Rh1CG065600
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010486
Physical Location & Seq
Reverse (-)
13354595 .. 13363497
8903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG065600.1

Sequence Viewer

Length: 633 bp
ATGGCATCTGAAATGACACCACCGGCAGAACTCGAACTTTCGGGATTCCGATTCCATCCCACAGAGGAAAAGCTTCTCGAGTTCTACCGTCATGATCCTTGGGACTTGCCTGGGTTGTCAAAGATTGGAGAAAGGGAGTGGTACTTTTTTGTGCCCAGGGACAGGAAGCATGGGAGTGGAGGAAGGCCTAACAGAACCACTGAAACTGGGTTTTGGAAAGCGACTGGTTCCGACAGCAAAATTGTGAGCTTATCTGATCCGAAGAGGATTATCGGGTTGAGGAAGACTCTGGTTTTCTACAAAGGGAGAGCACCAAGAGGAACCAAGACTGATTGGGTCATGAATGAGTATCGTTTGCCTGATAACTGCAAATTGCTCAAGAAGCCCATGGATAGGCTTTTGAAGGAATTGAAGATGAAGCTTTTCAAATATGAGATATCAATGCTTGTACTAACTATTCCCGGAGGAAGTGGGAAAACTGCACTGGCAACAAAGTTTTGTCAAGATGGAGAAGTCAGAGATAAATTCAAGAACAATATCTTCTTTGTAACTGTTTCCAACAAGCCCAACTTAGACCTTATTGTACAAGAGAACGCAAAGGTTACCAGATACCCGATTTCCAAAATGAAGTAA

Protein Analysis

210

Amino Acids

24.26

Weight (kDa)

9.78

Isoelectric Point (pI)

