AT2G17040

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010486
Physical Location & Seq
Forward (+)
7406911 .. 7408393
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17040.1

Sequence Viewer

Length: 831 bp
ATGGGAAAAGATATTGAGCTCCCGGGTTTTAGGTTCCACCCGACTGAGGAAGAGCTTCTTGATTTCTACCTCAAGAACATGGTTTACGGTAAGAGATCGAGTGTCGAAGTCATTGGTTTCCTTAACATATACCGTCATGATCCATGGGACTTACCTGGTTTATCGAGAATCGGGGAGAGGGAATGGTACTTCTTTGTACCAAGGGAAAGGAAGCATGGGAACGGTGGGAGGCCAAGCAGGACAACTGAAAAAGGATATTGGAAAGCAACTGGATCCGATCGTAAAATCATAAGCTTGTCTGAGCCAAAACGTGTTATAGGGCTCAAGAAGACGCTTGTGTTCTATAGAGGAAGAGCACCAGGAGGAAGCAAGACTGATTGGGTGATGAACGAGTTTCGGATGCCCGATAATTGCTCCTTACCAAAGGATGTTGTGCTTTGTAAGATATATAGAAAAGCTACTTCATTGAAAGTATTGGAGCAAAGGGCAGAGATGGAAGCTAAGATGAATCAAACATGTCCTAACTCTCCTCTTTCGTCTTCCGAGACGATTTCTTTCGTTGGTAAAGAAGAAAACATGATGACTTCGTTCCGTGCTCCTCAAGTAATAGCTATGGAAGAAGCAAACAAGATCCAAATGCATCAAGAAAACGCGAAAACCGAAGAGAAACAAAGAGAAGCAGAGACCAAAGAACCTTCTTCATCACTGAAGCTACCGTTTGGAAGTTTACCAGAGCTACAATTACCAAAACCAGGAGTAGAATGGGACCAGTTGTTGAGTATAAGCCCATGGCTCCAGAATCTTACACCAATAGTTAACATATATTGGTAG

Protein Analysis

276

Amino Acids

31.82

Weight (kDa)

