Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010486

Physical Location & Seq

Genomic Coordinates Forward (+)

17765903 .. 17768100

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G174800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCAGCCAACACCAAGGATCAAGAACAAATGACCCCAGAATTTGAACTTCCAGGATTTAGATTCCACCCCACAGAAGAAGAACTTCTTGAGTTCTACCTCAAGAGCGTGGTTTTCGGAAAGAGACAGCGTTTTGACATAATTGGTTTTCTCAATATCTACCACCATGATCCTTGGGACTTGCCTGGGTTGTCGAAGATTGGAGAAAGAGAGTGGTATTTTTTTGTGCCAAGGGACAGGAAGCATGGCAGTGGAGGAAGGCCTAACAGAACCACTGAAACTGGGTTCTGGAAAGCCACCGGCTCTGACCGCAAAATTGTGAGCCTCTCAGATCCAAAGAGGATCATTGGGCTCAGAAAGACTCTTGTTTTTTACAAAGGCAGAGCCCCAAGAGGAACCAAGACTGATTGGGTCATGAACGAGTATCGTTTGCCTGATAACTGCCACTATCTAAAGGACATAGTGCTATGCAAGATATATAGGAAGGCAACTTCCTTGAAAGTCCTAGAGCAAAGGGCAGCAATGGAGGAAGAGATAAAGAACTTTCATCCTTCTCCAAACACATCATCTCCTCCAACATCAATGGAGACCATCTCATTTTGCAGCCAATCACAGGAAGATCTGACTCTACAAATGCCCAAAAACTATGTGGTATTGAAGCAAGAAATGGATGATGCATCACTAACAGAAGAGAAAGAGCCAAAGGAAGAGAAGGCAATGGAGATCAAAGGGTCTCCTCCTCCTCCCACATACATATTGCCAGAGATCCAAGTGCCAAGATTGAGCGTGGACTGGACCCAAGACGCATTTTGGACCCAAATGAATAGCCCTTGGCTTCAAAACCTGACCCCTTTGCCCAACCTTCTCAACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

292

Amino Acids

33.89

Weight (kDa)

