RLG00000013167

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010152
Physical Location & Seq
Reverse (-)
26951349 .. 26952802
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013167

Sequence Viewer

Length: 1365 bp
ATGGGAAGTCTTGGCAGTGCACTGCTATCTTTTTCAGTAGCACTGCCATGGCGCCATCCGCCCCCACAGTCAAAATCCTCACTCCAAATCCAATGCGCTCTGACCAAACAAGGGCAACGCTTCCTGACCAAGCTCGCTGCCAATGCCGGCGACCCATCCGTCGCCAACAAATTGATCTCCAAGTTCCTGTCGAGCTCTCCCAAGTCCACTGCTCTCACCACTCTCTCTTATCTTCTCTCTCCTCACACCACCCACCCTCACCTCTCTTCCCTCGCCCTCCCCTTGTACTCTAAAATCACAGAGGCGTCTTGGTTTGAGTGGAATCCGAAGATGGTAGCTGCCCTTGTTGCGTTGCTTGATAAACAAGGACTACACAGTCAATCAGAAGCTTTAATCTCCGAGACCGTTTCGAAATTAGGCACCAGAGAACGAGAGCTTGCTCAGTTTCATTGCCAATTGGTGGAGTCACACTCTAAGTTAAGCTCAAAGCGTGGGTTTGATAATGCTTACGCTTATCTCTATCAGCTTCTTCAGAATTCTAACTCTATTTATGTAAAACGACGAGCTTTTGAATCGATGGTTGGTGGTTTATGCGCCATGGATAGGCCTCGTGAAGCGGACGATTTGATTGAGGAGATGAGAGGTAAGGGACTGAAGGCGTCGGTTTTCGAGTTCAGGTCTGTGGTTTATGGCTATGGAAGGTTGGGACTGTTTGAAGAAATGCTGAAGATTGTGGACCAAATGGAGAAGCAGGGGTTTGGTGATGATACTATTTGCTCTAATATGGTTCTTTCATCATATGGAGCTCATAATGAGCTGGCTGCGATGGCAATGTGGCTCCGAAAAATGAAAGAATCGAGTGTTCCTTTCTCGATTAGGACTTACAATTCGGTGTTGAATTCGTGCCCTACGATTATGGCAATGCTGCAGGAACCGAAAGCTGTTCCGTGTTCAGTTGAAGAACTGACTGGGATTTTGGATGGTGATGAGGCTTTGGTGGTTAAAGAGTTGGTTGGATCGGCAGTTTTGGATGAGGCGATGATGTGGGATTCTACAGAGGCCAAGTTGGATTTGCATGGCATGCATTTGGGTTCAGCTTACTTGGTAATGCTAGAGTGGTGTGAGGCAATGCGATACAGGTTTGACTGTGGGGAATATGTGGTTCCAGCAGAGGTTGTTGTTGTTTGCGGGTTGGGAAAGCATAGCAGTGTTAGAGGTGAATCCCCGGTTAAAGATCTGGTTAAAGAGATGATGCGTCGAATGAAAAGTCCGATGAGAATCGATAGGACGAACGTGGGGTGTTTCATTGCCAAGGGGAGAGCTGTGAAGGACTGGTTGTGTAAAACTGTTGGACAGGATAGATAG

Protein Analysis

455

Amino Acids

50.39

Weight (kDa)

