Rw0G019940

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00897
OG0010152
Physical Location & Seq
Forward (+)
26421 .. 28147
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019940.1

Sequence Viewer

Length: 1368 bp
ATGACCTTCCATCACATCTCCAAAATGGGAAGTCTCGGCAGTGCACGGCTATCTTTTTCAGTAGCACTGCCATGGCGCCATCCGCCCCCACAGTCAAAATCCTCACTCCAAATCCAATGCGCTCTGACCAAACAAGGCCAACGCTTTCTGACCAAGCTCGCAGCCAATGCAAGCGACCCTTCCGTGGCTAACAAATTGATCTCCAAGTTCCTGTCGAGCTCTCCTAAGTCCACTGCTCTCACCACTCTCTCTTATCTTCTCTCTCCTCACACCACCCACCCTCACCTCTCTTCCCTCGCCCTCCCTTTGTACTACAAAATCACAGAGGCGTCTTGGTTTGAGTGGAATCCAAAGTTGGTAGCTGCCCTGGTTGCGTTGCTTGATAAACAAGGACTACACAGCCAATCAGAAGCTTTAATCTCCGAGACCGTATCGAAATTAGGCACCAGAGAACGAGAGCTTGCTCAGTTTCATGGCCAATTGGTGGAGTCGCACTCTAAGTTAAGCTCAAAGCGTGGGTTTGATAGGGCCTATACTTACCTCTATCAGCTTCTTCAGAATTCTAGCTCTGTTTATGTAAAACGCCGAGCGTTTGAATCGATGGTCGGTGGTTTATGCGCCATGGATAGGCCTCGTGAAGCGGACGATTTGATTGAGAAGATGAGAGTTAAGGGACTGAAGGCGTCGGTTTTCGAGTTCAGGTCTGTGGTTTATGGCTATGGAAGGTTGGGAATGTTTGAAGAAATGCTGAAGATTGTGGACCAAATGGAGAAGCAGGGGTTTGGTGATGATACCATTTGCTCTAACATGGTTCTTTCATCATATGGAGCTCATAATGAGCTGGCTGCGATGGCAATGTGGCTTCGAAAAATGAAAGAATCGAGTGTTCCTTTCTCGATTAGGACTTACAATTCGGTGTTGAATTCGTGCCCTACGATTATGGCAATGCTGCAGGAACCGAAAGCTGTTCCGTGTTCAGTTGAAGAACTGACTGGAATTTTGGATGGTGATGAGGCTTTGGTGGTTAAAGAGTTGGTTGGATCGGCAGTTGTGGATGAGGCGATGGTGTGGGATTCTACAGAGGCCAAGTTGGATTTGCATGGCATGCATTTGGGTTCAGCTTACTTGGTAATGCTAGAATGGTTTGAGGCAATGCGATACAGGTTTGACTGTGGGGAGTATGTGGTTCCAGCAGAGGTTGTCATTGTTTGCGGATTGGGAAAGCATAGCAGTGTTAGAGGTGAATCCCCGGTTAAAGATCTGGTTAAAGAGATGATGCGTCGAATGGAAAGTCCGATGAGAATTGATAGGAAGAACGTGGGGTGTTTCATTGCCAAGGGAAGAGCTGTGAAGGACTGGTTATGCTAA

Protein Analysis

455

Amino Acids

50.8

Weight (kDa)