8.96

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 134 4.6e-44 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17040
fragaria_vesca FvH4_2g16180 FvH4_2g16180
malus_domestica MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica Prupe.8G174800_v2.0.a1
pyrus_communis pycom05g12740 pycom10g11550
rosa_chinensis RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata RLG00000013115
rosa_multiflora Rmu_sc0002340.1_g000019
rosa_roxburghii Rroxscaffold_7G00188620
rosa_rugosa Rorug06G0128400
rosa_samantha Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 653
AclWI GGATC 4 cut(s) 134, 267, 280, 625
AcuI CTGAAG 1 cut(s) 728
AfaI GTAC 2 cut(s) 188, 198
AfiI CCNNNNNNNGG 2 cut(s) 46, 752
AflIII ACRYGT 2 cut(s) 310, 515
AgsI TTSAA 1 cut(s) 469
AjnI CCWGG 3 cut(s) 154, 358, 751
AluBI AGCT 8 cut(s) 19, 55, 294, 458, 500, 611, 712, 736
AluI AGCT 8 cut(s) 19, 55, 294, 458, 500, 611, 712, 736
Alw21I GWGCWC 3 cut(s) 21, 358, 598
Alw26I GTCTC 2 cut(s) 539, 677
AlwI GGATC 4 cut(s) 134, 267, 280, 625
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 766
AsuC2I CCSGG 2 cut(s) 23, 24
AsuHPI GGTGA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 22
AvaII GGWCC 1 cut(s) 766
BamHI GGATCC 1 cut(s) 272
BanII GRGCYC 2 cut(s) 21, 324
BbsI GAAGAC 2 cut(s) 335, 531
Bbv12I GWGCWC 3 cut(s) 21, 358, 598
BccI CCATC 1 cut(s) 487
BciT130I CCWGG 3 cut(s) 156, 360, 753
BcnI CCSGG 2 cut(s) 23, 24
BcoDI GTCTC 2 cut(s) 539, 677
BfmI CTRYAG 1 cut(s) 343
Bme1390I CCNGG 5 cut(s) 23, 24, 156, 360, 753
Bme18I GGWCC 1 cut(s) 766
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 766
BmiI GGNNCC 4 cut(s) 35, 274, 767, 794
BmrFI CCNGG 5 cut(s) 23, 24, 156, 360, 753
BmsI GCATC 2 cut(s) 390, 649
BpiI GAAGAC 2 cut(s) 335, 531
BpmI CTGGAG 1 cut(s) 779
BpuEI CTTGAG 3 cut(s) 56, 308, 585
BpuMI CCSGG 2 cut(s) 23, 24
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 4 cut(s) 22, 143, 200, 788
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 752
Bse1I ACTGG 2 cut(s) 274, 769
BseBI CCWGG 3 cut(s) 156, 360, 753
BseDI CCNNGG 4 cut(s) 22, 143, 200, 788
BseGI GGATG 2 cut(s) 405, 433
BseLI CCNNNNNNNGG 2 cut(s) 46, 752
BseMII CTCAG 2 cut(s) 36, 291
BseNI ACTGG 2 cut(s) 274, 769
BseRI GAGGAG 2 cut(s) 519, 588
Bsh1236I CGCG 1 cut(s) 653
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 3 cut(s) 21, 358, 598
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 1 cut(s) 23
BslFI GGGAC 2 cut(s) 161, 779
BslI CCNNNNNNNGG 2 cut(s) 46, 752
BsmAI GTCTC 2 cut(s) 539, 677
BsmBI CGTCTC 1 cut(s) 539
BsmFI GGGAC 2 cut(s) 161, 779
BsnI GGCC 1 cut(s) 232
Bso31I GGTCTC 1 cut(s) 677
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 4 cut(s) 21, 324, 358, 598
Bsp143I GATC 5 cut(s) 95, 139, 272, 277, 630
Bsp19I CCATGG 2 cut(s) 143, 788
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 2 cut(s) 37, 292
