Rw1G005380
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0010486
Physical Location & Seq
Reverse (-)
10381386 .. 10382549
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005380.1

Sequence Viewer

Length: 963 bp
ATGGCATCTGAAATGACACCACCGGCAGAACTCAAACTTCCGGGATTCCGATTCCATCCCACAGAGGAAGAGCTTCTCGAGTTCTACCTCAAGAGCGTGGTGTTCGGAAAGCGATTGCGCTTCGATATAATCGAGTTTCTGAACATCTACCGTCATGATCCTTGGGACTTGCCTGGATTGTCAAAGATTGGAGAAAGGGAGTGGTACTTTTTTGTGCCCAGGGACAGGAAGCATGGGAGTGGAGGAAGGCCTAACAGAACCACTGAAACTGGGTTTTGGAAAGCGACTGGTTCCGACCGCAAAATTGTGAGCTTATCTGATCCGAAGAGGATTATCGGGTTGAGGAAGACTCTGGTTTTCTACAAAGGGAGAGCACCAAGAGGAACCAAGACTGATTGGGTCATGAATGAGTATCGTTTGCCTGATAACTGCAAATTGCTCAAGGTGAATATTGATGCATCCCAATTTAATTTCTTTGTAGTATGTACTACTTGTCTTCTAGACGGGAATGAAGTTTCCACCTGTGATGAAGTTGAGACGGTGTGTGATGTGTTTCCACAGTTTTTATTCTTAATCCAGGTGCATCATCCTCAATCCAAAGAAAATCTGGAACCAGCGGTTTATTCATTCCAGCCACAAGATTCTACTCTACAGTCAATGATGTACACAATATATGGAGATGCTTTACATAATATTGAATGCAACGATTTGCAATCTTCGCTTGCGAACTATGACTCTTCTGTCACAAAGTTGTTGAATACACACACTGCTGACCAGGATTATTACTCTTCTGATCAAACAACTCAGACTCCTTCCGTAGACTCCAACCTGCCAACGTCACTGAGAAGGGTCTACCTTGGGGATAGTGGAGTAAGCAGGTATGATACAAACACTGAAGTAGCCCATGGAAGTGTACAATATTTGTCTGCATTAGCTATTGGAAATACCCTCCAATGTAGCTAA

Protein Analysis

320

Amino Acids

36.46

Weight (kDa)