8.19

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17033 AT2G17033 AT2G17033 AT2G17033
fragaria_vesca FvH4_2g15760
malus_domestica MD10G1129400.v1.1
prunus_persica Prupe.8G170200_v2.0.a1
pyrus_communis pycom05g12240
rosa_chinensis RchiOBHm_Chr6g0279111
rosa_laevigata RLG00000013167
rosa_multiflora Rmu_co8289613.1_g000001 Rmu_sc0002080.1_g000001 Rmu_sc0014203.1_g000023
rosa_roxburghii Rroxscaffold_7G00189120
rosa_rugosa Rorug06G0122300
rosa_samantha Rh6AG231000 Rh6BG235900 Rh6CG238000 Rh6DG229600
rosa_wichuraiana Rw0G019940 Rw6G020230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 158, 375
AccB1I GGYRCC 2 cut(s) 51, 419
AccB7I CCANNNNNTGG 1 cut(s) 460
AciI CCGC 3 cut(s) 59, 617, 1188
AclWI GGATC 1 cut(s) 1024
AcsI RAATTY 2 cut(s) 535, 898
AcuI CTGAAG 3 cut(s) 515, 674, 746
AcyI GRCGYC 3 cut(s) 52, 305, 659
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 111, 460, 603
AgsI TTSAA 4 cut(s) 572, 716, 898, 959
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
Alw21I GWGCWC 3 cut(s) 22, 197, 808
Alw26I GTCTC 1 cut(s) 395
Alw44I GTGCAC 1 cut(s) 18
AlwI GGATC 1 cut(s) 1024
AoxI GGCC 2 cut(s) 605, 1059
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 137, 338, 821, 925
ApoI RAATTY 2 cut(s) 535, 898
ArsI GACNNNNNNTTYG 6 cut(s) 871, 903, 958, 990, 1252, 1284
AspLEI GCGC 3 cut(s) 54, 98, 596
AspS9I GGNCC 1 cut(s) 736
AsuC2I CCSGG 1 cut(s) 1226
AsuHPI GGTGA 5 cut(s) 208, 251, 773, 995, 1229
AsuII TTCGAA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 736
BaeGI GKGCMC 2 cut(s) 22, 908
BanI GGYRCC 2 cut(s) 51, 419
BanII GRGCYC 2 cut(s) 197, 808
BauI CACGAG 1 cut(s) 609
Bbv12I GWGCWC 3 cut(s) 22, 197, 808
BbvI GCAGC 4 cut(s) 124, 325, 808, 912
BccI CCATC 6 cut(s) 63, 163, 325, 571, 820, 974
BcnI CCSGG 1 cut(s) 1226
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 1112
BfmI CTRYAG 2 cut(s) 926, 1053
BfoI RGCGCY 1 cut(s) 55
BglII AGATCT 1 cut(s) 1234
BisI GCNGC 4 cut(s) 138, 339, 822, 926
BlsI GCNGC 4 cut(s) 139, 340, 823, 927
Bme1390I CCNGG 1 cut(s) 1226
Bme18I GGWCC 1 cut(s) 736
BmgT120I GGNCC 1 cut(s) 736
BmiI GGNNCC 5 cut(s) 53, 421, 839, 933, 1164
BmrFI CCNGG 1 cut(s) 1226
BmrI ACTGGG 1 cut(s) 978
BmsI GCATC 1 cut(s) 1242
BmuI ACTGGG 1 cut(s) 978
BplI GAGNNNNNCTC 2 cut(s) 455, 487
Bpu14I TTCGAA 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 1226
Bsa29I ATCGAT 2 cut(s) 575, 1281
BsaBI GATNNNNATC 1 cut(s) 1277
BsaHI GRCGYC 3 cut(s) 52, 305, 659
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 4 cut(s) 47, 597, 1224, 1311
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 460, 603
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 973, 1337
Bse3DI GCAATG 5 cut(s) 448, 837, 927, 1134, 1305
Bse8I GATNNNNATC 1 cut(s) 1277
BseCI ATCGAT 2 cut(s) 575, 1281
BseDI CCNNGG 4 cut(s) 47, 597, 1224, 1311
BseGI GGATG 4 cut(s) 55, 155, 985, 1036
BseJI GATNNNNATC 1 cut(s) 1277
