Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010486

Physical Location & Seq

Genomic Coordinates Forward (+)

15091543 .. 15092366

Gene Structure 824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCAGCCAACACCATAGATCCTGATCACCAAATGACCCCAGAATTCGAACTTCCAGGGTTTCGATTCCATCCCACAGAAGAAGAACTCCTTGAATTCTACCTGAAAAGTATGGTTTTTGGCAAGAGATTGCGTTTTGACATAATTGGTTTTCTCAATATCTACCATCATGACCCTTGGGACTTACCTGGGTTGTCAAAGATTGGAGAAAGGGAGTGGTATTTTTTTGTGCCCAGGGACAGGAAGCATGGCAGTGGAGGAAGGCCTAACAGAACCACTGAAACTGGGTTTTGGAAAGCCACAGGCTCTGACCGGAAGATTGTGAGCCTCTCGAATCCAAAGAGGATCATAGGGTTGAGAAAGACTCTTGTTTTTTACAAAGGGAGAGCTCCAAGAGGAAGTAAGACCGATTGGGTCATGAACGAGTATCGTTTGCCTGATAACTGCCAGTATCTCAAATGTGCTGTGCAAGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

160

Amino Acids

18.65

Weight (kDa)

9.27

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17040
fragaria_vesca	FvH4_2g16180 FvH4_2g16180
malus_domestica	MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica	Prupe.8G174800_v2.0.a1
pyrus_communis	pycom05g12740 pycom10g11550
rosa_chinensis	RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata	RLG00000013115
rosa_multiflora	Rmu_sc0002340.1_g000019
rosa_roxburghii	Rroxscaffold_7G00188620
rosa_rugosa	Rorug06G0128400
rosa_samantha	Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana	Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	14, 353
AcsI	RAATTY	2 cut(s)	44, 95
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	3 cut(s)	55, 187, 233
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw21I	GWGCWC	1 cut(s)	391
AlwI	GGATC	2 cut(s)	14, 353
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	44, 95
AsuHPI	GGTGA	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	78, 174
BciT130I	CCWGG	3 cut(s)	57, 189, 235
BclI	TGATCA	1 cut(s)	25
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	3 cut(s)	57, 189, 235
BmrFI	CCNGG	3 cut(s)	57, 189, 235
BmrI	ACTGGG	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	294
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
Bpu14I	TTCGAA	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	5 cut(s)	56, 176, 188, 233, 234
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	2 cut(s)	289, 448
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	3 cut(s)	57, 189, 235
BseDI	CCNNGG	5 cut(s)	56, 176, 188, 233, 234
BseGI	GGATG	1 cut(s)	70
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	289, 448
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	2 cut(s)	194, 251
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmFI	GGGAC	2 cut(s)	194, 251
BsnI	GGCC	1 cut(s)	265
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	234, 391
Bsp143I	GATC	3 cut(s)	19, 25, 345
BspANI	GGCC	1 cut(s)	265
BspHI	TCATGA	2 cut(s)	169, 417
BspPI	GGATC	2 cut(s)	14, 353
BspT104I	TTCGAA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	289, 448
BssECI	CCNNGG	5 cut(s)	56, 176, 188, 233, 234
BssMI	GATC	3 cut(s)	19, 25, 345
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	3 cut(s)	57, 189, 235
BstBI	TTCGAA	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	3 cut(s)	22, 28, 348
BstMBI	GATC	3 cut(s)	19, 25, 345
BstNI	CCWGG	3 cut(s)	57, 189, 235
BstSCI	CCNGG	3 cut(s)	55, 187, 233
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	259, 276
CaiI	CAGNNNCTG	1 cut(s)	308
CciI	TCATGA	2 cut(s)	169, 417
CviAII	CATG	3 cut(s)	170, 248, 418
CviJI	RGCY	6 cut(s)	8, 265, 299, 306, 327, 389
CviKI_1	RGCY	6 cut(s)	8, 265, 299, 306, 327, 389
DpnI	GATC	3 cut(s)	21, 27, 347
DpnII	GATC	3 cut(s)	19, 25, 345
Ecl136II	GAGCTC	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	176
Eco147I	AGGCCT	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	389
EcoRI	GAATTC	2 cut(s)	44, 95
EcoRII	CCWGG	3 cut(s)	55, 187, 233
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	3 cut(s)	173, 251, 421
FaiI	YATR	9 cut(s)	17, 113, 143, 171, 249, 350, 419, 476, 478
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	2 cut(s)	194, 251
FatI	CATG	3 cut(s)	169, 247, 417
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	1 cut(s)	313
Hin1II	CATG	3 cut(s)	173, 251, 421
HinfI	GANTC	3 cut(s)	66, 334, 364
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	4 cut(s)	23, 170, 331, 418
HpyAV	CCTTC	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	469
Hsp92II	CATG	3 cut(s)	173, 251, 421
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	19, 25, 345
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	1 cut(s)	17
MalI	GATC	3 cut(s)	21, 27, 347
MboI	GATC	3 cut(s)	19, 25, 345
MboII	GAAGA	3 cut(s)	92, 95, 328
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	234, 391
MluCI	AATT	3 cut(s)	44, 95, 144
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	4 cut(s)	251, 336, 338, 389
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	3 cut(s)	57, 189, 235
MvaI	CCWGG	3 cut(s)	57, 189, 235
NdeII	GATC	3 cut(s)	19, 25, 345
NlaIII	CATG	3 cut(s)	173, 251, 421
NspV	TTCGAA	1 cut(s)	48
PagI	TCATGA	2 cut(s)	169, 417
PasI	CCCWGGG	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	66, 334
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	391
Psp6I	CCWGG	3 cut(s)	55, 187, 233
PspGI	CCWGG	3 cut(s)	55, 187, 233
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	391
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	19, 25, 345
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	3 cut(s)	57, 189, 235
SduI	GDGCHC	2 cut(s)	234, 391
SetI	ASST	3 cut(s)	105, 190, 391
SfuI	TTCGAA	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	44, 95, 144
SseBI	AGGCCT	1 cut(s)	265
SstI	GAGCTC	1 cut(s)	391
StuI	AGGCCT	1 cut(s)	265
StyD4I	CCNGG	3 cut(s)	55, 187, 233
StyI	CCWWGG	1 cut(s)	176
TaqI	TCGA	3 cut(s)	48, 64, 332
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	3 cut(s)	44, 95, 144
TfiI	GAWTC	2 cut(s)	66, 334
TscAI	CASTG	2 cut(s)	259, 283
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	434
TspRI	CASTG	2 cut(s)	259, 283
XapI	RAATTY	2 cut(s)	44, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.