8.69

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17033 AT2G17033 AT2G17033 AT2G17033
fragaria_vesca FvH4_2g15760
malus_domestica MD10G1129400.v1.1
prunus_persica Prupe.8G170200_v2.0.a1
pyrus_communis pycom05g12240
rosa_chinensis RchiOBHm_Chr6g0279111
rosa_laevigata RLG00000013167
rosa_multiflora Rmu_co8289613.1_g000001 Rmu_sc0002080.1_g000001 Rmu_sc0014203.1_g000023
rosa_roxburghii Rroxscaffold_7G00189120
rosa_rugosa Rorug06G0122300
rosa_samantha Rh6AG231000 Rh6BG235900 Rh6CG238000 Rh6DG229600
rosa_wichuraiana Rw0G019940 Rw6G020230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 75, 443
AccB7I CCANNNNNTGG 1 cut(s) 484
AciI CCGC 3 cut(s) 83, 641, 1212
AclWI GGATC 1 cut(s) 1048
AcoI YGGCCR 1 cut(s) 475
AcsI RAATTY 3 cut(s) 559, 922, 996
AcuI CTGAAG 3 cut(s) 539, 698, 770
AcyI GRCGYC 3 cut(s) 76, 329, 683
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 3 cut(s) 184, 484, 627
AgsI TTSAA 4 cut(s) 596, 740, 922, 983
AjnI CCWGG 1 cut(s) 366
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
Alw21I GWGCWC 3 cut(s) 46, 221, 832
Alw26I GTCTC 2 cut(s) 38, 419
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 1048
AoxI GGCC 5 cut(s) 136, 475, 528, 629, 1083
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 4 cut(s) 161, 362, 845, 949
ApoI RAATTY 3 cut(s) 559, 922, 996
ArsI GACNNNNNNTTYG 6 cut(s) 895, 927, 982, 1014, 1276, 1308
AspLEI GCGC 3 cut(s) 78, 122, 620
AspS9I GGNCC 2 cut(s) 528, 760
AsuC2I CCSGG 1 cut(s) 1250
AsuHPI GGTGA 5 cut(s) 232, 275, 797, 1019, 1253
AsuII TTCGAA 1 cut(s) 865
AvaII GGWCC 1 cut(s) 760
BaeGI GKGCMC 2 cut(s) 46, 932
BalI TGGCCA 1 cut(s) 477
BanI GGYRCC 2 cut(s) 75, 443
BanII GRGCYC 2 cut(s) 221, 832
BauI CACGAG 1 cut(s) 633
Bbv12I GWGCWC 3 cut(s) 46, 221, 832
BbvI GCAGC 4 cut(s) 173, 349, 832, 936
BccI CCATC 6 cut(s) 18, 87, 595, 844, 998, 1057
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 368
BcnI CCSGG 1 cut(s) 1250
BcoDI GTCTC 2 cut(s) 38, 419
BfaI CTAG 2 cut(s) 564, 1136
BfmI CTRYAG 2 cut(s) 950, 1077
BfoI RGCGCY 1 cut(s) 79
BglII AGATCT 1 cut(s) 1258
BisI GCNGC 4 cut(s) 162, 363, 846, 950
BlsI GCNGC 4 cut(s) 163, 364, 847, 951
Bme1390I CCNGG 2 cut(s) 368, 1250
Bme18I GGWCC 1 cut(s) 760
BmgT120I GGNCC 2 cut(s) 528, 760
BmiI GGNNCC 4 cut(s) 77, 445, 957, 1188
BmrFI CCNGG 2 cut(s) 368, 1250
BmsI GCATC 1 cut(s) 1266
BplI GAGNNNNNCTC 2 cut(s) 479, 511
Bpu14I TTCGAA 1 cut(s) 865
BpuMI CCSGG 1 cut(s) 1250
Bsa29I ATCGAT 1 cut(s) 599
BsaHI GRCGYC 3 cut(s) 76, 329, 683
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 6 cut(s) 71, 183, 366, 621, 1248, 1335
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 484, 627
Bse1I ACTGG 2 cut(s) 997, 1361
Bse3DI GCAATG 4 cut(s) 861, 951, 1158, 1329
BseBI CCWGG 1 cut(s) 368
BseCI ATCGAT 1 cut(s) 599
BseDI CCNNGG 6 cut(s) 71, 183, 366, 621, 1248, 1335
BseGI GGATG 3 cut(s) 79, 1009, 1060
BseLI CCNNNNNNNGG 3 cut(s) 184, 484, 627
BseMI GCAATG 4 cut(s) 861, 951, 1158, 1329
