pycom05g12740
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010486
Physical Location & Seq
Forward (+)
16237206 .. 16238239
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g12740.1

Sequence Viewer

Length: 510 bp
ATGGCAGCCAACACCATAAATCCTGATCATGAAATGACTCCGGAATTCGAACTTCCGGGATTTCGGTTCCATCCAACAGAAGAAGAACTTCTTGAATTCTACCTTAAAAACATGGTTTTTGGCAAAAGGTTGCGTTTTGACATAATTGGATTCCTCAATATCTACCATCATGACCCTTGGGACTTGCCTGGGTTGTCAAAGATCGGAGAAAGGGAGTGGTATTTTTTTGTGCCAAGGGACAGGAAGCATGGCAGTGGAGGAAGGCCTAACAGAACCACTGAAACTGGGTTTTGGAAAGCCACCGGCTCTGACCGCAAGATCGTGAGCCTCTCGGAGCCAAAGAGATCGATCATAGGGTTGAGAAAGACACTTGTTTTTTACAAAGGGAGAGCCCCAAGAGGAAGCAAGACTGATTGGGTCATGAATGAGTATCGTTTGCCTGATAACTGCCAGTATCTCAAGGTAATTACTTTGTACTATGCAAGATATATAGAAAGGCAACATCCTTGA

Protein Analysis

170

Amino Acids

20.06

Weight (kDa)

9.43

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 146 4.4e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17040
fragaria_vesca FvH4_2g16180 FvH4_2g16180
malus_domestica MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica Prupe.8G174800_v2.0.a1
pyrus_communis pycom05g12740 pycom10g11550
rosa_chinensis RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata RLG00000013115
rosa_multiflora Rmu_sc0002340.1_g000019
rosa_roxburghii Rroxscaffold_7G00188620
rosa_rugosa Rorug06G0128400
rosa_samantha Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 1 cut(s) 313
AcsI RAATTY 2 cut(s) 44, 95
AfaI GTAC 1 cut(s) 476
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 187
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 44, 95
Asp700I GAANNNNTTC 1 cut(s) 87
AsuC2I CCSGG 1 cut(s) 57
AsuII TTCGAA 1 cut(s) 48
BanII GRGCYC 1 cut(s) 394
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 78, 174
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 57
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 57, 189
BmiI GGNNCC 2 cut(s) 68, 336
BmrFI CCNGG 2 cut(s) 57, 189
BmrI ACTGGG 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 176, 188, 233
BsaWI WCCGGW 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 289, 451
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 347
BseDI CCNNGG 3 cut(s) 176, 188, 233
BseGI GGATG 2 cut(s) 70, 502
BseNI ACTGG 2 cut(s) 289, 451
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 347
BsiSI CCGG 3 cut(s) 41, 56, 303
BslFI GGGAC 2 cut(s) 194, 251
BsmFI GGGAC 2 cut(s) 194, 251
BsnI GGCC 1 cut(s) 265
Bsp119I TTCGAA 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 394
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 5 cut(s) 25, 201, 318, 344, 348
BspACI CCGC 1 cut(s) 313
BspANI GGCC 1 cut(s) 265
BspDI ATCGAT 1 cut(s) 347
BspEI TCCGGA 1 cut(s) 40
BspHI TCATGA 3 cut(s) 28, 169, 420
BspLI GGNNCC 2 cut(s) 68, 336
BspT104I TTCGAA 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 2 cut(s) 289, 451
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 176, 188, 233
BssMI GATC 5 cut(s) 25, 201, 318, 344, 348
BssT1I CCWWGG 2 cut(s) 176, 233
Bst2UI CCWGG 1 cut(s) 189
BstBI TTCGAA 1 cut(s) 48
BstF5I GGATG 2 cut(s) 70, 502
BstKTI GATC 5 cut(s) 28, 204, 321, 347, 351
BstMBI GATC 5 cut(s) 25, 201, 318, 344, 348
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 55, 187
BstV1I GCAGC 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 347
BsuRI GGCC 1 cut(s) 265
BsuTUI ATCGAT 1 cut(s) 347
BtsCI GGATG 2 cut(s) 70, 502
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 259, 276
CciI TCATGA 3 cut(s) 28, 169, 420
Cfr10I RCCGGY 1 cut(s) 302
ClaI ATCGAT 1 cut(s) 347
Csp6I GTAC 1 cut(s) 475
CviAII CATG 5 cut(s) 29, 112, 170, 248, 421
CviJI RGCY 7 cut(s) 8, 265, 299, 306, 327, 337, 392
CviKI_1 RGCY 7 cut(s) 8, 265, 299, 306, 327, 337, 392
CviQI GTAC 1 cut(s) 475
DpnI GATC 5 cut(s) 27, 203, 320, 346, 350
DpnII GATC 5 cut(s) 25, 201, 318, 344, 348
Eco130I CCWWGG 2 cut(s) 176, 233
Eco147I AGGCCT 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 394
EcoRI GAATTC 2 cut(s) 44, 95
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 176, 233
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 2 cut(s) 176, 233
FaeI CATG 5 cut(s) 32, 115, 173, 251, 424
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 75, 107
FaqI GGGAC 2 cut(s) 194, 251
FatI CATG 5 cut(s) 28, 111, 169, 247, 420
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 57, 489
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 265
HapII CCGG 3 cut(s) 41, 56, 303
Hin1II CATG 5 cut(s) 32, 115, 173, 251, 424
HinfI GANTC 2 cut(s) 37, 150
HpaII CCGG 3 cut(s) 41, 56, 303
Hpy188I TCNGA 3 cut(s) 206, 310, 334
Hpy188III TCNNGA 7 cut(s) 23, 29, 41, 92, 170, 322, 421
HpyAV CCTTC 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
Hsp92II CATG 5 cut(s) 32, 115, 173, 251, 424
Kpn2I TCCGGA 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 5 cut(s) 25, 201, 318, 344, 348
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 1 cut(s) 17
MalI GATC 5 cut(s) 27, 203, 320, 346, 350
MboI GATC 5 cut(s) 25, 201, 318, 344, 348
MboII GAAGA 2 cut(s) 92, 95
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 4 cut(s) 44, 95, 144, 465
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 4 cut(s) 164, 251, 338, 392
MroI TCCGGA 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 3 cut(s) 41, 56, 303
MspR9I CCNGG 2 cut(s) 57, 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 312
NciI CCSGG 1 cut(s) 57
NdeII GATC 5 cut(s) 25, 201, 318, 344, 348
NlaIII CATG 5 cut(s) 32, 115, 173, 251, 424
NlaIV GGNNCC 2 cut(s) 68, 336
NspV TTCGAA 1 cut(s) 48
PagI TCATGA 3 cut(s) 28, 169, 420
PceI AGGCCT 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 150
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 68, 336
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 25, 201, 318, 344, 348
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 57, 189
SduI GDGCHC 1 cut(s) 394
SetI ASST 3 cut(s) 105, 131, 465
SfuI TTCGAA 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 4 cut(s) 44, 95, 144, 465
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 1 cut(s) 313
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 2 cut(s) 55, 187
StyI CCWWGG 2 cut(s) 176, 233
TaqI TCGA 2 cut(s) 48, 347
TasI AATT 4 cut(s) 44, 95, 144, 465
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 259, 283
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 45, 437
TspRI CASTG 2 cut(s) 259, 283
XapI RAATTY 2 cut(s) 44, 95
XmnI GAANNNNTTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.