21.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 27 - 119 3.4e-30 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17040
fragaria_vesca FvH4_2g16180 FvH4_2g16180
malus_domestica MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica Prupe.8G174800_v2.0.a1
pyrus_communis pycom05g12740 pycom10g11550
rosa_chinensis RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata RLG00000013115
rosa_multiflora Rmu_sc0002340.1_g000019
rosa_roxburghii Rroxscaffold_7G00188620
rosa_rugosa Rorug06G0128400
rosa_samantha Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 89, 251
AcsI RAATTY 1 cut(s) 524
AfaI GTAC 3 cut(s) 143, 450, 585
AfiI CCNNNNNNNGG 2 cut(s) 162, 393
AgsI TTSAA 4 cut(s) 403, 412, 427, 529
AjnI CCWGG 2 cut(s) 109, 155
AluBI AGCT 3 cut(s) 73, 249, 421
AluI AGCT 3 cut(s) 73, 249, 421
Alw21I GWGCWC 1 cut(s) 313
AlwI GGATC 2 cut(s) 89, 251
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 524
Asp700I GAANNNNTTC 2 cut(s) 72, 422
AsuC2I CCSGG 1 cut(s) 462
AvaI CYCGRG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 313
BccI CCATC 2 cut(s) 63, 500
BciT130I CCWGG 2 cut(s) 111, 157
BcnI CCSGG 1 cut(s) 462
Bme1390I CCNGG 3 cut(s) 111, 157, 462
BmeT110I CYCGRG 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 229, 322
BmrFI CCNGG 3 cut(s) 111, 157, 462
BmrI ACTGGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 271, 303
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 462
BsaJI CCNNGG 5 cut(s) 98, 110, 155, 156, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 393
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 3 cut(s) 211, 229, 489
BseBI CCWGG 2 cut(s) 111, 157
BseDI CCNNGG 5 cut(s) 98, 110, 155, 156, 387
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 2 cut(s) 162, 393
BseNI ACTGG 3 cut(s) 211, 229, 489
BseSI GKGCMC 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 465
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 2 cut(s) 23, 462
BslFI GGGAC 2 cut(s) 116, 173
BslI CCNNNNNNNGG 2 cut(s) 162, 393
BsmFI GGGAC 2 cut(s) 116, 173
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 156, 313
Bsp1407I TGTACA 1 cut(s) 583
Bsp143I GATC 2 cut(s) 94, 256
Bsp19I CCATGG 1 cut(s) 387
BspANI GGCC 1 cut(s) 187
BspHI TCATGA 2 cut(s) 91, 339
BspLI GGNNCC 2 cut(s) 229, 322
BspPI GGATC 2 cut(s) 89, 251
BsrFI RCCGGY 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 583
BsrI ACTGG 3 cut(s) 211, 229, 489
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 5 cut(s) 98, 110, 155, 156, 387
BssMI GATC 2 cut(s) 94, 256
BssT1I CCWWGG 2 cut(s) 98, 387
Bst2UI CCWGG 2 cut(s) 111, 157
Bst4CI ACNGT 2 cut(s) 89, 553
Bst6I CTCTTC 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 583
BstDEI CTNAG 1 cut(s) 571
BstDSI CCRYGG 1 cut(s) 387
BstEII GGTNACC 1 cut(s) 601
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 2 cut(s) 97, 259
BstMBI GATC 2 cut(s) 94, 256
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstNI CCWGG 2 cut(s) 111, 157
BstPI GGTNACC 1 cut(s) 601
BstSCI CCNGG 3 cut(s) 109, 155, 460
BstSLI GKGCMC 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 198, 482
CciI TCATGA 2 cut(s) 91, 339
Cfr10I RCCGGY 1 cut(s) 22
Csp6I GTAC 3 cut(s) 142, 449, 584
CviAII CATG 4 cut(s) 92, 170, 340, 388
CviJI RGCY 7 cut(s) 73, 187, 249, 385, 397, 421, 565
CviKI_1 RGCY 7 cut(s) 73, 187, 249, 385, 397, 421, 565
CviQI GTAC 3 cut(s) 142, 449, 584
DdeI CTNAG 1 cut(s) 571
DpnI GATC 2 cut(s) 96, 258
DpnII GATC 2 cut(s) 94, 256
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 98, 387
Eco147I AGGCCT 1 cut(s) 187
Eco32I GATATC 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 77
Eco91I GGTNACC 1 cut(s) 601
EcoO65I GGTNACC 1 cut(s) 601
EcoRII CCWGG 2 cut(s) 109, 155
EcoRV GATATC 1 cut(s) 438
EcoT14I CCWWGG 2 cut(s) 98, 387
ErhI CCWWGG 2 cut(s) 98, 387
FaeI CATG 4 cut(s) 95, 173, 343, 391
FaiI YATR 5 cut(s) 93, 171, 341, 389, 432
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FaqI GGGAC 2 cut(s) 116, 173
FatI CATG 4 cut(s) 91, 169, 339, 387
FokI GGATG 1 cut(s) 42
HaeIII GGCC 1 cut(s) 187
HapII CCGG 2 cut(s) 23, 462
Hin1II CATG 4 cut(s) 95, 173, 343, 391
HindIII AAGCTT 2 cut(s) 71, 419
HinfI GANTC 3 cut(s) 45, 51, 286
HpaII CCGG 2 cut(s) 23, 462
Hpy188I TCNGA 6 cut(s) 10, 50, 232, 256, 261, 518
Hpy188III TCNNGA 7 cut(s) 42, 77, 92, 340, 379, 503, 529
HpyAV CCTTC 2 cut(s) 177, 397
HpyCH4III ACNGT 2 cut(s) 89, 553
HpyCH4V TGCA 2 cut(s) 369, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 1 cut(s) 571
Hsp92II CATG 4 cut(s) 95, 173, 343, 391
Kzo9I GATC 2 cut(s) 94, 256
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 547, 601
MalI GATC 2 cut(s) 96, 258
MboI GATC 2 cut(s) 94, 256
MboII GAAGA 4 cut(s) 274, 295, 424, 532
MhlI GDGCHC 2 cut(s) 156, 313
MluCI AATT 4 cut(s) 240, 371, 407, 524
MlyI GAGTC 1 cut(s) 280
MmeI TCCRAC 2 cut(s) 255, 582
MnlI CCTC 6 cut(s) 58, 173, 258, 273, 311, 458
MroXI GAANNNNTTC 2 cut(s) 72, 422
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 2 cut(s) 23, 462
MspR9I CCNGG 3 cut(s) 111, 157, 462
MvaI CCWGG 2 cut(s) 111, 157
MwoI GCNNNNNNNGC 1 cut(s) 382
NciI CCSGG 1 cut(s) 462
NcoI CCATGG 1 cut(s) 387
NdeII GATC 2 cut(s) 94, 256
NlaIII CATG 4 cut(s) 95, 173, 343, 391
NlaIV GGNNCC 2 cut(s) 229, 322
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 2 cut(s) 91, 339
PasI CCCWGGG 1 cut(s) 156
PceI AGGCCT 1 cut(s) 187
PdmI GAANNNNTTC 2 cut(s) 72, 422
PfeI GAWTC 2 cut(s) 45, 51
PfoI TCCNGGA 1 cut(s) 460
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Psp6I CCWGG 2 cut(s) 109, 155
PspEI GGTNACC 1 cut(s) 601
PspGI CCWGG 2 cut(s) 109, 155
PspN4I GGNNCC 2 cut(s) 229, 322
RsaI GTAC 3 cut(s) 143, 450, 585
RsaNI GTAC 3 cut(s) 142, 449, 584
RseI CAYNNNNRTG 1 cut(s) 174
Sau3AI GATC 2 cut(s) 94, 256
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 3 cut(s) 111, 157, 462
SduI GDGCHC 2 cut(s) 156, 313
SetI ASST 5 cut(s) 75, 251, 423, 579, 603
SfaNI GCATC 1 cut(s) 14
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 2 cut(s) 77, 377
SmoI CTYRAG 2 cut(s) 77, 377
Sse9I AATT 4 cut(s) 240, 371, 407, 524
SseBI AGGCCT 1 cut(s) 187
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 3 cut(s) 109, 155, 460
StyI CCWWGG 2 cut(s) 98, 387
TaaI ACNGT 2 cut(s) 89, 553
TaqI TCGA 2 cut(s) 33, 78
TasI AATT 4 cut(s) 240, 371, 407, 524
TatI WGTACW 2 cut(s) 448, 583
TfiI GAWTC 2 cut(s) 45, 51
TscAI CASTG 2 cut(s) 205, 489
TspDTI ATGAA 2 cut(s) 356, 431
TspRI CASTG 2 cut(s) 205, 489
XapI RAATTY 1 cut(s) 524
XhoI CTCGAG 1 cut(s) 77
XmnI GAANNNNTTC 2 cut(s) 72, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.