FvH4_2g15760

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
13809636 .. 13811715
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15760.t1

Sequence Viewer

Length: 1347 bp
ATGGGAGGCCTCGGCAGTGCACAGCTATCATTTTCAGTAGCATTGCCATGGCGCCATGATCCTCCCCAACACTCAAAACTCTCACTCCAAATCCAATGCGCTCTGACCAAACAAGGCCAACGCTTCCTGACCAAGCTCGCAGCCAATGCCGGCAACCCATCCGTCGCCAACAAATTAATCTCCAAGTTCCTGTCAACCTCTCCCAAGTCCACTGCTCTCACCACTCTCTCTTATCTACTGTCTCCTCACACCGCCCACCCTCACCTCTCTTCCCTCGCCCTCCCCATGTATTCCAAGATCACAGAGGCGTCTTGGTTTGAGTGGAATCCAAAGCTGGTAGCTGCCCTTGTTGCGTTGCTTGCTAAACAAGGACAACAGAGCCAATCAGAAGCGTTAATCTCCGAGACCATTTCCAAGTTGGGCAATAAGGAACGTGAGCTTGTTCAGTTTCATTGCCAGTTGGTGGAGTCACACTCGAAGATGAGCTCAAAATGTGGGTTTGATAGGGCATGTACTTATCTCCATCAGCTTCTTCAGAATTCTAGCTCTGTTTATGTAAAACGCCGAGCTTTCGAATCGATGGTTGGTGGTTTGTGTGCGATGGATAGGCCTGGTGAAGCGGACGAGTTGATTGAGGAGATGAGAGTTAAGGGACTGAAGGCGTCGGTTTTCGAGTTCAGGTCTGTGGTTTATGGCTATGGAAGGTTGGGAATGTTTGAAGAAATGCTGAAGATTGTGGACCAAATGGAGAAGCAGGGGTTTGGTGATGATACTATATGCTGTAATATGGTACTTTCGTCATATGGAGCACATAATGAGCTGGCTGCAATGGCAAACTGGCTTCGGAAAATGAAAGAGTCGAGTGTTCCTTTCTCGGTTAGGACTTACAATTCGGTGTTGAATTCGTGTCCTACGATCATGGCAATGCTGCAGGAACCGAAAGCTGTTCCATGTTCGGTTGGAGAACTGAGTGGGGTTTTGGATGGTGATGAGGCTTTGGTGGTTAAGGAGCTGGTTGGATCGGCAGTTGTGGATGAGGCGATGGTGTGGGATTCTGCAGAGGCCAAGTTGGATTTGCATGGCATGCATTTGGGTTCAGCTTACTTGGTAATGCTGGAGTGGTTTGAGGCAATGGGAAACAGGTTCAAGAGTGCGGAGTGTGTGGTTCCAGCGGAGGTTGTCATTGTTTGCGGACTGGGAAAGCATAGCAGTGTTAGAGGTGAATCCCCGGTTAAAGATCTGGTTAAAGAGATGATGCATCAAATGGAAAGTCCGATGAGAATCGACAGGAAGAATGTCGGGTGTTTCATTGCCAAGGGAAGAGCTGTGAAGGACTGGTTGTGTTAA

Protein Analysis

449

Amino Acids

49.28

Weight (kDa)