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 2 cut(s) 997, 1361
BseRI GAGGAG 1 cut(s) 255
BseSI GKGCMC 2 cut(s) 46, 932
BseXI GCAGC 4 cut(s) 173, 349, 832, 936
BshFI GGCC 5 cut(s) 138, 477, 530, 631, 1085
BshNI GGYRCC 2 cut(s) 75, 443
BshVI ATCGAT 1 cut(s) 599
BsiHKAI GWGCWC 3 cut(s) 46, 221, 832
BsiSI CCGG 1 cut(s) 1250
BslFI GGGAC 1 cut(s) 687
BslI CCNNNNNNNGG 3 cut(s) 184, 484, 627
BsmAI GTCTC 2 cut(s) 38, 419
BsmFI GGGAC 1 cut(s) 687
BsnI GGCC 5 cut(s) 138, 477, 530, 631, 1085
Bso31I GGTCTC 1 cut(s) 419
Bsp119I TTCGAA 1 cut(s) 865
Bsp1286I GDGCHC 4 cut(s) 46, 221, 832, 932
Bsp143I GATC 3 cut(s) 198, 1040, 1258
Bsp19I CCATGG 2 cut(s) 71, 621
BspACI CCGC 3 cut(s) 83, 641, 1212
BspANI GGCC 5 cut(s) 138, 477, 530, 631, 1085
BspCNI CTCAG 1 cut(s) 478
BspDI ATCGAT 1 cut(s) 599
BspLI GGNNCC 4 cut(s) 77, 445, 957, 1188
BspMAI CTGCAG 1 cut(s) 954
BspPI GGATC 1 cut(s) 1048
BspQI GCTCTTC 1 cut(s) 1336
BspT104I TTCGAA 1 cut(s) 865
BspT107I GGYRCC 2 cut(s) 75, 443
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 4 cut(s) 861, 951, 1158, 1329
BsrI ACTGG 2 cut(s) 997, 1361
BssECI CCNNGG 6 cut(s) 71, 183, 366, 621, 1248, 1335
BssMI GATC 3 cut(s) 198, 1040, 1258
BssNI GRCGYC 3 cut(s) 76, 329, 683
BssSI CACGAG 1 cut(s) 633
BssT1I CCWWGG 3 cut(s) 71, 621, 1335
Bst2BI CACGAG 1 cut(s) 633
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 93, 430, 1172
Bst6I CTCTTC 2 cut(s) 295, 1336
BstACI GRCGYC 3 cut(s) 76, 329, 683
BstAPI GCANNNNNTGC 2 cut(s) 167, 1105
BstBI TTCGAA 1 cut(s) 865
BstC8I GCNNGC 5 cut(s) 159, 172, 462, 843, 1106
BstDEI CTNAG 3 cut(s) 225, 465, 498
BstDSI CCRYGG 3 cut(s) 71, 183, 621
BstF5I GGATG 3 cut(s) 79, 1009, 1060
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 3 cut(s) 78, 122, 620
BstKTI GATC 3 cut(s) 201, 1043, 1261
BstMAI GTCTC 2 cut(s) 38, 419
BstMBI GATC 3 cut(s) 198, 1040, 1258
BstMWI GCNNNNNNNGC 5 cut(s) 82, 167, 371, 851, 1105
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 1108
BstSCI CCNGG 2 cut(s) 366, 1248
BstSFI CTRYAG 2 cut(s) 950, 1077
BstSLI GKGCMC 2 cut(s) 46, 932
BstV1I GCAGC 4 cut(s) 173, 349, 832, 936
BstX2I RGATCY 1 cut(s) 1258
BstYI RGATCY 1 cut(s) 1258
Bsu15I ATCGAT 1 cut(s) 599
BsuRI GGCC 5 cut(s) 138, 477, 530, 631, 1085
BsuTUI ATCGAT 1 cut(s) 599
BtgI CCRYGG 3 cut(s) 71, 183, 621
BtgZI GCGATG 2 cut(s) 863, 1076
BtsCI GGATG 3 cut(s) 79, 1009, 1060
BtsI GCAGTG 4 cut(s) 46, 65, 231, 1237
BtsIMutI CAGTG 4 cut(s) 46, 65, 231, 1237
Cac8I GCNNGC 5 cut(s) 159, 172, 462, 843, 1106
CfoI GCGC 3 cut(s) 78, 122, 620
Cfr13I GGNCC 2 cut(s) 528, 760
ClaI ATCGAT 1 cut(s) 599
CseI GACGC 3 cut(s) 318, 672, 1268
Csp6I GTAC 1 cut(s) 310
CviAII CATG 6 cut(s) 72, 473, 622, 808, 1100, 1105
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 225, 465, 498
DinI GGCGCC 1 cut(s) 77
DpnI GATC 3 cut(s) 200, 1042, 1260
DpnII GATC 3 cut(s) 198, 1040, 1258
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 295, 1336
