Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010152

Physical Location & Seq

Genomic Coordinates Reverse (-)

16912690 .. 16913588

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0122300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGACGGAATCTGCCAGGAGCAATGAAGGCCAAAGATCAAGAAGAGAATCGCCAACAAAATTAAAGATCATCCTGGATCGACACCGGCCGTTCCTTCCAAAGTGGAAGATGGCATTTGTAACATCATGTGTCTTTGCAGTCTTACTGGATCCTTTGTTCTTTTATATTCCTATTGTCAACAAGGATATGAAGTGCGTTGGCTTGGACAAACATTTGAAGGCAATAGTTATTTCATTACGATCAGCAACGGATCTCTTGTATATATTGGACATTGCTATTCAAATTTATATTGAACCTAAAGTTCCAACATATAGGGTCATGGGGAGATCATATTGGCATACGATGGCCTTGACAAAAGGAATGATATTAGTTGAGGATGCATTGGCAATGATTAAGCTGATTTGGCAAGTCTGGTCACACATCCTAGTTAACTTTTTAGCTGTTCTTCCCATTCCTCAGGTCGTGATTCTTATTTTCTTGGACTCAAGTTCTTTGAATGCAATGAAGTTTCTGGCTTTTCTTGCGCTGTTGCAATATGTGCCACGCACGCTTCGCATTTACTTATTGTGTACAGATCTTAACAAGACTCCTATGAGAGAGACTGAAGTATGGATTTTATTCAAAGGTGCATTCAGTTTCTTTCTCTACATCCTTGCTAGTCATGTAAGTTTCAATCTCATGTATTACTTAATTCTAATTTCTTCATTGAATTACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

239

Amino Acids

27.77

Weight (kDa)