7.55

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 257 - 303 5.9e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010152)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 51
AccB7I CCANNNNNTGG 1 cut(s) 463
AciI CCGC 5 cut(s) 252, 620, 1154, 1172, 1191
AclWI GGATC 2 cut(s) 53, 1027
AcsI RAATTY 2 cut(s) 538, 901
AcuI CTGAAG 3 cut(s) 518, 677, 749
AcyI GRCGYC 3 cut(s) 52, 308, 662
AfaI GTAC 2 cut(s) 514, 792
AfiI CCNNNNNNNGG 1 cut(s) 463
AgsI TTSAA 3 cut(s) 719, 901, 1147
AjnI CCWGG 1 cut(s) 610
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
Alw21I GWGCWC 3 cut(s) 22, 488, 811
Alw26I GTCTC 2 cut(s) 246, 398
Alw44I GTGCAC 1 cut(s) 18
AlwI GGATC 2 cut(s) 53, 1027
AoxI GGCC 4 cut(s) 7, 115, 608, 1062
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 140, 341, 824, 928
ApoI RAATTY 2 cut(s) 538, 901
ArsI GACNNNNNNTTYG 4 cut(s) 874, 906, 1255, 1287
AseI ATTAAT 1 cut(s) 176
AspLEI GCGC 2 cut(s) 54, 101
AspS9I GGNCC 1 cut(s) 739
AsuC2I CCSGG 1 cut(s) 1229
AsuHPI GGTGA 6 cut(s) 211, 254, 626, 776, 998, 1232
AsuII TTCGAA 1 cut(s) 573
AvaII GGWCC 1 cut(s) 739
BaeGI GKGCMC 1 cut(s) 22
BaeI ACNNNNGTAYC 2 cut(s) 782, 815
BanI GGYRCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 488
Bbv12I GWGCWC 3 cut(s) 22, 488, 811
BbvI GCAGC 4 cut(s) 152, 328, 811, 915
BccI CCATC 6 cut(s) 166, 531, 574, 595, 977, 1036
BciT130I CCWGG 1 cut(s) 612
BcnI CCSGG 1 cut(s) 1229
BcoDI GTCTC 2 cut(s) 246, 398
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 2 cut(s) 929, 1056
BfoI RGCGCY 1 cut(s) 55
BglII AGATCT 1 cut(s) 1237
BisI GCNGC 4 cut(s) 141, 342, 825, 929
BlsI GCNGC 4 cut(s) 142, 343, 826, 930
Bme1390I CCNGG 2 cut(s) 612, 1229
Bme18I GGWCC 1 cut(s) 739
BmgT120I GGNCC 1 cut(s) 739
BmiI GGNNCC 3 cut(s) 53, 936, 1167
BmrFI CCNGG 2 cut(s) 612, 1229
BmrI ACTGGG 1 cut(s) 1205
BmsI GCATC 2 cut(s) 1245, 1267
BmuI ACTGGG 1 cut(s) 1205
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 1 cut(s) 1136
Bpu14I TTCGAA 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 1229
Bsa29I ATCGAT 1 cut(s) 578
BsaBI GATNNNNATC 1 cut(s) 1280
BsaHI GRCGYC 3 cut(s) 52, 308, 662
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 4 cut(s) 10, 47, 1227, 1314
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 4 cut(s) 457, 842, 1200, 1340
Bse3DI GCAATG 6 cut(s) 41, 451, 834, 930, 1137, 1308
Bse8I GATNNNNATC 1 cut(s) 1280
BseBI CCWGG 1 cut(s) 612
BseCI ATCGAT 1 cut(s) 578
BseDI CCNNGG 4 cut(s) 10, 47, 1227, 1314
BseGI GGATG 3 cut(s) 158, 988, 1039
BseJI GATNNNNATC 1 cut(s) 1280
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMI GCAATG 6 cut(s) 41, 451, 834, 930, 1137, 1308
BseMII CTCAG 1 cut(s) 959
BseNI ACTGG 4 cut(s) 457, 842, 1200, 1340
BseRI GAGGAG 2 cut(s) 234, 650
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 4 cut(s) 152, 328, 811, 915
BshFI GGCC 4 cut(s) 9, 117, 610, 1064
BshNI GGYRCC 1 cut(s) 51
