Rroxscaffold_7G00188620
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010486
Physical Location & Seq
Reverse (-)
28208669 .. 28211508
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188620.1

Sequence Viewer

Length: 969 bp
ATGTTAGTTCAACTCAAAAGAATCAATCAAGGTGCTTATTCCTACCTCAATCATCCTCCCTCTTTAACTCGAACTTCCGGGATTCCGATTCCATCCCACAGAGGAAGAGCTTCTCTCGAGTTCTACCTCAAGAGCGTGGTGTTCGGAAAGCGATTGCGCTTCGATATAATCGAGTTTCTGAACATCTACCGTCATGATCCTTGGGACTTGCCTGGATTGTCAAAGATTGGAGAAAGGGAGTGGTACTTTTTCGTGCCCAGGGACAGGAAGCATGGGAGTGGAGGAAGGCCTAACAGAACCACTGAAACTGGGTTTTGGAAAGCGACTGGTTCCGACCGCAAAATTGTGAGCTTATCTGATCCGAAAAGGATTATCGGGTTGAGGAAGACTCTTGTTTTCTACAAAGGGAGAGCACCAAGAGGAACCAAGACTGATTGGGTCATGAATGAGTATCGTTTGCCTGATAACTGCAAATTGCTCAAGGACATAGTACTGTGCAAGATATATAGGAAGGCAACTTCCTTGAAGGTGCTAGAGCAGAGGGCAGCAATGGAGGAAGAGATGAAGATGGGCTTTCATGCCAATTCCCCTAACATTTCCTCGTCCCCTCCAACGTCAATGGACACCACCATGTCATTTTCCAGCTTCCAAGAACAGGAAGCACACCAGCATCATCATGATCTAACTGCGCAAATTCCCATAATTCCCACCAACCTTAAGAAAGAATTAGCAGATGATGCAGCACTAACTCCAGTAGAAGAGCAGCGAAAGGAAGAGGATGTGCAAGCAATGGAGATGAAGGAGTCTCCCACATGTCTTCAGACTCCTTTTGGAAAAGACAAGCTGCCAGAGCTCCTGGTTCCCAAAATGAGCATGGACTGGACCCAAGACCAATTTTGGGCACCCATGAATAGTCCTTGGCTTCTGCCGACCCCTTATGCCAACATTCTCAACATGGAATTACTTTGA

Protein Analysis

322

Amino Acids

37.12

Weight (kDa)