BspFNI CGCG 1 cut(s) 653
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 4 cut(s) 35, 274, 767, 794
BspPI GGATC 4 cut(s) 134, 267, 280, 625
BspQI GCTCTTC 2 cut(s) 45, 346
BspTNI GGTCTC 1 cut(s) 677
BsrI ACTGG 2 cut(s) 274, 769
BssECI CCNNGG 4 cut(s) 22, 143, 200, 788
BssMI GATC 5 cut(s) 95, 139, 272, 277, 630
BssT1I CCWWGG 3 cut(s) 143, 200, 788
Bst2UI CCWGG 3 cut(s) 156, 360, 753
Bst4CI ACNGT 4 cut(s) 89, 134, 224, 717
Bst6I CTCTTC 3 cut(s) 45, 346, 657
BstDEI CTNAG 3 cut(s) 45, 300, 501
BstDSI CCRYGG 2 cut(s) 143, 788
BstF5I GGATG 2 cut(s) 405, 433
BstFNI CGCG 1 cut(s) 653
BstKTI GATC 5 cut(s) 98, 142, 275, 280, 633
BstMAI GTCTC 2 cut(s) 539, 677
BstMBI GATC 5 cut(s) 95, 139, 272, 277, 630
BstMCI CGRYCG 1 cut(s) 280
BstNI CCWGG 3 cut(s) 156, 360, 753
BstNSI RCATGY 1 cut(s) 519
BstSCI CCNGG 5 cut(s) 21, 22, 154, 358, 751
BstSFI CTRYAG 1 cut(s) 343
BstUI CGCG 1 cut(s) 653
BstV2I GAAGAC 2 cut(s) 335, 531
BstX2I RGATCY 2 cut(s) 272, 630
BstYI RGATCY 2 cut(s) 272, 630
BsuRI GGCC 1 cut(s) 232
BtgI CCRYGG 2 cut(s) 143, 788
BtsCI GGATG 2 cut(s) 405, 433
BtsIMutI CAGTG 1 cut(s) 704
CciI TCATGA 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 766
Cfr9I CCCGGG 1 cut(s) 22
CseI GACGC 1 cut(s) 340
CsiI ACCWGGT 1 cut(s) 154
Csp6I GTAC 2 cut(s) 187, 197
CviAII CATG 7 cut(s) 79, 137, 144, 215, 516, 577, 789
CviQI GTAC 2 cut(s) 187, 197
DdeI CTNAG 3 cut(s) 45, 300, 501
DpnI GATC 5 cut(s) 97, 141, 274, 279, 632
DpnII GATC 5 cut(s) 95, 139, 272, 277, 630
Eam1104I CTCTTC 3 cut(s) 45, 346, 657
EarI CTCTTC 3 cut(s) 45, 346, 657
Ecl136II GAGCTC 1 cut(s) 19
Eco130I CCWWGG 3 cut(s) 143, 200, 788
Eco24I GRGCYC 2 cut(s) 21, 324
Eco31I GGTCTC 1 cut(s) 677
Eco47I GGWCC 1 cut(s) 766
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 728
Eco88I CYCGRG 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 19
EcoRII CCWGG 3 cut(s) 154, 358, 751
EcoT14I CCWWGG 3 cut(s) 143, 200, 788
EcoT22I ATGCAT 1 cut(s) 642
EcoT38I GRGCYC 2 cut(s) 21, 324
ErhI CCWWGG 3 cut(s) 143, 200, 788
Esp3I CGTCTC 1 cut(s) 539
FaeI CATG 7 cut(s) 82, 140, 147, 218, 519, 580, 792
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 2 cut(s) 161, 779
FatI CATG 7 cut(s) 78, 136, 143, 214, 515, 576, 788
FokI GGATG 2 cut(s) 412, 440
FriOI GRGCYC 2 cut(s) 21, 324
GsuI CTGGAG 1 cut(s) 779
HaeIII GGCC 1 cut(s) 232
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 340
Hin1II CATG 7 cut(s) 82, 140, 147, 218, 519, 580, 792
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 3 cut(s) 168, 508, 799
HpaI GTTAAC 1 cut(s) 817
HpaII CCGG 1 cut(s) 23
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 3 cut(s) 85, 728, 817
Hpy188I TCNGA 4 cut(s) 277, 301, 399, 544
Hpy188III TCNNGA 7 cut(s) 59, 73, 137, 165, 325, 644, 796
Hpy8I GTNNAC 3 cut(s) 85, 728, 817
HpyAV CCTTC 1 cut(s) 705
HpyCH4III ACNGT 4 cut(s) 89, 134, 224, 717