BshVI ATCGAT 1 cut(s) 578
BsiHKAI GWGCWC 3 cut(s) 22, 488, 811
BsiSI CCGG 2 cut(s) 150, 1229
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 1 cut(s) 463
BsmAI GTCTC 2 cut(s) 246, 398
BsmFI GGGAC 1 cut(s) 666
BsnI GGCC 4 cut(s) 9, 117, 610, 1064
Bso31I GGTCTC 1 cut(s) 398
Bsp119I TTCGAA 1 cut(s) 573
Bsp1286I GDGCHC 3 cut(s) 22, 488, 811
Bsp143I GATC 5 cut(s) 58, 297, 915, 1019, 1237
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 5 cut(s) 252, 620, 1154, 1172, 1191
BspANI GGCC 4 cut(s) 9, 117, 610, 1064
BspCNI CTCAG 1 cut(s) 960
BspDI ATCGAT 1 cut(s) 578
BspLI GGNNCC 3 cut(s) 53, 936, 1167
BspMAI CTGCAG 2 cut(s) 933, 1060
BspPI GGATC 2 cut(s) 53, 1027
BspQI GCTCTTC 1 cut(s) 1315
BspT104I TTCGAA 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 398
BsrDI GCAATG 6 cut(s) 41, 451, 834, 930, 1137, 1308
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 4 cut(s) 457, 842, 1200, 1340
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 4 cut(s) 10, 47, 1227, 1314
BssMI GATC 5 cut(s) 58, 297, 915, 1019, 1237
BssNI GRCGYC 3 cut(s) 52, 308, 662
BssT1I CCWWGG 2 cut(s) 47, 1314
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 2 cut(s) 274, 1315
BstACI GRCGYC 3 cut(s) 52, 308, 662
BstAPI GCANNNNNTGC 2 cut(s) 146, 1084
BstBI TTCGAA 1 cut(s) 573
BstC8I GCNNGC 5 cut(s) 138, 151, 360, 822, 1085
BstDEI CTNAG 1 cut(s) 968
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 3 cut(s) 158, 988, 1039
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 2 cut(s) 54, 101
BstKTI GATC 5 cut(s) 61, 300, 918, 1022, 1240
BstMAI GTCTC 2 cut(s) 246, 398
BstMBI GATC 5 cut(s) 58, 297, 915, 1019, 1237
BstMWI GCNNNNNNNGC 5 cut(s) 146, 350, 359, 830, 1084
BstNI CCWGG 1 cut(s) 612
BstNSI RCATGY 2 cut(s) 513, 1087
BstSCI CCNGG 2 cut(s) 610, 1227
BstSFI CTRYAG 2 cut(s) 929, 1056
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 4 cut(s) 152, 328, 811, 915
BstX2I RGATCY 1 cut(s) 1237
BstYI RGATCY 1 cut(s) 1237
Bsu15I ATCGAT 1 cut(s) 578
BsuRI GGCC 4 cut(s) 9, 117, 610, 1064
BsuTUI ATCGAT 1 cut(s) 578
BtgI CCRYGG 1 cut(s) 47
BtgZI GCGATG 2 cut(s) 614, 1055
BtsCI GGATG 3 cut(s) 158, 988, 1039
BtsI GCAGTG 3 cut(s) 22, 210, 1216
BtsIMutI CAGTG 3 cut(s) 22, 210, 1216
Cac8I GCNNGC 5 cut(s) 138, 151, 360, 822, 1085
CfoI GCGC 2 cut(s) 54, 101
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 739
ClaI ATCGAT 1 cut(s) 578
CseI GACGC 2 cut(s) 297, 651
Csp6I GTAC 2 cut(s) 513, 791
CviAII CATG 8 cut(s) 48, 56, 286, 510, 919, 951, 1079, 1084
CviQI GTAC 2 cut(s) 513, 791
DdeI CTNAG 1 cut(s) 968
DinI GGCGCC 1 cut(s) 53
DpnI GATC 5 cut(s) 60, 299, 917, 1021, 1239
DpnII GATC 5 cut(s) 58, 297, 915, 1019, 1237
Eam1104I CTCTTC 2 cut(s) 274, 1315
EarI CTCTTC 2 cut(s) 274, 1315
Ecl136II GAGCTC 1 cut(s) 486
Eco130I CCWWGG 2 cut(s) 47, 1314
Eco147I AGGCCT 2 cut(s) 9, 610
Eco24I GRGCYC 1 cut(s) 488
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 739