9.56

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17033 AT2G17033 AT2G17033 AT2G17033
fragaria_vesca	FvH4_2g15760
malus_domestica	MD10G1129400.v1.1
prunus_persica	Prupe.8G170200_v2.0.a1
pyrus_communis	pycom05g12240
rosa_chinensis	RchiOBHm_Chr6g0279111
rosa_laevigata	RLG00000013167
rosa_multiflora	Rmu_co8289613.1_g000001 Rmu_sc0002080.1_g000001 Rmu_sc0014203.1_g000023
rosa_roxburghii	Rroxscaffold_7G00189120
rosa_rugosa	Rorug06G0122300
rosa_samantha	Rh6AG231000 Rh6BG235900 Rh6CG238000 Rh6DG229600
rosa_wichuraiana	Rw0G019940 Rw6G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	84, 143, 156, 258
AcoI	YGGCCR	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	624
AfaI	GTAC	1 cut(s)	571
AgsI	TTSAA	7 cut(s)	217, 281, 293, 496, 622, 673, 709
AjnI	CCWGG	2 cut(s)	14, 72
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	2 cut(s)	397, 440
AluI	AGCT	2 cut(s)	397, 440
Alw26I	GTCTC	1 cut(s)	593
AlwI	GGATC	4 cut(s)	84, 143, 156, 258
AoxI	GGCC	3 cut(s)	28, 86, 345
ApoI	RAATTY	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	526
AxyI	CCTNAGG	1 cut(s)	456
BamHI	GGATCC	1 cut(s)	148
BccI	CCATC	2 cut(s)	103, 337
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	16, 74
BcoDI	GTCTC	1 cut(s)	593
BfaI	CTAG	2 cut(s)	425, 657
BglII	AGATCT	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	16, 74
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	16, 74
BmsI	GCATC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	469
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	150
Bse21I	CCTNAGG	1 cut(s)	456
Bse3DI	GCAATG	4 cut(s)	28, 270, 393, 507
BseBI	CCWGG	2 cut(s)	16, 74
BseGI	GGATG	4 cut(s)	69, 382, 420, 648
BseMI	GCAATG	4 cut(s)	28, 270, 393, 507
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	1 cut(s)	150
BseX3I	CGGCCG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	30, 88, 347
BsiEI	CGRYCG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	593
BsmI	GAATGC	2 cut(s)	502, 629
BsnI	GGCC	3 cut(s)	30, 88, 347
Bsp1407I	TGTACA	1 cut(s)	569
Bsp143I	GATC	8 cut(s)	35, 66, 76, 148, 239, 250, 326, 574
BspANI	GGCC	3 cut(s)	30, 88, 347
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	4 cut(s)	84, 143, 156, 258
BsrDI	GCAATG	4 cut(s)	28, 270, 393, 507
BsrFI	RCCGGY	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	84
BssMI	GATC	8 cut(s)	35, 66, 76, 148, 239, 250, 326, 574
Bst2UI	CCWGG	2 cut(s)	16, 74
Bst6I	CTCTTC	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstAUI	TGTACA	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	456
BstF5I	GGATG	4 cut(s)	69, 382, 420, 648
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	8 cut(s)	38, 69, 79, 151, 242, 253, 329, 577
BstMAI	GTCTC	1 cut(s)	593
BstMBI	GATC	8 cut(s)	35, 66, 76, 148, 239, 250, 326, 574
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 403, 521, 538, 547, 552
BstNI	CCWGG	2 cut(s)	16, 74
BstSCI	CCNGG	2 cut(s)	14, 72
BstX2I	RGATCY	3 cut(s)	148, 250, 574
BstYI	RGATCY	3 cut(s)	148, 250, 574
BstZI	CGGCCG	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	30, 88, 347
BtsCI	GGATG	4 cut(s)	69, 382, 420, 648
Cac8I	GCNNGC	1 cut(s)	548
CfoI	GCGC	1 cut(s)	526
Cfr10I	RCCGGY	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	570
CviAII	CATG	4 cut(s)	126, 319, 662, 679
CviJI	RGCY	7 cut(s)	30, 88, 201, 347, 397, 440, 515
CviKI_1	RGCY	7 cut(s)	30, 88, 201, 347, 397, 440, 515
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	8 cut(s)	37, 68, 78, 150, 241, 252, 328, 576
DpnII	GATC	8 cut(s)	35, 66, 76, 148, 239, 250, 326, 574
EaeI	YGGCCR	1 cut(s)	86
EagI	CGGCCG	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
EclXI	CGGCCG	1 cut(s)	86
Eco52I	CGGCCG	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	624
Eco81I	CCTNAGG	1 cut(s)	456
EcoRII	CCWGG	2 cut(s)	14, 72
EcoT22I	ATGCAT	1 cut(s)	382
FaeI	CATG	4 cut(s)	129, 322, 665, 682
FatI	CATG	4 cut(s)	125, 318, 661, 678
FokI	GGATG	4 cut(s)	56, 389, 407, 635
FspBI	CTAG	2 cut(s)	425, 657
GlaI	GCGC	1 cut(s)	525
HaeIII	GGCC	3 cut(s)	30, 88, 347
HapII	CCGG	1 cut(s)	85
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	4 cut(s)	129, 322, 665, 682
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HincII	GTYRAC	2 cut(s)	178, 430
HindII	GTYRAC	2 cut(s)	178, 430
HinfI	GANTC	5 cut(s)	8, 47, 466, 482, 586
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	85
Hpy166II	GTNNAC	3 cut(s)	178, 430, 570
Hpy188III	TCNNGA	2 cut(s)	39, 463
Hpy8I	GTNNAC	3 cut(s)	178, 430, 570
HpyAV	CCTTC	3 cut(s)	20, 104, 211
HpyCH4V	TGCA	5 cut(s)	137, 380, 500, 532, 629
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 403, 521, 538, 547, 552
HpyF3I	CTNAG	1 cut(s)	456
Hsp92II	CATG	4 cut(s)	129, 322, 665, 682
HspAI	GCGC	1 cut(s)	524
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	8 cut(s)	35, 66, 76, 148, 239, 250, 326, 574
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	8 cut(s)	28, 59, 86, 98, 131, 397, 443, 497
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	425, 657
MaeIII	GTNAC	2 cut(s)	118, 414
MalI	GATC	8 cut(s)	37, 68, 78, 150, 241, 252, 328, 576
MboI	GATC	8 cut(s)	35, 66, 76, 148, 239, 250, 326, 574
MboII	GAAGA	4 cut(s)	54, 118, 437, 693
MflI	RGATCY	3 cut(s)	148, 250, 574
MluCI	AATT	5 cut(s)	59, 282, 690, 696, 709
MlyI	GAGTC	2 cut(s)	476, 580
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	2 cut(s)	367, 465
Mph1103I	ATGCAT	1 cut(s)	382
MseI	TTAA	5 cut(s)	62, 393, 429, 579, 689
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	16, 74
Mva1269I	GAATGC	2 cut(s)	502, 629
MvaI	CCWGG	2 cut(s)	16, 74
MwoI	GCNNNNNNNGC	6 cut(s)	27, 403, 521, 538, 547, 552
NdeII	GATC	8 cut(s)	35, 66, 76, 148, 239, 250, 326, 574
NlaIII	CATG	4 cut(s)	129, 322, 665, 682
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	414
NsiI	ATGCAT	1 cut(s)	382
PctI	GAATGC	2 cut(s)	502, 629
PfeI	GAWTC	3 cut(s)	8, 47, 466
PfoI	TCCNGGA	1 cut(s)	72
PleI	GAGTC	2 cut(s)	476, 580
PpsI	GAGTC	2 cut(s)	476, 580
Psp6I	CCWGG	2 cut(s)	14, 72
PspGI	CCWGG	2 cut(s)	14, 72
PspN4I	GGNNCC	1 cut(s)	150
PsuI	RGATCY	3 cut(s)	148, 250, 574
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
SaqAI	TTAA	5 cut(s)	62, 393, 429, 579, 689
Sau3AI	GATC	8 cut(s)	35, 66, 76, 148, 239, 250, 326, 574
SchI	GAGTC	2 cut(s)	476, 580
ScrFI	CCNGG	2 cut(s)	16, 74
SetI	ASST	5 cut(s)	298, 399, 442, 462, 628
SfaNI	GCATC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	5 cut(s)	59, 282, 690, 696, 709
SspMI	CTAG	2 cut(s)	425, 657
StyD4I	CCNGG	2 cut(s)	14, 72
TaqI	TCGA	1 cut(s)	79
TasI	AATT	5 cut(s)	59, 282, 690, 696, 709
TatI	WGTACW	1 cut(s)	569
TfiI	GAWTC	3 cut(s)	8, 47, 466
Tru1I	TTAA	5 cut(s)	62, 393, 429, 579, 689
Tru9I	TTAA	5 cut(s)	62, 393, 429, 579, 689
TseFI	GTSAC	1 cut(s)	414
Tsp45I	GTSAC	1 cut(s)	414
TspDTI	ATGAA	5 cut(s)	39, 203, 222, 518, 693
TspGWI	ACGGA	2 cut(s)	20, 263
XapI	RAATTY	1 cut(s)	282
XspI	CTAG	2 cut(s)	425, 657
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.