9.16

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 39 - 153 8.8e-36 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17040
fragaria_vesca FvH4_2g16180 FvH4_2g16180
malus_domestica MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica Prupe.8G174800_v2.0.a1
pyrus_communis pycom05g12740 pycom10g11550
rosa_chinensis RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata RLG00000013115
rosa_multiflora Rmu_sc0002340.1_g000019
rosa_roxburghii Rroxscaffold_7G00188620
rosa_rugosa Rorug06G0128400
rosa_samantha Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 690
AccB1I GGYRCC 1 cut(s) 901
AciI CCGC 1 cut(s) 337
AclWI GGATC 2 cut(s) 191, 353
AcsI RAATTY 1 cut(s) 693
AcuI CTGAAG 1 cut(s) 803
AfaI GTAC 2 cut(s) 245, 492
AfiI CCNNNNNNNGG 3 cut(s) 264, 655, 898
AflII CTTAAG 1 cut(s) 716
AflIII ACRYGT 1 cut(s) 812
AgsI TTSAA 2 cut(s) 11, 526
AjnI CCWGG 3 cut(s) 211, 257, 855
AluBI AGCT 5 cut(s) 110, 351, 645, 844, 853
AluI AGCT 5 cut(s) 110, 351, 645, 844, 853
Alw21I GWGCWC 2 cut(s) 415, 855
Alw26I GTCTC 1 cut(s) 810
AlwI GGATC 2 cut(s) 191, 353
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 4 cut(s) 545, 740, 763, 844
ApoI RAATTY 1 cut(s) 693
Asp700I GAANNNNTTC 1 cut(s) 109
AspLEI GCGC 2 cut(s) 159, 691
AspS9I GGNCC 1 cut(s) 882
AsuC2I CCSGG 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 882
BaeGI GKGCMC 2 cut(s) 258, 904
BanI GGYRCC 1 cut(s) 901
BanII GRGCYC 1 cut(s) 855
BbsI GAAGAC 2 cut(s) 392, 809
Bbv12I GWGCWC 2 cut(s) 415, 855
BbvI GCAGC 4 cut(s) 557, 752, 775, 831
BccI CCATC 2 cut(s) 100, 562
BciT130I CCWGG 3 cut(s) 213, 259, 857
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 810
BfaI CTAG 1 cut(s) 533
BfrI CTTAAG 1 cut(s) 716
BisI GCNGC 4 cut(s) 546, 741, 764, 845
BlsI GCNGC 4 cut(s) 547, 742, 765, 846
BmcAI AGTACT 1 cut(s) 492
Bme1390I CCNGG 4 cut(s) 79, 213, 259, 857
Bme18I GGWCC 1 cut(s) 882
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 882
BmiI GGNNCC 5 cut(s) 331, 424, 861, 884, 903
BmrFI CCNGG 4 cut(s) 79, 213, 259, 857
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 2 cut(s) 679, 727
BmuI ACTGGG 1 cut(s) 318
BpiI GAAGAC 2 cut(s) 392, 809
BplI GAGNNNNNCTC 4 cut(s) 99, 131, 373, 405
BpmI CTGGAG 1 cut(s) 735
BpuEI CTTGAG 2 cut(s) 113, 464
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 4 cut(s) 200, 257, 258, 917
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 655, 898
Bse1I ACTGG 4 cut(s) 313, 331, 752, 884
Bse3DI GCAATG 2 cut(s) 555, 795
BseBI CCWGG 3 cut(s) 213, 259, 857
BseDI CCNNGG 4 cut(s) 200, 257, 258, 917
BseGI GGATG 3 cut(s) 52, 92, 784
BseLI CCNNNNNNNGG 3 cut(s) 264, 655, 898
BseMI GCAATG 2 cut(s) 555, 795
BseNI ACTGG 4 cut(s) 313, 331, 752, 884
BseSI GKGCMC 2 cut(s) 258, 904
BseXI GCAGC 4 cut(s) 557, 752, 775, 831
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 289
BshNI GGYRCC 1 cut(s) 901
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 2 cut(s) 415, 855
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 3 cut(s) 218, 275, 589
BslI CCNNNNNNNGG 3 cut(s) 264, 655, 898
BsmAI GTCTC 1 cut(s) 810
BsmFI GGGAC 3 cut(s) 218, 275, 589