Eco53kI GAGCTC 1 cut(s) 486
Eco57I CTGAAG 3 cut(s) 518, 677, 749
EcoICRI GAGCTC 1 cut(s) 486
EcoRI GAATTC 2 cut(s) 538, 901
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 47, 1314
EcoT22I ATGCAT 2 cut(s) 1089, 1260
EcoT38I GRGCYC 1 cut(s) 488
EgeI GGCGCC 1 cut(s) 53
EheI GGCGCC 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 47, 1314
FaeI CATG 8 cut(s) 51, 59, 289, 513, 922, 954, 1082, 1087
FaqI GGGAC 1 cut(s) 666
FatI CATG 8 cut(s) 47, 55, 285, 509, 918, 950, 1078, 1083
FauNDI CATATG 1 cut(s) 802
Fnu4HI GCNGC 4 cut(s) 141, 342, 825, 929
FokI GGATG 3 cut(s) 145, 995, 1046
FriOI GRGCYC 1 cut(s) 488
Fsp4HI GCNGC 4 cut(s) 141, 342, 825, 929
FspBI CTAG 1 cut(s) 543
GlaI GCGC 2 cut(s) 53, 100
GluI GCNGC 4 cut(s) 141, 342, 825, 929
GsuI CTGGAG 1 cut(s) 1136
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 4 cut(s) 9, 117, 610, 1064
HapII CCGG 2 cut(s) 150, 1229
HgaI GACGC 2 cut(s) 297, 651
HhaI GCGC 2 cut(s) 54, 101
Hin1I GRCGYC 3 cut(s) 52, 308, 662
Hin1II CATG 8 cut(s) 51, 59, 289, 513, 922, 954, 1082, 1087
Hin6I GCGC 2 cut(s) 52, 99
HinP1I GCGC 2 cut(s) 52, 99
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 7 cut(s) 325, 467, 575, 857, 1052, 1223, 1281
HpaII CCGG 2 cut(s) 150, 1229
HphI GGTGA 6 cut(s) 211, 254, 626, 776, 998, 1232
Hpy166II GTNNAC 4 cut(s) 20, 195, 210, 739
Hpy188I TCNGA 6 cut(s) 105, 388, 403, 537, 846, 1275
Hpy188III TCNNGA 2 cut(s) 127, 1147
Hpy8I GTNNAC 4 cut(s) 20, 195, 210, 739
Hpy99I CGWCG 2 cut(s) 167, 667
HpyAV CCTTC 3 cut(s) 652, 696, 1324
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 7 cut(s) 20, 827, 931, 1058, 1078, 1087, 1258
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 350, 359, 830, 1084
HpyF3I CTNAG 1 cut(s) 968
HpySE526I ACGT 1 cut(s) 433
Hsp92I GRCGYC 3 cut(s) 52, 308, 662
Hsp92II CATG 8 cut(s) 51, 59, 289, 513, 922, 954, 1082, 1087
HspAI GCGC 2 cut(s) 52, 99
KasI GGCGCC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 5 cut(s) 58, 297, 915, 1019, 1237
LguI GCTCTTC 1 cut(s) 1315
LmnI GCTCC 2 cut(s) 806, 1009
Lsp1109I GCAGC 4 cut(s) 152, 328, 811, 915
LweI GCATC 2 cut(s) 1245, 1267
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 1 cut(s) 468
MalI GATC 5 cut(s) 60, 299, 917, 1021, 1239
MboI GATC 5 cut(s) 58, 297, 915, 1019, 1237
MboII GAAGA 7 cut(s) 261, 490, 524, 731, 742, 1303, 1332
MflI RGATCY 1 cut(s) 1237
MhlI GDGCHC 3 cut(s) 22, 488, 811
MluCI AATT 4 cut(s) 173, 538, 889, 901
Mly113I GGCGCC 1 cut(s) 52
MlyI GAGTC 2 cut(s) 476, 866
MmeI TCCRAC 3 cut(s) 940, 997, 1050
Mph1103I ATGCAT 2 cut(s) 1089, 1260
MroNI GCCGGC 1 cut(s) 149
MseI TTAA 7 cut(s) 176, 395, 648, 1005, 1233, 1245, 1345
MslI CAYNNNNRTG 3 cut(s) 46, 923, 1209
MspA1I CMGCKG 1 cut(s) 1172
MspI CCGG 2 cut(s) 150, 1229
MspR9I CCNGG 2 cut(s) 612, 1229
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 5 cut(s) 146, 350, 359, 830, 1084
NaeI GCCGGC 1 cut(s) 151
