FvH4_2g16180
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010486
Physical Location & Seq
Forward (+)
14147205 .. 14149409
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16180.t2

Sequence Viewer

Length: 930 bp
ATGGCATCTGAAATGACACCAGAACTCGAACTTCCCGGGTTTCGATTCCACCCCACAGAGGAGGAGCTTCTCGAGTTCTACCTCAAAAGCGTGGTGTTCGGGAAGCGATTGCGCTTCGATATAATCGAGTTTCTTAACATCTACCGTCACGATCCTTGGGACTTGCCTGGATTGTCAAAGATTGGAGAAAGGGAGTGGTATTTTTTCGTGCCGAGGGACAGGAAGCATGGGAGTGGAGGAAGGCCTAACAGAACCACTGAAACTGGGTTTTGGAAAGCGACTGGTTCTGACCGCAAAATCGTGAGCTTATCTGATCCAAAGAGGATCATCGGGTTGCGAAAGACTCTCGTGTTCTACAAAGGGAGAGCACCAAGAGGAACCAAGACCGATTGGGTCATGAACGAGTATCGTTTGCCTGACCACTGCAAATTGCTCAAGGACATAGTACTGTGCAAGATATATAGGAAGGCAACTTCCTTGAAAGTGCTAGAGCAAAGGGCAGCAATGGAGGAAGACATGAAGATGGGGAATTCCCCTAACATTTCATCATCCCCTCCTACATCAATGGACACCACCATCTCATTTTCCAGCTTCCAAGAACAGGAATTAGCACAACATCTTCAACACCATCATCATGATCTAACTCCGCAAACTCCAATAATGCCCGCCAATCTCAAGAAAGAACTAGCAGATGATGCAGCAGTTGCAGTAGCAGAAGAGCAGCTAAAGGAGGAGAATGAGCAAGCAGTGGAGATGAAGGAGTCTCCCACATCTCTTCAGACTCCTTTTAGAAAAAACAAGCTGCCAGAGCTTATAGTTCCCAAGACGAGCATGGACTGGACCCAAGACCAATTTTGGGCACCCATGAATAGTCCTTGGCTTCTGTCGACCCCTGCTTATGCCAGCCTTCTCAACCTGGAATTACTTTGA

Protein Analysis

310

Amino Acids

35.67

Weight (kDa)