BsnI GGCC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 4 cut(s) 258, 415, 855, 904
Bsp143I GATC 3 cut(s) 196, 358, 679
BspACI CCGC 1 cut(s) 337
BspANI GGCC 1 cut(s) 289
BspHI TCATGA 3 cut(s) 193, 441, 676
BspLI GGNNCC 5 cut(s) 331, 424, 861, 884, 903
BspPI GGATC 2 cut(s) 191, 353
BspQI GCTCTTC 2 cut(s) 100, 753
BspT107I GGYRCC 1 cut(s) 901
BspTI CTTAAG 1 cut(s) 716
BsrDI GCAATG 2 cut(s) 555, 795
BsrI ACTGG 4 cut(s) 313, 331, 752, 884
BssECI CCNNGG 4 cut(s) 200, 257, 258, 917
BssMI GATC 3 cut(s) 196, 358, 679
BssT1I CCWWGG 2 cut(s) 200, 917
Bst2UI CCWGG 3 cut(s) 213, 259, 857
Bst4CI ACNGT 2 cut(s) 191, 495
Bst6I CTCTTC 4 cut(s) 100, 552, 753, 768
BstAFI CTTAAG 1 cut(s) 716
BstAPI GCANNNNNTGC 1 cut(s) 737
BstC8I GCNNGC 1 cut(s) 786
BstF5I GGATG 3 cut(s) 52, 92, 784
BstHHI GCGC 2 cut(s) 159, 691
BstKTI GATC 3 cut(s) 199, 361, 682
BstMAI GTCTC 1 cut(s) 810
BstMBI GATC 3 cut(s) 196, 358, 679
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 2 cut(s) 737, 850
BstNI CCWGG 3 cut(s) 213, 259, 857
BstNSI RCATGY 1 cut(s) 816
BstSCI CCNGG 4 cut(s) 77, 211, 257, 855
BstSLI GKGCMC 2 cut(s) 258, 904
BstV1I GCAGC 4 cut(s) 557, 752, 775, 831
BstV2I GAAGAC 2 cut(s) 392, 809
BsuRI GGCC 1 cut(s) 289
BtsCI GGATG 3 cut(s) 52, 92, 784
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 786
CciI TCATGA 3 cut(s) 193, 441, 676
CfoI GCGC 2 cut(s) 159, 691
Cfr13I GGNCC 1 cut(s) 882
Csp6I GTAC 2 cut(s) 244, 491
CviJI RGCY 8 cut(s) 110, 289, 351, 573, 645, 844, 853, 922
CviKI_1 RGCY 8 cut(s) 110, 289, 351, 573, 645, 844, 853, 922
CviQI GTAC 2 cut(s) 244, 491
DpnI GATC 3 cut(s) 198, 360, 681
DpnII GATC 3 cut(s) 196, 358, 679
Eam1104I CTCTTC 4 cut(s) 100, 552, 753, 768
EarI CTCTTC 4 cut(s) 100, 552, 753, 768
Ecl136II GAGCTC 1 cut(s) 853
Eco130I CCWWGG 2 cut(s) 200, 917
Eco147I AGGCCT 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 855
Eco47I GGWCC 1 cut(s) 882
Eco53kI GAGCTC 1 cut(s) 853
Eco57I CTGAAG 1 cut(s) 803
Eco88I CYCGRG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 853
EcoRII CCWGG 3 cut(s) 211, 257, 855
EcoT14I CCWWGG 2 cut(s) 200, 917
EcoT38I GRGCYC 1 cut(s) 855
ErhI CCWWGG 2 cut(s) 200, 917
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FaqI GGGAC 3 cut(s) 218, 275, 589
Fnu4HI GCNGC 4 cut(s) 546, 741, 764, 845
FokI GGATG 3 cut(s) 39, 79, 791
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 4 cut(s) 546, 741, 764, 845
FspBI CTAG 1 cut(s) 533
FspI TGCGCA 1 cut(s) 690
GlaI GCGC 2 cut(s) 158, 690
GluI GCNGC 4 cut(s) 546, 741, 764, 845
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 1 cut(s) 289
HapII CCGG 1 cut(s) 78
HhaI GCGC 2 cut(s) 159, 691
Hin6I GCGC 2 cut(s) 157, 689
HinP1I GCGC 2 cut(s) 157, 689
HinfI GANTC 6 cut(s) 21, 82, 88, 388, 803, 823
HpaII CCGG 1 cut(s) 78
Hpy188I TCNGA 7 cut(s) 87, 146, 180, 334, 358, 363, 822
Hpy188III TCNNGA 5 cut(s) 116, 130, 194, 442, 677
HpyAV CCTTC 4 cut(s) 279, 505, 520, 793
HpyCH4III ACNGT 2 cut(s) 191, 495
HpyCH4IV ACGT 1 cut(s) 614
HpyCH4V TGCA 4 cut(s) 471, 498, 740, 784
HpyF10VI GCNNNNNNNGC 2 cut(s) 737, 850
HpySE526I ACGT 1 cut(s) 614
HspAI GCGC 2 cut(s) 157, 689
Kzo9I GATC 3 cut(s) 196, 358, 679