EarI CTCTTC 2 cut(s) 295, 1336
EciI GGCGGA 1 cut(s) 72
Ecl136II GAGCTC 2 cut(s) 219, 830
Eco130I CCWWGG 3 cut(s) 71, 621, 1335
Eco147I AGGCCT 1 cut(s) 631
Eco24I GRGCYC 2 cut(s) 221, 832
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 760
Eco53kI GAGCTC 2 cut(s) 219, 830
Eco57I CTGAAG 3 cut(s) 539, 698, 770
EcoICRI GAGCTC 2 cut(s) 219, 830
EcoO109I RGGNCCY 1 cut(s) 528
EcoRI GAATTC 2 cut(s) 559, 922
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 3 cut(s) 71, 621, 1335
EcoT22I ATGCAT 1 cut(s) 1110
EcoT38I GRGCYC 2 cut(s) 221, 832
EgeI GGCGCC 1 cut(s) 77
EheI GGCGCC 1 cut(s) 77
ErhI CCWWGG 3 cut(s) 71, 621, 1335
FaeI CATG 6 cut(s) 75, 476, 625, 811, 1103, 1108
FalI AAGNNNNNCTT 2 cut(s) 163, 195
FaqI GGGAC 1 cut(s) 687
FatI CATG 6 cut(s) 71, 472, 621, 807, 1099, 1104
FauNDI CATATG 1 cut(s) 823
Fnu4HI GCNGC 4 cut(s) 162, 363, 846, 950
FokI GGATG 3 cut(s) 66, 1016, 1067
FriOI GRGCYC 2 cut(s) 221, 832
Fsp4HI GCNGC 4 cut(s) 162, 363, 846, 950
FspBI CTAG 2 cut(s) 564, 1136
GlaI GCGC 3 cut(s) 77, 121, 619
GluI GCNGC 4 cut(s) 162, 363, 846, 950
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 5 cut(s) 138, 477, 530, 631, 1085
HapII CCGG 1 cut(s) 1250
HgaI GACGC 3 cut(s) 318, 672, 1268
HhaI GCGC 3 cut(s) 78, 122, 620
Hin1I GRCGYC 3 cut(s) 76, 329, 683
Hin1II CATG 6 cut(s) 75, 476, 625, 811, 1103, 1108
Hin6I GCGC 3 cut(s) 76, 120, 618
HinP1I GCGC 3 cut(s) 76, 120, 618
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 6 cut(s) 346, 488, 596, 878, 1073, 1244
HpaII CCGG 1 cut(s) 1250
HphI GGTGA 5 cut(s) 232, 275, 797, 1019, 1253
Hpy166II GTNNAC 3 cut(s) 44, 231, 760
Hpy188I TCNGA 6 cut(s) 126, 150, 409, 424, 558, 1296
Hpy188III TCNNGA 2 cut(s) 635, 895
Hpy8I GTNNAC 3 cut(s) 44, 231, 760
Hpy99I CGWCG 2 cut(s) 688, 1284
HpyAV CCTTC 5 cut(s) 16, 189, 673, 717, 1345
HpyCH4III ACNGT 3 cut(s) 93, 430, 1172
HpyCH4IV ACGT 1 cut(s) 1317
HpyCH4V TGCA 5 cut(s) 44, 170, 952, 1099, 1108
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 167, 371, 851, 1105
HpyF3I CTNAG 3 cut(s) 225, 465, 498
HpySE526I ACGT 1 cut(s) 1317
Hsp92I GRCGYC 3 cut(s) 76, 329, 683
Hsp92II CATG 6 cut(s) 75, 476, 625, 811, 1103, 1108
HspAI GCGC 3 cut(s) 76, 120, 618
KasI GGCGCC 1 cut(s) 75
Kzo9I GATC 3 cut(s) 198, 1040, 1258
LguI GCTCTTC 1 cut(s) 1336
LmnI GCTCC 1 cut(s) 827
Lsp1109I GCAGC 4 cut(s) 173, 349, 832, 936
LweI GCATC 1 cut(s) 1266
MaeI CTAG 2 cut(s) 564, 1136
MaeII ACGT 1 cut(s) 1317
MalI GATC 3 cut(s) 200, 1042, 1260
MboI GATC 3 cut(s) 198, 1040, 1258
MboII GAAGA 9 cut(s) 248, 282, 545, 670, 752, 763, 995, 1324, 1353
MfeI CAATTG 1 cut(s) 479
MflI RGATCY 1 cut(s) 1258
MhlI GDGCHC 4 cut(s) 46, 221, 832, 932
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 8 cut(s) 194, 437, 479, 559, 910, 922, 996, 1302
MluNI TGGCCA 1 cut(s) 477
Mly113I GGCGCC 1 cut(s) 76
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 2 cut(s) 1018, 1071
Mox20I TGGCCA 1 cut(s) 477