BseLI CCNNNNNNNGG 3 cut(s) 111, 460, 603
BseMI GCAATG 5 cut(s) 448, 837, 927, 1134, 1305
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 2 cut(s) 973, 1337
BseRI GAGGAG 2 cut(s) 231, 647
BseSI GKGCMC 2 cut(s) 22, 908
BseXI GCAGC 4 cut(s) 124, 325, 808, 912
BshFI GGCC 2 cut(s) 607, 1061
BshNI GGYRCC 2 cut(s) 51, 419
BshVI ATCGAT 2 cut(s) 575, 1281
BsiHKAI GWGCWC 3 cut(s) 22, 197, 808
BsiSI CCGG 2 cut(s) 147, 1226
BslFI GGGAC 2 cut(s) 663, 720
BslI CCNNNNNNNGG 3 cut(s) 111, 460, 603
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 663, 720
BsnI GGCC 2 cut(s) 607, 1061
Bso31I GGTCTC 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 4 cut(s) 22, 197, 808, 908
Bsp143I GATC 3 cut(s) 174, 1016, 1234
Bsp19I CCATGG 2 cut(s) 47, 597
BspACI CCGC 3 cut(s) 59, 617, 1188
BspANI GGCC 2 cut(s) 607, 1061
BspCNI CTCAG 1 cut(s) 454
BspDI ATCGAT 2 cut(s) 575, 1281
BspLI GGNNCC 5 cut(s) 53, 421, 839, 933, 1164
BspMAI CTGCAG 1 cut(s) 930
BspPI GGATC 1 cut(s) 1024
BspT104I TTCGAA 1 cut(s) 410
BspT107I GGYRCC 2 cut(s) 51, 419
BspTNI GGTCTC 1 cut(s) 395
BsrDI GCAATG 5 cut(s) 448, 837, 927, 1134, 1305
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 2 cut(s) 973, 1337
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 4 cut(s) 47, 597, 1224, 1311
BssMI GATC 3 cut(s) 174, 1016, 1234
BssNI GRCGYC 3 cut(s) 52, 305, 659
BssSI CACGAG 1 cut(s) 609
BssT1I CCWWGG 3 cut(s) 47, 597, 1311
Bst2BI CACGAG 1 cut(s) 609
Bst4CI ACNGT 6 cut(s) 69, 377, 406, 711, 1148, 1348
Bst6I CTCTTC 1 cut(s) 271
BstACI GRCGYC 3 cut(s) 52, 305, 659
BstAPI GCANNNNNTGC 1 cut(s) 1081
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 5 cut(s) 135, 148, 438, 819, 1082
BstDEI CTNAG 2 cut(s) 441, 474
BstDSI CCRYGG 2 cut(s) 47, 597
BstF5I GGATG 4 cut(s) 55, 155, 985, 1036
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 3 cut(s) 54, 98, 596
BstKTI GATC 3 cut(s) 177, 1019, 1237
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 3 cut(s) 174, 1016, 1234
BstMWI GCNNNNNNNGC 5 cut(s) 58, 143, 347, 827, 1081
BstNSI RCATGY 1 cut(s) 1084
BstSCI CCNGG 1 cut(s) 1224
BstSFI CTRYAG 2 cut(s) 926, 1053
BstSLI GKGCMC 2 cut(s) 22, 908
BstV1I GCAGC 4 cut(s) 124, 325, 808, 912
BstX2I RGATCY 1 cut(s) 1234
BstYI RGATCY 1 cut(s) 1234
Bsu15I ATCGAT 2 cut(s) 575, 1281
BsuRI GGCC 2 cut(s) 607, 1061
BsuTUI ATCGAT 2 cut(s) 575, 1281
BtgI CCRYGG 2 cut(s) 47, 597
BtgZI GCGATG 2 cut(s) 839, 1052
BtsCI GGATG 4 cut(s) 55, 155, 985, 1036
BtsI GCAGTG 5 cut(s) 20, 22, 41, 207, 1213
BtsIMutI CAGTG 5 cut(s) 20, 22, 41, 207, 1213
Cac8I GCNNGC 5 cut(s) 135, 148, 438, 819, 1082
CfoI GCGC 3 cut(s) 54, 98, 596
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 736
ClaI ATCGAT 2 cut(s) 575, 1281
CseI GACGC 3 cut(s) 294, 648, 1244
Csp6I GTAC 1 cut(s) 286
CviAII CATG 4 cut(s) 48, 598, 1076, 1081
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 441, 474
DinI GGCGCC 1 cut(s) 53