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 1 cut(s) 640
HpyF3I CTNAG 3 cut(s) 45, 300, 501
HpySE526I ACGT 1 cut(s) 310
Hsp92II CATG 7 cut(s) 82, 140, 147, 218, 519, 580, 792
KspAI GTTAAC 1 cut(s) 817
Kzo9I GATC 5 cut(s) 95, 139, 272, 277, 630
LguI GCTCTTC 2 cut(s) 45, 346
LmnI GCTCC 5 cut(s) 24, 419, 478, 601, 798
LweI GCATC 2 cut(s) 390, 649
MabI ACCWGGT 1 cut(s) 154
MaeII ACGT 1 cut(s) 310
MalI GATC 5 cut(s) 97, 141, 274, 279, 632
MboI GATC 5 cut(s) 95, 139, 272, 277, 630
MboII GAAGA 8 cut(s) 62, 340, 363, 531, 581, 629, 674, 690
MflI RGATCY 2 cut(s) 272, 630
MhlI GDGCHC 4 cut(s) 21, 324, 358, 598
MluCI AATT 2 cut(s) 409, 740
MnlI CCTC 8 cut(s) 40, 80, 171, 222, 341, 356, 540, 609
Mph1103I ATGCAT 1 cut(s) 642
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 2 cut(s) 123, 816
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 5 cut(s) 23, 24, 156, 360, 753
MvaI CCWGG 3 cut(s) 156, 360, 753
MvnI CGCG 1 cut(s) 653
NciI CCSGG 2 cut(s) 23, 24
NcoI CCATGG 2 cut(s) 143, 788
NdeII GATC 5 cut(s) 95, 139, 272, 277, 630
NlaIII CATG 7 cut(s) 82, 140, 147, 218, 519, 580, 792
NlaIV GGNNCC 4 cut(s) 35, 274, 767, 794
NsiI ATGCAT 1 cut(s) 642
NspI RCATGY 1 cut(s) 519
PagI TCATGA 1 cut(s) 136
PciI ACATGT 1 cut(s) 515
PciSI GCTCTTC 2 cut(s) 45, 346
PcsI WCGNNNNNNNCGW 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 168, 508, 799
Ple19I CGATCG 1 cut(s) 280
PscI ACATGT 1 cut(s) 515
Psp124BI GAGCTC 1 cut(s) 21
Psp6I CCWGG 3 cut(s) 154, 358, 751
PspGI CCWGG 3 cut(s) 154, 358, 751
PspN4I GGNNCC 4 cut(s) 35, 274, 767, 794
PspPI GGNCC 1 cut(s) 766
PsrI GAACNNNNNNTAC 2 cut(s) 68, 100
PsuI RGATCY 2 cut(s) 272, 630
PvuI CGATCG 1 cut(s) 280
RsaI GTAC 2 cut(s) 188, 198
RsaNI GTAC 2 cut(s) 187, 197
SacI GAGCTC 1 cut(s) 21
SapI GCTCTTC 2 cut(s) 45, 346
SaqAI TTAA 2 cut(s) 123, 816
Sau3AI GATC 5 cut(s) 95, 139, 272, 277, 630
Sau96I GGNCC 1 cut(s) 766
ScrFI CCNGG 5 cut(s) 23, 24, 156, 360, 753
SduI GDGCHC 4 cut(s) 21, 324, 358, 598
SexAI ACCWGGT 1 cut(s) 154
SfaNI GCATC 2 cut(s) 390, 649
SfcI CTRYAG 1 cut(s) 343
SinI GGWCC 1 cut(s) 766
SmaI CCCGGG 1 cut(s) 24
SmlI CTYRAG 3 cut(s) 71, 323, 600
SmoI CTYRAG 3 cut(s) 71, 323, 600
Sse9I AATT 2 cut(s) 409, 740
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 5 cut(s) 21, 22, 154, 358, 751
StyI CCWWGG 3 cut(s) 143, 200, 788
TaaI ACNGT 4 cut(s) 89, 134, 224, 717
TaiI ACGT 1 cut(s) 313
TaqI TCGA 3 cut(s) 98, 105, 164
TasI AATT 2 cut(s) 409, 740
TfiI GAWTC 3 cut(s) 168, 508, 799
Tru1I TTAA 2 cut(s) 123, 816
Tru9I TTAA 2 cut(s) 123, 816
TscAI CASTG 1 cut(s) 711
TspDTI ATGAA 4 cut(s) 401, 453, 521, 690
TspGWI ACGGA 1 cut(s) 581
TspMI CCCGGG 1 cut(s) 22
TspRI CASTG 1 cut(s) 711
VpaK11BI GGWCC 1 cut(s) 766
XceI RCATGY 1 cut(s) 519
XcmI CCANNNNNNNNNTGG 1 cut(s) 759
XmaI CCCGGG 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.