6.62

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17040
fragaria_vesca	FvH4_2g16180 FvH4_2g16180
malus_domestica	MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica	Prupe.8G174800_v2.0.a1
pyrus_communis	pycom05g12740 pycom10g11550
rosa_chinensis	RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata	RLG00000013115
rosa_multiflora	Rmu_sc0002340.1_g000019
rosa_roxburghii	Rroxscaffold_7G00188620
rosa_rugosa	Rorug06G0128400
rosa_samantha	Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana	Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	5 cut(s)	27, 164, 326, 350, 760
AcsI	RAATTY	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	613
AgsI	TTSAA	4 cut(s)	47, 499, 658, 839
AjnI	CCWGG	2 cut(s)	52, 184
Alw26I	GTCTC	3 cut(s)	118, 581, 738
AlwI	GGATC	5 cut(s)	27, 164, 326, 350, 760
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	3 cut(s)	5, 518, 603
ApoI	RAATTY	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	795, 813
AvaII	GGWCC	2 cut(s)	795, 813
BanII	GRGCYC	2 cut(s)	354, 388
BbvI	GCAGC	3 cut(s)	17, 530, 615
BccI	CCATC	1 cut(s)	599
BciT130I	CCWGG	2 cut(s)	54, 186
BcoDI	GTCTC	3 cut(s)	118, 581, 738
BfaI	CTAG	1 cut(s)	506
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	3 cut(s)	6, 519, 604
BlsI	GCNGC	3 cut(s)	7, 520, 605
Bme1390I	CCNGG	2 cut(s)	54, 186
Bme18I	GGWCC	2 cut(s)	795, 813
BmgT120I	GGNCC	2 cut(s)	795, 813
BmiI	GGNNCC	3 cut(s)	397, 797, 815
BmrFI	CCNGG	2 cut(s)	54, 186
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	664, 686
BmuI	ACTGGG	1 cut(s)	291
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpuEI	CTTGAG	2 cut(s)	86, 110
BsaI	GGTCTC	2 cut(s)	581, 738
BsaJI	CCNNGG	5 cut(s)	15, 173, 185, 230, 830
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	286, 797
Bse3DI	GCAATG	2 cut(s)	528, 723
BseBI	CCWGG	2 cut(s)	54, 186
BseDI	CCNNGG	5 cut(s)	15, 173, 185, 230, 830
BseGI	GGATG	2 cut(s)	547, 676
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMI	GCAATG	2 cut(s)	528, 723
BseMII	CTCAG	2 cut(s)	342, 367
BseNI	ACTGG	2 cut(s)	286, 797
BseRI	GAGGAG	4 cut(s)	561, 726, 729, 732
BseXI	GCAGC	3 cut(s)	17, 530, 615
BshFI	GGCC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	2 cut(s)	191, 248
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmAI	GTCTC	3 cut(s)	118, 581, 738
BsmFI	GGGAC	2 cut(s)	191, 248
BsnI	GGCC	1 cut(s)	262
Bso31I	GGTCTC	2 cut(s)	581, 738
Bsp1286I	GDGCHC	2 cut(s)	354, 388
Bsp143I	GATC	7 cut(s)	19, 169, 331, 342, 619, 723, 765
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	2 cut(s)	341, 366
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	397, 797, 815
BspPI	GGATC	5 cut(s)	27, 164, 326, 350, 760
BspTNI	GGTCTC	2 cut(s)	581, 738
BsrDI	GCAATG	2 cut(s)	528, 723
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	286, 797
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	5 cut(s)	15, 173, 185, 230, 830
BssMI	GATC	7 cut(s)	19, 169, 331, 342, 619, 723, 765
BssT1I	CCWWGG	4 cut(s)	15, 173, 230, 830
Bst2UI	CCWGG	2 cut(s)	54, 186
Bst6I	CTCTTC	3 cut(s)	525, 684, 702
BstDEI	CTNAG	2 cut(s)	328, 353
BstF5I	GGATG	2 cut(s)	547, 676
BstKTI	GATC	7 cut(s)	22, 172, 334, 345, 622, 726, 768
BstMAI	GTCTC	3 cut(s)	118, 581, 738
BstMBI	GATC	7 cut(s)	19, 169, 331, 342, 619, 723, 765
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	2 cut(s)	54, 186
BstSCI	CCNGG	2 cut(s)	52, 184
BstV1I	GCAGC	3 cut(s)	17, 530, 615
BstX2I	RGATCY	3 cut(s)	331, 619, 765
BstYI	RGATCY	3 cut(s)	331, 619, 765
BsuRI	GGCC	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	547, 676