DpnI GATC 3 cut(s) 176, 1018, 1236
DpnII GATC 3 cut(s) 174, 1016, 1234
DrdI GACNNNNNNGTC 2 cut(s) 158, 375
DseDI GACNNNNNNGTC 2 cut(s) 158, 375
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 2 cut(s) 195, 806
Eco130I CCWWGG 3 cut(s) 47, 597, 1311
Eco147I AGGCCT 1 cut(s) 607
Eco24I GRGCYC 2 cut(s) 197, 808
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 736
Eco53kI GAGCTC 2 cut(s) 195, 806
Eco57I CTGAAG 3 cut(s) 515, 674, 746
EcoICRI GAGCTC 2 cut(s) 195, 806
EcoRI GAATTC 2 cut(s) 535, 898
EcoT14I CCWWGG 3 cut(s) 47, 597, 1311
EcoT22I ATGCAT 1 cut(s) 1086
EcoT38I GRGCYC 2 cut(s) 197, 808
EgeI GGCGCC 1 cut(s) 53
EheI GGCGCC 1 cut(s) 53
ErhI CCWWGG 3 cut(s) 47, 597, 1311
FaeI CATG 4 cut(s) 51, 601, 1079, 1084
FaqI GGGAC 2 cut(s) 663, 720
FatI CATG 4 cut(s) 47, 597, 1075, 1080
FauI CCCGC 1 cut(s) 1181
FauNDI CATATG 1 cut(s) 799
Fnu4HI GCNGC 4 cut(s) 138, 339, 822, 926
FokI GGATG 4 cut(s) 42, 142, 992, 1043
FriOI GRGCYC 2 cut(s) 197, 808
Fsp4HI GCNGC 4 cut(s) 138, 339, 822, 926
FspBI CTAG 1 cut(s) 1112
GlaI GCGC 3 cut(s) 53, 97, 595
GluI GCNGC 4 cut(s) 138, 339, 822, 926
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 2 cut(s) 607, 1061
HapII CCGG 2 cut(s) 147, 1226
HgaI GACGC 3 cut(s) 294, 648, 1244
HhaI GCGC 3 cut(s) 54, 98, 596
Hin1I GRCGYC 3 cut(s) 52, 305, 659
Hin1II CATG 4 cut(s) 51, 601, 1079, 1084
Hin6I GCGC 3 cut(s) 52, 96, 594
HinP1I GCGC 3 cut(s) 52, 96, 594
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 7 cut(s) 322, 464, 572, 854, 1049, 1220, 1278
HpaII CCGG 2 cut(s) 147, 1226
HphI GGTGA 5 cut(s) 208, 251, 773, 995, 1229
Hpy166II GTNNAC 3 cut(s) 20, 207, 736
Hpy188I TCNGA 7 cut(s) 102, 327, 385, 400, 534, 842, 1272
Hpy188III TCNNGA 3 cut(s) 124, 611, 871
Hpy8I GTNNAC 3 cut(s) 20, 207, 736
Hpy99I CGWCG 4 cut(s) 164, 564, 664, 1260
HpyAV CCTTC 3 cut(s) 649, 693, 1321
HpyCH4III ACNGT 6 cut(s) 69, 377, 406, 711, 1148, 1348
HpyCH4IV ACGT 1 cut(s) 1293
HpyCH4V TGCA 4 cut(s) 20, 928, 1075, 1084
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 143, 347, 827, 1081
HpyF3I CTNAG 2 cut(s) 441, 474
HpySE526I ACGT 1 cut(s) 1293
Hsp92I GRCGYC 3 cut(s) 52, 305, 659
Hsp92II CATG 4 cut(s) 51, 601, 1079, 1084
HspAI GCGC 3 cut(s) 52, 96, 594
KasI GGCGCC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 3 cut(s) 174, 1016, 1234
LmnI GCTCC 2 cut(s) 803, 843
Lsp1109I GCAGC 4 cut(s) 124, 325, 808, 912
LweI GCATC 1 cut(s) 1242
MaeI CTAG 1 cut(s) 1112
MaeII ACGT 1 cut(s) 1293
MaeIII GTNAC 1 cut(s) 465
MalI GATC 3 cut(s) 176, 1018, 1236
MboI GATC 3 cut(s) 174, 1016, 1234
MboII GAAGA 7 cut(s) 224, 258, 340, 521, 728, 739, 971
MfeI CAATTG 1 cut(s) 455
MflI RGATCY 1 cut(s) 1234
MhlI GDGCHC 4 cut(s) 22, 197, 808, 908
MluCI AATT 6 cut(s) 170, 413, 455, 535, 886, 898
Mly113I GGCGCC 1 cut(s) 52
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 3 cut(s) 994, 1047, 1330
Mph1103I ATGCAT 1 cut(s) 1086