5.65

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 140 1.7e-44 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17040
fragaria_vesca FvH4_2g16180 FvH4_2g16180
malus_domestica MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica Prupe.8G174800_v2.0.a1
pyrus_communis pycom05g12740 pycom10g11550
rosa_chinensis RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata RLG00000013115
rosa_multiflora Rmu_sc0002340.1_g000019
rosa_roxburghii Rroxscaffold_7G00188620
rosa_rugosa Rorug06G0128400
rosa_samantha Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 740
Acc36I ACCTGC 2 cut(s) 837, 867
AccI GTMKAC 2 cut(s) 819, 852
AciI CCGC 2 cut(s) 298, 617
AclWI GGATC 2 cut(s) 152, 314
AcuI CTGAAG 1 cut(s) 915
AfaI GTAC 4 cut(s) 206, 487, 665, 915
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 2 cut(s) 698, 757
AjnI CCWGG 4 cut(s) 172, 218, 576, 774
AluBI AGCT 4 cut(s) 73, 312, 935, 960
AluI AGCT 4 cut(s) 73, 312, 935, 960
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 2 cut(s) 152, 314
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 120
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 457
AvaI CYCGRG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 219
BbsI GAAGAC 2 cut(s) 353, 488
Bbv12I GWGCWC 1 cut(s) 376
BccI CCATC 1 cut(s) 63
BciT130I CCWGG 4 cut(s) 174, 220, 578, 776
BclI TGATCA 1 cut(s) 793
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 1 cut(s) 500
BfmI CTRYAG 1 cut(s) 650
BfuAI ACCTGC 2 cut(s) 837, 867
Bme1390I CCNGG 5 cut(s) 42, 174, 220, 578, 776
BmeT110I CYCGRG 1 cut(s) 77
BmiI GGNNCC 3 cut(s) 292, 385, 612
BmrFI CCNGG 5 cut(s) 42, 174, 220, 578, 776
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 5 cut(s) 14, 445, 467, 592, 670
BmuI ACTGGG 1 cut(s) 279
BpiI GAAGAC 2 cut(s) 353, 488
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpuEI CTTGAG 2 cut(s) 74, 425
BpuMI CCSGG 1 cut(s) 42
BsaJI CCNNGG 5 cut(s) 161, 218, 219, 856, 904
BsaXI ACNNNNNCTCC 2 cut(s) 793, 823
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 274, 292
BseBI CCWGG 4 cut(s) 174, 220, 578, 776
BseDI CCNNGG 5 cut(s) 161, 218, 219, 856, 904
BseGI GGATG 3 cut(s) 55, 458, 586
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 818, 833
BseNI ACTGG 2 cut(s) 274, 292
BseSI GKGCMC 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 2 cut(s) 23, 41
BslFI GGGAC 2 cut(s) 179, 236
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 530
BsmBI CGTCTC 1 cut(s) 530
BsmFI GGGAC 2 cut(s) 179, 236
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 1 cut(s) 250
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 219, 376
Bsp1407I TGTACA 2 cut(s) 663, 913
Bsp143I GATC 3 cut(s) 157, 319, 793
Bsp19I CCATGG 1 cut(s) 904
BspACI CCGC 2 cut(s) 298, 617
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 2 cut(s) 817, 834
BspHI TCATGA 2 cut(s) 154, 402
BspLI GGNNCC 3 cut(s) 292, 385, 612
BspMI ACCTGC 2 cut(s) 837, 867
BspPI GGATC 2 cut(s) 152, 314
BspQI GCTCTTC 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 22
BsrGI TGTACA 2 cut(s) 663, 913
BsrI ACTGG 2 cut(s) 274, 292
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 5 cut(s) 161, 218, 219, 856, 904
BssMI GATC 3 cut(s) 157, 319, 793
BssT1I CCWWGG 3 cut(s) 161, 856, 904
Bst2UI CCWGG 4 cut(s) 174, 220, 578, 776
Bst4CI ACNGT 4 cut(s) 152, 541, 561, 654
Bst6I CTCTTC 4 cut(s) 63, 320, 742, 793
BstAUI TGTACA 2 cut(s) 663, 913
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 2 cut(s) 804, 842
BstDSI CCRYGG 1 cut(s) 904
BstF5I GGATG 3 cut(s) 55, 458, 586
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 3 cut(s) 160, 322, 796
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 3 cut(s) 157, 319, 793
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 718
BstNI CCWGG 4 cut(s) 174, 220, 578, 776
BstSCI CCNGG 5 cut(s) 40, 172, 218, 576, 774
BstSFI CTRYAG 1 cut(s) 650
BstSLI GKGCMC 1 cut(s) 219
BstV2I GAAGAC 2 cut(s) 353, 488
BsuRI GGCC 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 904
BtsCI GGATG 3 cut(s) 55, 458, 586
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 4 cut(s) 261, 765, 839, 891
BveI ACCTGC 2 cut(s) 837, 867
Cac8I GCNNGC 1 cut(s) 723
CciI TCATGA 2 cut(s) 154, 402
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 22
Csp6I GTAC 4 cut(s) 205, 486, 664, 914
CviAII CATG 4 cut(s) 155, 233, 403, 905
CviJI RGCY 7 cut(s) 73, 250, 312, 634, 902, 935, 960
CviKI_1 RGCY 7 cut(s) 73, 250, 312, 634, 902, 935, 960
CviQI GTAC 4 cut(s) 205, 486, 664, 914
DdeI CTNAG 2 cut(s) 804, 842
DpnI GATC 3 cut(s) 159, 321, 795