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	2 cut(s)	256, 273
CciI	TCATGA	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	795, 813
CseI	GACGC	1 cut(s)	812
CviAII	CATG	3 cut(s)	167, 245, 415
DdeI	CTNAG	2 cut(s)	328, 353
DpnI	GATC	7 cut(s)	21, 171, 333, 344, 621, 725, 767
DpnII	GATC	7 cut(s)	19, 169, 331, 342, 619, 723, 765
Eam1104I	CTCTTC	3 cut(s)	525, 684, 702
EarI	CTCTTC	3 cut(s)	525, 684, 702
Eco130I	CCWWGG	4 cut(s)	15, 173, 230, 830
Eco147I	AGGCCT	1 cut(s)	262
Eco24I	GRGCYC	2 cut(s)	354, 388
Eco31I	GGTCTC	2 cut(s)	581, 738
Eco47I	GGWCC	2 cut(s)	795, 813
EcoRII	CCWGG	2 cut(s)	52, 184
EcoT14I	CCWWGG	4 cut(s)	15, 173, 230, 830
EcoT22I	ATGCAT	1 cut(s)	679
EcoT38I	GRGCYC	2 cut(s)	354, 388
ErhI	CCWWGG	4 cut(s)	15, 173, 230, 830
FaeI	CATG	3 cut(s)	170, 248, 418
FalI	AAGNNNNNCTT	4 cut(s)	69, 101, 72, 104
FaqI	GGGAC	2 cut(s)	191, 248
FatI	CATG	3 cut(s)	166, 244, 414
Fnu4HI	GCNGC	3 cut(s)	6, 519, 604
FokI	GGATG	2 cut(s)	534, 683
FriOI	GRGCYC	2 cut(s)	354, 388
Fsp4HI	GCNGC	3 cut(s)	6, 519, 604
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	3 cut(s)	6, 519, 604
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	812
Hin1II	CATG	3 cut(s)	170, 248, 418
HinfI	GANTC	3 cut(s)	63, 361, 625
HpaII	CCGG	1 cut(s)	300
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	5 cut(s)	119, 307, 331, 356, 624
Hpy188III	TCNNGA	5 cut(s)	23, 89, 103, 289, 415
Hpy8I	GTNNAC	1 cut(s)	790
HpyAV	CCTTC	5 cut(s)	252, 478, 561, 706, 872
HpyCH4V	TGCA	3 cut(s)	471, 603, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	2 cut(s)	328, 353
Hsp92II	CATG	3 cut(s)	170, 248, 418
Kzo9I	GATC	7 cut(s)	19, 169, 331, 342, 619, 723, 765
Lsp1109I	GCAGC	3 cut(s)	17, 530, 615
LweI	GCATC	2 cut(s)	664, 686
MaeI	CTAG	1 cut(s)	506
MalI	GATC	7 cut(s)	21, 171, 333, 344, 621, 725, 767
MboI	GATC	7 cut(s)	19, 169, 331, 342, 619, 723, 765
MboII	GAAGA	7 cut(s)	89, 92, 208, 542, 629, 701, 719
MflI	RGATCY	3 cut(s)	331, 619, 765
MhlI	GDGCHC	2 cut(s)	354, 388
MluCI	AATT	3 cut(s)	41, 141, 315
MlyI	GAGTC	2 cut(s)	355, 619
MmeI	TCCRAC	1 cut(s)	599
Mph1103I	ATGCAT	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	2 cut(s)	54, 186
MvaI	CCWGG	2 cut(s)	54, 186
MwoI	GCNNNNNNNGC	1 cut(s)	309
NdeII	GATC	7 cut(s)	19, 169, 331, 342, 619, 723, 765
NlaIII	CATG	3 cut(s)	170, 248, 418
NlaIV	GGNNCC	3 cut(s)	397, 797, 815
NsiI	ATGCAT	1 cut(s)	679
PagI	TCATGA	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	7, 520, 605
PleI	GAGTC	2 cut(s)	355, 619
PpsI	GAGTC	2 cut(s)	355, 619
Psp6I	CCWGG	2 cut(s)	52, 184
PspGI	CCWGG	2 cut(s)	52, 184
PspN4I	GGNNCC	3 cut(s)	397, 797, 815
PspPI	GGNCC	2 cut(s)	795, 813
PsuI	RGATCY	3 cut(s)	331, 619, 765
RseI	CAYNNNNRTG	1 cut(s)	249
SatI	GCNGC	3 cut(s)	6, 519, 604
Sau3AI	GATC	7 cut(s)	19, 169, 331, 342, 619, 723, 765
Sau96I	GGNCC	2 cut(s)	795, 813
SchI	GAGTC	2 cut(s)	355, 619
ScrFI	CCNGG	2 cut(s)	54, 186
SduI	GDGCHC	2 cut(s)	354, 388
SetI	ASST	3 cut(s)	102, 846, 864
SfaNI	GCATC	2 cut(s)	664, 686
SinI	GGWCC	2 cut(s)	795, 813
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	89, 101
SmoI	CTYRAG	2 cut(s)	89, 101
Sse9I	AATT	3 cut(s)	41, 141, 315
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	1 cut(s)	506
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	52, 184
StyI	CCWWGG	4 cut(s)	15, 173, 230, 830
TaqI	TCGA	1 cut(s)	194
TasI	AATT	3 cut(s)	41, 141, 315
TfiI	GAWTC	1 cut(s)	63
TscAI	CASTG	2 cut(s)	256, 280
TseI	GCWGC	3 cut(s)	5, 518, 603
TspDTI	ATGAA	3 cut(s)	431, 536, 836
TspRI	CASTG	2 cut(s)	256, 280
VpaK11BI	GGWCC	2 cut(s)	795, 813
XapI	RAATTY	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.