 51, 601, 787, 1079, 1084, 1160
HspAI GCGC 3 cut(s) 52, 96, 594
KasI GGCGCC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 3 cut(s) 174, 1016, 1234
LmnI GCTCC 2 cut(s) 803, 1153
Lsp1109I GCAGC 4 cut(s) 149, 325, 808, 912
LweI GCATC 2 cut(s) 1093, 1242
MaeI CTAG 2 cut(s) 540, 1112
MaeII ACGT 1 cut(s) 1293
MalI GATC 3 cut(s) 176, 1018, 1236
MboI GATC 3 cut(s) 174, 1016, 1234
MboII GAAGA 7 cut(s) 224, 258, 521, 728, 739, 971, 1300
MfeI CAATTG 1 cut(s) 455
MflI RGATCY 1 cut(s) 1234
MhlI GDGCHC 4 cut(s) 22, 197, 808, 908
MluCI AATT 6 cut(s) 170, 413, 455, 535, 886, 898
Mly113I GGCGCC 1 cut(s) 52
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 2 cut(s) 994, 1047
Mph1103I ATGCAT 1 cut(s) 1086
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 6 cut(s) 392, 479, 645, 1002, 1230, 1342
MslI CAYNNNNRTG 2 cut(s) 46, 1206
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 344
MunI CAATTG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 5 cut(s) 58, 143, 347, 827, 1081
NaeI GCCGGC 1 cut(s) 148
NarI GGCGCC 1 cut(s) 52
NcoI CCATGG 2 cut(s) 47, 597
NdeI CATATG 1 cut(s) 799
NdeII GATC 3 cut(s) 174, 1016, 1234
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 6 cut(s) 51, 601, 787, 1079, 1084, 1160
NlaIV GGNNCC 4 cut(s) 53, 421, 933, 1164
NmeAIII GCCGAG 1 cut(s) 587
NsiI ATGCAT 1 cut(s) 1086
NspI RCATGY 2 cut(s) 1084, 1160
NspV TTCGAA 2 cut(s) 410, 841
PaeI GCATGC 1 cut(s) 1084
PceI AGGCCT 1 cut(s) 607
PcsI WCGNNNNNNNCGW 1 cut(s) 908
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 7 cut(s) 322, 572, 787, 854, 1049, 1220, 1278
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 4 cut(s) 139, 340, 823, 927
PleI GAGTC 1 cut(s) 472
PluTI GGCGCC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 472
Psp124BI GAGCTC 2 cut(s) 197, 808
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 4 cut(s) 53, 421, 933, 1164
PspPI GGNCC 2 cut(s) 504, 736
PstI CTGCAG 1 cut(s) 930
PsuI RGATCY 1 cut(s) 1234
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 2 cut(s) 46, 1206
SacI GAGCTC 2 cut(s) 197, 808
SaqAI TTAA 6 cut(s) 392, 479, 645, 1002, 1230, 1342
SatI GCNGC 4 cut(s) 138, 339, 822, 926
Sau3AI GATC 3 cut(s) 174, 1016, 1234
Sau96I GGNCC 2 cut(s) 504, 736
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 4 cut(s) 22, 197, 808, 908
SfaNI GCATC 2 cut(s) 1093, 1242
SfcI CTRYAG 1 cut(s) 926
SfoI GGCGCC 1 cut(s) 53
SfuI TTCGAA 2 cut(s) 410, 841
SinI GGWCC 1 cut(s) 736
SmiMI CAYNNNNRTG 2 cut(s) 46, 1206
SphI GCATGC 1 cut(s) 1084
Sse9I AATT 6 cut(s) 170, 413, 455, 535, 886, 898
SseBI AGGCCT 1 cut(s) 607
SsiI CCGC 3 cut(s) 59, 617, 1188
SspDI GGCGCC 1 cut(s) 51
SspMI CTAG 2 cut(s) 540, 1112
SstI GAGCTC 2 cut(s) 197, 808
StuI AGGCCT 1 cut(s) 607
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 3 cut(s) 47, 597, 1311
TaaI ACNGT 3 cut(s) 69, 406, 1148
TaiI ACGT 1 cut(s) 1296
TaqI TCGA 9 cut(s) 191, 410, 575, 669, 841, 872, 1052, 1258, 1281
TasI AATT 6 cut(s) 170, 413, 455, 535, 886, 898
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 7 cut(s) 322, 572, 787, 854, 1049, 1220, 1278
Tru1I TTAA 6 cut(s) 392, 479, 645, 1002, 1230, 1342
Tru9I TTAA 6 cut(s) 392, 479, 645, 1002, 1230, 1342
TscAI CASTG 5 cut(s) 22, 48, 214, 865, 1213
TseI GCWGC 4 cut(s) 137, 338, 821, 925
TspDTI ATGAA 4 cut(s) 437, 783, 863, 1294
TspGWI ACGGA 2 cut(s) 148, 936
TspRI CASTG 5 cut(s) 22, 48, 214, 865, 1213
Van91I CCANNNNNTGG 1 cut(s) 460
VneI GTGCAC 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 736
XapI RAATTY 2 cut(s) 535, 898
XceI RCATGY 2 cut(s) 1084, 1160
XspI CTAG 2 cut(s) 540, 1112
Zsp2I ATGCAT 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.