DpnII GATC 3 cut(s) 157, 319, 793
DrdI GACNNNNNNGTC 1 cut(s) 740
DseDI GACNNNNNNGTC 1 cut(s) 740
Eam1104I CTCTTC 4 cut(s) 63, 320, 742, 793
EarI CTCTTC 4 cut(s) 63, 320, 742, 793
Eco130I CCWWGG 3 cut(s) 161, 856, 904
Eco147I AGGCCT 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 915
Eco88I CYCGRG 1 cut(s) 77
EcoRII CCWGG 4 cut(s) 172, 218, 576, 774
EcoT14I CCWWGG 3 cut(s) 161, 856, 904
EcoT22I ATGCAT 1 cut(s) 460
ErhI CCWWGG 3 cut(s) 161, 856, 904
Esp3I CGTCTC 1 cut(s) 530
FaeI CATG 4 cut(s) 158, 236, 406, 908
FaqI GGGAC 2 cut(s) 179, 236
FatI CATG 4 cut(s) 154, 232, 402, 904
FbaI TGATCA 1 cut(s) 793
FblI GTMKAC 2 cut(s) 819, 852
FokI GGATG 3 cut(s) 42, 445, 573
FspBI CTAG 1 cut(s) 500
GlaI GCGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 250
HapII CCGG 2 cut(s) 23, 41
HhaI GCGC 1 cut(s) 120
Hin1II CATG 4 cut(s) 158, 236, 406, 908
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 7 cut(s) 45, 51, 349, 641, 734, 808, 821
HpaII CCGG 2 cut(s) 23, 41
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 4 cut(s) 666, 820, 853, 914
Hpy188I TCNGA 9 cut(s) 10, 50, 107, 141, 295, 319, 324, 793, 807
Hpy188III TCNNGA 6 cut(s) 77, 91, 155, 403, 500, 608
Hpy8I GTNNAC 4 cut(s) 666, 820, 853, 914
HpyAV CCTTC 3 cut(s) 240, 822, 840
HpyCH4III ACNGT 4 cut(s) 152, 541, 561, 654
HpyCH4IV ACGT 1 cut(s) 836
HpyCH4V TGCA 6 cut(s) 432, 458, 583, 702, 712, 929
HpyF10VI GCNNNNNNNGC 1 cut(s) 718
HpyF3I CTNAG 2 cut(s) 804, 842
HpySE526I ACGT 1 cut(s) 836
Hsp92II CATG 4 cut(s) 158, 236, 406, 908
HspAI GCGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 3 cut(s) 157, 319, 793
LguI GCTCTTC 1 cut(s) 63
LweI GCATC 5 cut(s) 14, 445, 467, 592, 670
MaeI CTAG 1 cut(s) 500
MaeII ACGT 1 cut(s) 836
MaeIII GTNAC 2 cut(s) 742, 837
MalI GATC 3 cut(s) 159, 321, 795
MboI GATC 3 cut(s) 157, 319, 793
MboII GAAGA 7 cut(s) 80, 337, 358, 488, 708, 729, 780
MhlI GDGCHC 2 cut(s) 219, 376
MluCI AATT 4 cut(s) 303, 434, 464, 469
MlyI GAGTC 4 cut(s) 343, 728, 802, 815
MmeI TCCRAC 2 cut(s) 318, 849
MnlI CCTC 8 cut(s) 58, 98, 236, 321, 336, 374, 600, 959
Mph1103I ATGCAT 1 cut(s) 460
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 2 cut(s) 468, 572
MslI CAYNNNNRTG 2 cut(s) 237, 909
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 2 cut(s) 23, 41
MspR9I CCNGG 5 cut(s) 42, 174, 220, 578, 776
Mva1269I GAATGC 1 cut(s) 704
MvaI CCWGG 4 cut(s) 174, 220, 578, 776
MwoI GCNNNNNNNGC 1 cut(s) 718
NciI CCSGG 1 cut(s) 42
NcoI CCATGG 1 cut(s) 904
NdeII GATC 3 cut(s) 157, 319, 793
NlaIII CATG 4 cut(s) 158, 236, 406, 908
NlaIV GGNNCC 3 cut(s) 292, 385, 612
NmuCI GTSAC 2 cut(s) 742, 837
NsiI ATGCAT 1 cut(s) 460
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 2 cut(s) 154, 402
PasI CCCWGGG 1 cut(s) 219
PceI AGGCCT 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PctI GAATGC 1 cut(s) 704
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 3 cut(s) 45, 51, 641
PfoI TCCNGGA 1 cut(s) 40
PleI GAGTC 4 cut(s) 343, 728, 802, 815
PpsI GAGTC 4 cut(s) 343, 728, 802, 815
Psp6I CCWGG 4 cut(s) 172, 218, 576, 774
PspGI CCWGG 4 cut(s) 172, 218, 576, 774
PspN4I GGNNCC 3 cut(s) 292, 385, 612
RsaI GTAC 4 cut(s) 206, 487, 665, 915
RsaNI GTAC 4 cut(s) 205, 486, 664, 914
RseI CAYNNNNRTG 2 cut(s) 237, 909
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 468, 572
Sau3AI GATC 3 cut(s) 157, 319, 793
SchI GAGTC 4 cut(s) 343, 728, 802, 815
ScrFI CCNGG 5 cut(s) 42, 174, 220, 578, 776
SduI GDGCHC 2 cut(s) 219, 376
SfaNI GCATC 5 cut(s) 14, 445, 467, 592, 670
SfcI CTRYAG 1 cut(s) 650
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 237, 909
SmlI CTYRAG 3 cut(s) 77, 89, 440
SmoI CTYRAG 3 cut(s) 77, 89, 440
Sse9I AATT 4 cut(s) 303, 434, 464, 469
SseBI AGGCCT 1 cut(s) 250
SsiI CCGC 2 cut(s) 298, 617
SspI AATATT 3 cut(s) 451, 694, 920
SspMI CTAG 1 cut(s) 500
StuI AGGCCT 1 cut(s) 250
StyD4I CCNGG 5 cut(s) 40, 172, 218, 576, 774
StyI CCWWGG 3 cut(s) 161, 856, 904
TaaI ACNGT 4 cut(s) 152, 541, 561, 654
TaiI ACGT 1 cut(s) 839
TaqI TCGA 3 cut(s) 78, 123, 132
TasI AATT 4 cut(s) 303, 434, 464, 469
TatI WGTACW 3 cut(s) 485, 663, 913
TfiI GAWTC 3 cut(s) 45, 51, 641
Tru1I TTAA 2 cut(s) 468, 572
Tru9I TTAA 2 cut(s) 468, 572
TscAI CASTG 4 cut(s) 268, 772, 846, 898
TseFI GTSAC 2 cut(s) 742, 837
Tsp45I GTSAC 2 cut(s) 742, 837
TspDTI ATGAA 4 cut(s) 419, 525, 543, 615
TspGWI ACGGA 1 cut(s) 805
TspRI CASTG 4 cut(s) 268, 772, 846, 898
XbaI TCTAGA 1 cut(s) 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XhoI CTCGAG 1 cut(s) 77
XmiI GTMKAC 2 cut(s) 819, 852
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.