6.53

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 13 - 92 7.7e-25 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17040
fragaria_vesca FvH4_2g16180 FvH4_2g16180
malus_domestica MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica Prupe.8G174800_v2.0.a1
pyrus_communis pycom05g12740 pycom10g11550
rosa_chinensis RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata RLG00000013115
rosa_multiflora Rmu_sc0002340.1_g000019
rosa_roxburghii Rroxscaffold_7G00188620
rosa_rugosa Rorug06G0128400
rosa_samantha Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 859
AccI GTMKAC 1 cut(s) 887
AciI CCGC 3 cut(s) 292, 647, 666
AclWI GGATC 3 cut(s) 146, 308, 332
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 1 cut(s) 761
AfaI GTAC 1 cut(s) 447
AfiI CCNNNNNNNGG 3 cut(s) 58, 601, 856
AgsI TTSAA 2 cut(s) 481, 623
AjnI CCWGG 2 cut(s) 166, 915
AluBI AGCT 6 cut(s) 67, 306, 591, 724, 802, 811
AluI AGCT 6 cut(s) 67, 306, 591, 724, 802, 811
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 1 cut(s) 768
AlwI GGATC 3 cut(s) 146, 308, 332
Ama87I CYCGRG 2 cut(s) 35, 71
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 4 cut(s) 500, 698, 721, 802
ApoI RAATTY 1 cut(s) 529
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 840
AsuC2I CCSGG 2 cut(s) 36, 37
AvaI CYCGRG 2 cut(s) 35, 71
AvaII GGWCC 1 cut(s) 840
BaeGI GKGCMC 1 cut(s) 862
BanI GGYRCC 1 cut(s) 859
BauI CACGAG 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 4 cut(s) 512, 710, 733, 789
BccI CCATC 3 cut(s) 517, 584, 636
BciT130I CCWGG 2 cut(s) 168, 917
BcnI CCSGG 2 cut(s) 36, 37
BcoDI GTCTC 1 cut(s) 768
BfaI CTAG 2 cut(s) 488, 686
BisI GCNGC 4 cut(s) 501, 699, 722, 803
BlsI GCNGC 4 cut(s) 502, 700, 723, 804
BmcAI AGTACT 1 cut(s) 447
Bme1390I CCNGG 4 cut(s) 36, 37, 168, 917
Bme18I GGWCC 1 cut(s) 840
BmeT110I CYCGRG 2 cut(s) 35, 71
BmgT120I GGNCC 1 cut(s) 840
BmiI GGNNCC 3 cut(s) 379, 842, 861
BmrFI CCNGG 4 cut(s) 36, 37, 168, 917
BmrI ACTGGG 1 cut(s) 273
BmsI GCATC 2 cut(s) 14, 685
BmuI ACTGGG 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 419, 659
BpuMI CCSGG 2 cut(s) 36, 37
BsaJI CCNNGG 4 cut(s) 35, 155, 212, 875
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 601, 856
Bse1I ACTGG 3 cut(s) 268, 286, 842
Bse3DI GCAATG 1 cut(s) 510
BseBI CCWGG 2 cut(s) 168, 917
BseDI CCNNGG 4 cut(s) 35, 155, 212, 875
BseGI GGATG 1 cut(s) 548
BseLI CCNNNNNNNGG 3 cut(s) 58, 601, 856
BseMI GCAATG 1 cut(s) 510
BseNI ACTGG 3 cut(s) 268, 286, 842
BseRI GAGGAG 3 cut(s) 74, 77, 746
BseSI GKGCMC 1 cut(s) 862
BseXI GCAGC 4 cut(s) 512, 710, 733, 789
BshFI GGCC 1 cut(s) 244
BshNI GGYRCC 1 cut(s) 859
BsiHKAI GWGCWC 1 cut(s) 370
BsiHKCI CYCGRG 2 cut(s) 35, 71
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 2 cut(s) 173, 230
BslI CCNNNNNNNGG 3 cut(s) 58, 601, 856
BsmAI GTCTC 1 cut(s) 768
BsmFI GGGAC 2 cut(s) 173, 230
BsnI GGCC 1 cut(s) 244
BsoBI CYCGRG 2 cut(s) 35, 71
Bsp1286I GDGCHC 2 cut(s) 370, 862
Bsp143I GATC 4 cut(s) 151, 313, 324, 637
BspACI CCGC 3 cut(s) 292, 647, 666
BspANI GGCC 1 cut(s) 244
BspHI TCATGA 2 cut(s) 396, 634
BspLI GGNNCC 3 cut(s) 379, 842, 861
BspPI GGATC 3 cut(s) 146, 308, 332
BspQI GCTCTTC 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 859
BsrDI GCAATG 1 cut(s) 510
BsrI ACTGG 3 cut(s) 268, 286, 842
BssECI CCNNGG 4 cut(s) 35, 155, 212, 875
BssMI GATC 4 cut(s) 151, 313, 324, 637
BssSI CACGAG 1 cut(s) 347
BssT1I CCWWGG 2 cut(s) 155, 875
Bst2BI CACGAG 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 168, 917
Bst4CI ACNGT 2 cut(s) 146, 450
Bst6I CTCTTC 2 cut(s) 711, 780
BstAPI GCANNNNNTGC 2 cut(s) 695, 704
BstC8I GCNNGC 3 cut(s) 666, 744, 904
BstF5I GGATG 1 cut(s) 548
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 4 cut(s) 154, 316, 327, 640
BstMAI GTCTC 1 cut(s) 768
BstMBI GATC 4 cut(s) 151, 313, 324, 637
BstMWI GCNNNNNNNGC 3 cut(s) 695, 704, 808
BstNI CCWGG 2 cut(s) 168, 917
BstSCI CCNGG 4 cut(s) 34, 35, 166, 915
BstSLI GKGCMC 1 cut(s) 862
BstV1I GCAGC 4 cut(s) 512, 710, 733, 789
BstV2I GAAGAC 1 cut(s) 519
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 548
BtsI GCAGTG 2 cut(s) 421, 753
BtsIMutI CAGTG 3 cut(s) 255, 421, 753
Cac8I GCNNGC 3 cut(s) 666, 744, 904
CciI TCATGA 2 cut(s) 396, 634
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 840
Cfr9I CCCGGG 1 cut(s) 35
Csp6I GTAC 1 cut(s) 446
CviAII CATG 6 cut(s) 227, 397, 517, 635, 832, 865
CviJI RGCY 9 cut(s) 67, 244, 306, 591, 724, 802, 811, 880, 906
CviKI_1 RGCY 9 cut(s) 67, 244, 306, 591, 724, 802, 811, 880, 906
CviQI GTAC 1 cut(s) 446