Mph1103I ATGCAT 1 cut(s) 1110
MscI TGGCCA 1 cut(s) 477
MseI TTAA 6 cut(s) 416, 503, 669, 1026, 1254, 1266
MslI CAYNNNNRTG 2 cut(s) 70, 1230
Msp20I TGGCCA 1 cut(s) 477
MspI CCGG 1 cut(s) 1250
MspR9I CCNGG 2 cut(s) 368, 1250
MunI CAATTG 1 cut(s) 479
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 5 cut(s) 82, 167, 371, 851, 1105
NarI GGCGCC 1 cut(s) 76
NciI CCSGG 1 cut(s) 1250
NcoI CCATGG 2 cut(s) 71, 621
NdeI CATATG 1 cut(s) 823
NdeII GATC 3 cut(s) 198, 1040, 1258
NlaIII CATG 6 cut(s) 75, 476, 625, 811, 1103, 1108
NlaIV GGNNCC 4 cut(s) 77, 445, 957, 1188
NmeAIII GCCGAG 2 cut(s) 15, 611
NsiI ATGCAT 1 cut(s) 1110
NspI RCATGY 1 cut(s) 1108
NspV TTCGAA 1 cut(s) 865
PaeI GCATGC 1 cut(s) 1108
PceI AGGCCT 1 cut(s) 631
PciSI GCTCTTC 1 cut(s) 1336
PcsI WCGNNNNNNNCGW 1 cut(s) 932
PfeI GAWTC 5 cut(s) 346, 596, 878, 1073, 1244
PflMI CCANNNNNTGG 1 cut(s) 484
PkrI GCNGC 4 cut(s) 163, 364, 847, 951
PleI GAGTC 1 cut(s) 496
PluTI GGCGCC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 496
Psp124BI GAGCTC 2 cut(s) 221, 832
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 4 cut(s) 77, 445, 957, 1188
PspPI GGNCC 2 cut(s) 528, 760
PstI CTGCAG 1 cut(s) 954
PsuI RGATCY 1 cut(s) 1258
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 2 cut(s) 70, 1230
SacI GAGCTC 2 cut(s) 221, 832
SapI GCTCTTC 1 cut(s) 1336
SaqAI TTAA 6 cut(s) 416, 503, 669, 1026, 1254, 1266
SatI GCNGC 4 cut(s) 162, 363, 846, 950
Sau3AI GATC 3 cut(s) 198, 1040, 1258
Sau96I GGNCC 2 cut(s) 528, 760
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 2 cut(s) 368, 1250
SduI GDGCHC 4 cut(s) 46, 221, 832, 932
SfaNI GCATC 1 cut(s) 1266
SfcI CTRYAG 2 cut(s) 950, 1077
SfoI GGCGCC 1 cut(s) 77
SfuI TTCGAA 1 cut(s) 865
SinI GGWCC 1 cut(s) 760
SmiMI CAYNNNNRTG 2 cut(s) 70, 1230
SphI GCATGC 1 cut(s) 1108
Sse9I AATT 8 cut(s) 194, 437, 479, 559, 910, 922, 996, 1302
SseBI AGGCCT 1 cut(s) 631
SsiI CCGC 3 cut(s) 83, 641, 1212
SspDI GGCGCC 1 cut(s) 75
SspMI CTAG 2 cut(s) 564, 1136
SstI GAGCTC 2 cut(s) 221, 832
StuI AGGCCT 1 cut(s) 631
StyD4I CCNGG 2 cut(s) 366, 1248
StyI CCWWGG 3 cut(s) 71, 621, 1335
TaaI ACNGT 3 cut(s) 93, 430, 1172
TaiI ACGT 1 cut(s) 1320
TaqI TCGA 8 cut(s) 215, 434, 599, 693, 865, 881, 896, 1282
TasI AATT 8 cut(s) 194, 437, 479, 559, 910, 922, 996, 1302
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 5 cut(s) 346, 596, 878, 1073, 1244
Tru1I TTAA 6 cut(s) 416, 503, 669, 1026, 1254, 1266
Tru9I TTAA 6 cut(s) 416, 503, 669, 1026, 1254, 1266
TscAI CASTG 4 cut(s) 46, 72, 238, 1237
TseI GCWGC 4 cut(s) 161, 362, 845, 949
TspDTI ATGAA 4 cut(s) 461, 807, 887, 1318
TspGWI ACGGA 2 cut(s) 172, 960
TspRI CASTG 4 cut(s) 46, 72, 238, 1237
Van91I CCANNNNNTGG 1 cut(s) 484
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 760
XapI RAATTY 3 cut(s) 559, 922, 996
XceI RCATGY 1 cut(s) 1108
XspI CTAG 2 cut(s) 564, 1136
Zsp2I ATGCAT 1 cut(s) 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.