LguI GCTCTTC 2 cut(s) 100, 753
LmnI GCTCC 1 cut(s) 858
Lsp1109I GCAGC 4 cut(s) 557, 752, 775, 831
LweI GCATC 2 cut(s) 679, 727
MaeI CTAG 1 cut(s) 533
MaeII ACGT 1 cut(s) 614
MalI GATC 3 cut(s) 198, 360, 681
MboI GATC 3 cut(s) 196, 358, 679
MboII GAAGA 7 cut(s) 117, 397, 569, 577, 770, 785, 809
MhlI GDGCHC 4 cut(s) 258, 415, 855, 904
MluCI AATT 8 cut(s) 342, 473, 583, 693, 702, 725, 893, 959
MlyI GAGTC 3 cut(s) 382, 812, 817
MmeI TCCRAC 2 cut(s) 357, 635
MroXI GAANNNNTTC 1 cut(s) 109
MseI TTAA 2 cut(s) 65, 717
MslI CAYNNNNRTG 3 cut(s) 276, 629, 675
MspCI CTTAAG 1 cut(s) 716
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 4 cut(s) 79, 213, 259, 857
MvaI CCWGG 3 cut(s) 213, 259, 857
MwoI GCNNNNNNNGC 2 cut(s) 737, 850
NciI CCSGG 1 cut(s) 79
NdeII GATC 3 cut(s) 196, 358, 679
NlaIV GGNNCC 5 cut(s) 331, 424, 861, 884, 903
NsbI TGCGCA 1 cut(s) 690
NspI RCATGY 1 cut(s) 816
PaeR7I CTCGAG 1 cut(s) 116
PagI TCATGA 3 cut(s) 193, 441, 676
PasI CCCWGGG 1 cut(s) 258
PceI AGGCCT 1 cut(s) 289
PciI ACATGT 1 cut(s) 812
PciSI GCTCTTC 2 cut(s) 100, 753
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 109
PfeI GAWTC 3 cut(s) 21, 82, 88
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 4 cut(s) 547, 742, 765, 846
PleI GAGTC 3 cut(s) 382, 811, 817
PpsI GAGTC 3 cut(s) 382, 811, 817
PscI ACATGT 1 cut(s) 812
Psp124BI GAGCTC 1 cut(s) 855
Psp6I CCWGG 3 cut(s) 211, 257, 855
PspGI CCWGG 3 cut(s) 211, 257, 855
PspN4I GGNNCC 5 cut(s) 331, 424, 861, 884, 903
PspPI GGNCC 1 cut(s) 882
RsaI GTAC 2 cut(s) 245, 492
RsaNI GTAC 2 cut(s) 244, 491
RseI CAYNNNNRTG 3 cut(s) 276, 629, 675
SacI GAGCTC 1 cut(s) 855
SapI GCTCTTC 2 cut(s) 100, 753
SaqAI TTAA 2 cut(s) 65, 717
SatI GCNGC 4 cut(s) 546, 741, 764, 845
Sau3AI GATC 3 cut(s) 196, 358, 679
Sau96I GGNCC 1 cut(s) 882
ScaI AGTACT 1 cut(s) 492
SchI GAGTC 3 cut(s) 382, 812, 817
ScrFI CCNGG 4 cut(s) 79, 213, 259, 857
SduI GDGCHC 4 cut(s) 258, 415, 855, 904
SfaNI GCATC 2 cut(s) 679, 727
Sfr274I CTCGAG 1 cut(s) 116
SinI GGWCC 1 cut(s) 882
SlaI CTCGAG 1 cut(s) 116
SmiMI CAYNNNNRTG 3 cut(s) 276, 629, 675
SmlI CTYRAG 4 cut(s) 116, 128, 479, 716
SmoI CTYRAG 4 cut(s) 116, 128, 479, 716
Sse9I AATT 8 cut(s) 342, 473, 583, 693, 702, 725, 893, 959
SseBI AGGCCT 1 cut(s) 289
SsiI CCGC 1 cut(s) 337
SspMI CTAG 1 cut(s) 533
SstI GAGCTC 1 cut(s) 855
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 4 cut(s) 77, 211, 257, 855
StyI CCWWGG 2 cut(s) 200, 917
TaaI ACNGT 2 cut(s) 191, 495
TaiI ACGT 1 cut(s) 617
TaqI TCGA 4 cut(s) 70, 117, 162, 171
TasI AATT 8 cut(s) 342, 473, 583, 693, 702, 725, 893, 959
TatI WGTACW 1 cut(s) 490
TfiI GAWTC 3 cut(s) 21, 82, 88
Tru1I TTAA 2 cut(s) 65, 717
Tru9I TTAA 2 cut(s) 65, 717
TscAI CASTG 1 cut(s) 307
TseI GCWGC 4 cut(s) 545, 740, 763, 844
TspDTI ATGAA 5 cut(s) 458, 566, 578, 812, 923
TspRI CASTG 1 cut(s) 307
Vha464I CTTAAG 1 cut(s) 716
VpaK11BI GGWCC 1 cut(s) 882
XapI RAATTY 1 cut(s) 693
XceI RCATGY 1 cut(s) 816
XcmI CCANNNNNNNNNTGG 1 cut(s) 871
XhoI CTCGAG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 109
XspI CTAG 1 cut(s) 533
ZrmI AGTACT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.