DpnI GATC 4 cut(s) 153, 315, 326, 639
DpnII GATC 4 cut(s) 151, 313, 324, 637
Eam1104I CTCTTC 2 cut(s) 711, 780
EarI CTCTTC 2 cut(s) 711, 780
Eco130I CCWWGG 2 cut(s) 155, 875
Eco147I AGGCCT 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 840
Eco57I CTGAAG 1 cut(s) 761
Eco88I CYCGRG 2 cut(s) 35, 71
EcoRI GAATTC 1 cut(s) 529
EcoRII CCWGG 2 cut(s) 166, 915
EcoT14I CCWWGG 2 cut(s) 155, 875
ErhI CCWWGG 2 cut(s) 155, 875
FaeI CATG 6 cut(s) 230, 400, 520, 638, 835, 868
FaqI GGGAC 2 cut(s) 173, 230
FatI CATG 6 cut(s) 226, 396, 516, 634, 831, 864
FauI CCCGC 1 cut(s) 673
FblI GTMKAC 1 cut(s) 887
Fnu4HI GCNGC 4 cut(s) 501, 699, 722, 803
FokI GGATG 1 cut(s) 535
Fsp4HI GCNGC 4 cut(s) 501, 699, 722, 803
FspBI CTAG 2 cut(s) 488, 686
GlaI GCGC 1 cut(s) 113
GluI GCNGC 4 cut(s) 501, 699, 722, 803
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 114
Hin1II CATG 6 cut(s) 230, 400, 520, 638, 835, 868
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HincII GTYRAC 1 cut(s) 888
HindII GTYRAC 1 cut(s) 888
HinfI GANTC 4 cut(s) 45, 343, 761, 781
HpaII CCGG 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 888
Hpy188I TCNGA 4 cut(s) 10, 289, 313, 780
Hpy188III TCNNGA 7 cut(s) 71, 100, 149, 301, 397, 635, 676
Hpy8I GTNNAC 1 cut(s) 888
HpyAV CCTTC 4 cut(s) 234, 460, 751, 917
HpyCH4III ACNGT 2 cut(s) 146, 450
HpyCH4V TGCA 4 cut(s) 426, 453, 698, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 695, 704, 808
Hsp92II CATG 6 cut(s) 230, 400, 520, 638, 835, 868
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 4 cut(s) 151, 313, 324, 637
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 4 cut(s) 512, 710, 733, 789
LweI GCATC 2 cut(s) 14, 685
MaeI CTAG 2 cut(s) 488, 686
MaeIII GTNAC 1 cut(s) 146
MalI GATC 4 cut(s) 153, 315, 326, 639
MboI GATC 4 cut(s) 151, 313, 324, 637
MboII GAAGA 5 cut(s) 524, 532, 611, 728, 767
MhlI GDGCHC 2 cut(s) 370, 862
MluCI AATT 5 cut(s) 428, 529, 605, 851, 920
MlyI GAGTC 3 cut(s) 337, 770, 775
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 3 cut(s) 231, 521, 633
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 4 cut(s) 36, 37, 168, 917
MvaI CCWGG 2 cut(s) 168, 917
MwoI GCNNNNNNNGC 3 cut(s) 695, 704, 808
NciI CCSGG 2 cut(s) 36, 37
NdeII GATC 4 cut(s) 151, 313, 324, 637
NlaIII CATG 6 cut(s) 230, 400, 520, 638, 835, 868
NlaIV GGNNCC 3 cut(s) 379, 842, 861
NmeAIII GCCGAG 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 146
PaeR7I CTCGAG 1 cut(s) 71
PagI TCATGA 2 cut(s) 396, 634
PceI AGGCCT 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 711
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 1 cut(s) 45
PkrI GCNGC 4 cut(s) 502, 700, 723, 804
PleI GAGTC 3 cut(s) 337, 769, 775
PpsI GAGTC 3 cut(s) 337, 769, 775
Psp6I CCWGG 2 cut(s) 166, 915
PspGI CCWGG 2 cut(s) 166, 915
PspN4I GGNNCC 3 cut(s) 379, 842, 861
PspPI GGNCC 1 cut(s) 840
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
RseI CAYNNNNRTG 3 cut(s) 231, 521, 633
SalI GTCGAC 1 cut(s) 886
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 4 cut(s) 501, 699, 722, 803
Sau3AI GATC 4 cut(s) 151, 313, 324, 637
Sau96I GGNCC 1 cut(s) 840
ScaI AGTACT 1 cut(s) 447
SchI GAGTC 3 cut(s) 337, 770, 775
ScrFI CCNGG 4 cut(s) 36, 37, 168, 917
SduI GDGCHC 2 cut(s) 370, 862
SetI ASST 8 cut(s) 69, 84, 308, 593, 726, 804, 813, 918
SfaNI GCATC 2 cut(s) 14, 685
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 840
SlaI CTCGAG 1 cut(s) 71
SmaI CCCGGG 1 cut(s) 37
SmiMI CAYNNNNRTG 3 cut(s) 231, 521, 633
SmlI CTYRAG 3 cut(s) 71, 434, 674
SmoI CTYRAG 3 cut(s) 71, 434, 674
Sse9I AATT 5 cut(s) 428, 529, 605, 851, 920
SseBI AGGCCT 1 cut(s) 244
SsiI CCGC 3 cut(s) 292, 647, 666
SspMI CTAG 2 cut(s) 488, 686
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 4 cut(s) 34, 35, 166, 915
StyI CCWWGG 2 cut(s) 155, 875
TaaI ACNGT 2 cut(s) 146, 450
TaqI TCGA 6 cut(s) 27, 43, 72, 117, 126, 887
TaqII GACCGA 1 cut(s) 401
TasI AATT 5 cut(s) 428, 529, 605, 851, 920
TatI WGTACW 1 cut(s) 445
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 3 cut(s) 262, 428, 753
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 4 cut(s) 500, 698, 721, 802
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 5 cut(s) 413, 533, 534, 770, 881
TspMI CCCGGG 1 cut(s) 35
TspRI CASTG 3 cut(s) 262, 428, 753
VpaK11BI GGWCC 1 cut(s) 840
XapI RAATTY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 829
XhoI CTCGAG 1 cut(s) 71
XmaI CCCGGG 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 887
XspI CTAG 2 cut(s) 488, 686
ZrmI AGTACT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.