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 5 cut(s) 392, 479, 1002, 1230, 1242
MslI CAYNNNNRTG 2 cut(s) 46, 1206
MspI CCGG 2 cut(s) 147, 1226
MspR9I CCNGG 1 cut(s) 1226
MunI CAATTG 1 cut(s) 455
MwoI GCNNNNNNNGC 5 cut(s) 58, 143, 347, 827, 1081
NaeI GCCGGC 1 cut(s) 148
NarI GGCGCC 1 cut(s) 52
NciI CCSGG 1 cut(s) 1226
NcoI CCATGG 2 cut(s) 47, 597
NdeI CATATG 1 cut(s) 799
NdeII GATC 3 cut(s) 174, 1016, 1234
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 4 cut(s) 51, 601, 1079, 1084
NlaIV GGNNCC 5 cut(s) 53, 421, 839, 933, 1164
NmuCI GTSAC 1 cut(s) 465
NsiI ATGCAT 1 cut(s) 1086
NspI RCATGY 1 cut(s) 1084
NspV TTCGAA 1 cut(s) 410
PaeI GCATGC 1 cut(s) 1084
PceI AGGCCT 1 cut(s) 607
PcsI WCGNNNNNNNCGW 1 cut(s) 908
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 6 cut(s) 322, 572, 854, 1049, 1220, 1278
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 4 cut(s) 139, 340, 823, 927
PleI GAGTC 1 cut(s) 472
PluTI GGCGCC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 472
Psp124BI GAGCTC 2 cut(s) 197, 808
PspN4I GGNNCC 5 cut(s) 53, 421, 839, 933, 1164
PspPI GGNCC 1 cut(s) 736
PstI CTGCAG 1 cut(s) 930
PsuI RGATCY 1 cut(s) 1234
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 2 cut(s) 46, 1206
SacI GAGCTC 2 cut(s) 197, 808
SaqAI TTAA 5 cut(s) 392, 479, 1002, 1230, 1242
SatI GCNGC 4 cut(s) 138, 339, 822, 926
Sau3AI GATC 3 cut(s) 174, 1016, 1234
Sau96I GGNCC 1 cut(s) 736
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 1 cut(s) 1226
SduI GDGCHC 4 cut(s) 22, 197, 808, 908
SfaNI GCATC 1 cut(s) 1242
SfcI CTRYAG 2 cut(s) 926, 1053
SfoI GGCGCC 1 cut(s) 53
SfuI TTCGAA 1 cut(s) 410
SinI GGWCC 1 cut(s) 736
SmiMI CAYNNNNRTG 2 cut(s) 46, 1206
SphI GCATGC 1 cut(s) 1084
Sse9I AATT 6 cut(s) 170, 413, 455, 535, 886, 898
SseBI AGGCCT 1 cut(s) 607
SsiI CCGC 3 cut(s) 59, 617, 1188
SspDI GGCGCC 1 cut(s) 51
SspMI CTAG 1 cut(s) 1112
SstI GAGCTC 2 cut(s) 197, 808
StuI AGGCCT 1 cut(s) 607
StyD4I CCNGG 1 cut(s) 1224
StyI CCWWGG 3 cut(s) 47, 597, 1311
TaaI ACNGT 6 cut(s) 69, 377, 406, 711, 1148, 1348
TaiI ACGT 1 cut(s) 1296
TaqI TCGA 8 cut(s) 191, 410, 575, 669, 857, 872, 1258, 1281
TasI AATT 6 cut(s) 170, 413, 455, 535, 886, 898
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 6 cut(s) 322, 572, 854, 1049, 1220, 1278
Tru1I TTAA 5 cut(s) 392, 479, 1002, 1230, 1242
Tru9I TTAA 5 cut(s) 392, 479, 1002, 1230, 1242
TscAI CASTG 5 cut(s) 22, 27, 48, 214, 1213
TseFI GTSAC 1 cut(s) 465
TseI GCWGC 4 cut(s) 137, 338, 821, 925
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 5 cut(s) 437, 783, 863, 1277, 1294
TspGWI ACGGA 2 cut(s) 148, 936
TspRI CASTG 5 cut(s) 22, 27, 48, 214, 1213
Van91I CCANNNNNTGG 1 cut(s) 460
VneI GTGCAC 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 736
XapI RAATTY 2 cut(s) 535, 898
XceI RCATGY 1 cut(s) 1084
XspI CTAG 1 cut(s) 1112
Zsp2I ATGCAT 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.