NarI GGCGCC 1 cut(s) 52
NciI CCSGG 1 cut(s) 1229
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 802
NdeII GATC 5 cut(s) 58, 297, 915, 1019, 1237
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 8 cut(s) 51, 59, 289, 513, 922, 954, 1082, 1087
NlaIV GGNNCC 3 cut(s) 53, 936, 1167
NmeAIII GCCGAG 1 cut(s) 590
NmuCI GTSAC 1 cut(s) 468
NsiI ATGCAT 2 cut(s) 1089, 1260
NspI RCATGY 2 cut(s) 513, 1087
NspV TTCGAA 1 cut(s) 573
PaeI GCATGC 1 cut(s) 1087
PceI AGGCCT 2 cut(s) 9, 610
PciSI GCTCTTC 1 cut(s) 1315
PcsI WCGNNNNNNNCGW 1 cut(s) 911
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 5 cut(s) 325, 575, 1052, 1223, 1281
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 4 cut(s) 142, 343, 826, 930
PleI GAGTC 2 cut(s) 475, 865
PluTI GGCGCC 1 cut(s) 55
PpsI GAGTC 2 cut(s) 475, 865
PshBI ATTAAT 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 610
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 3 cut(s) 53, 936, 1167
PspPI GGNCC 1 cut(s) 739
PstI CTGCAG 2 cut(s) 933, 1060
PsuI RGATCY 1 cut(s) 1237
RsaI GTAC 2 cut(s) 514, 792
RsaNI GTAC 2 cut(s) 513, 791
RseI CAYNNNNRTG 3 cut(s) 46, 923, 1209
SacI GAGCTC 1 cut(s) 488
SapI GCTCTTC 1 cut(s) 1315
SaqAI TTAA 7 cut(s) 176, 395, 648, 1005, 1233, 1245, 1345
SatI GCNGC 4 cut(s) 141, 342, 825, 929
Sau3AI GATC 5 cut(s) 58, 297, 915, 1019, 1237
Sau96I GGNCC 1 cut(s) 739
SchI GAGTC 2 cut(s) 476, 866
ScrFI CCNGG 2 cut(s) 612, 1229
SduI GDGCHC 3 cut(s) 22, 488, 811
SfaNI GCATC 2 cut(s) 1245, 1267
SfcI CTRYAG 2 cut(s) 929, 1056
SfoI GGCGCC 1 cut(s) 53
SfuI TTCGAA 1 cut(s) 573
SinI GGWCC 1 cut(s) 739
SmiMI CAYNNNNRTG 3 cut(s) 46, 923, 1209
SphI GCATGC 1 cut(s) 1087
Sse9I AATT 4 cut(s) 173, 538, 889, 901
SseBI AGGCCT 2 cut(s) 9, 610
SsiI CCGC 5 cut(s) 252, 620, 1154, 1172, 1191
SspDI GGCGCC 1 cut(s) 51
SspMI CTAG 1 cut(s) 543
SstI GAGCTC 1 cut(s) 488
StuI AGGCCT 2 cut(s) 9, 610
StyD4I CCNGG 2 cut(s) 610, 1227
StyI CCWWGG 2 cut(s) 47, 1314
TaaI ACNGT 1 cut(s) 240
TaiI ACGT 1 cut(s) 436
TaqI TCGA 6 cut(s) 476, 573, 578, 672, 860, 1284
TasI AATT 4 cut(s) 173, 538, 889, 901
TatI WGTACW 1 cut(s) 512
TfiI GAWTC 5 cut(s) 325, 575, 1052, 1223, 1281
Tru1I TTAA 7 cut(s) 176, 395, 648, 1005, 1233, 1245, 1345
Tru9I TTAA 7 cut(s) 176, 395, 648, 1005, 1233, 1245, 1345
TscAI CASTG 3 cut(s) 22, 217, 1216
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 4 cut(s) 140, 341, 824, 928
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 3 cut(s) 440, 866, 1297
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 3 cut(s) 22, 217, 1216
Van91I CCANNNNNTGG 1 cut(s) 463
VneI GTGCAC 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 739
VspI ATTAAT 1 cut(s) 176
XapI RAATTY 2 cut(s) 538, 901
XceI RCATGY 2 cut(s) 513, 1087
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XspI CTAG 1 cut(s) 543
Zsp2I ATGCAT 2 cut(s) 1089, 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.