RchiOBHm_Chr1g0324811
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010486
Physical Location & Seq
Reverse (-)
12570812 .. 12571432
621 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55463

Sequence Viewer

Length: 501 bp
ATGGCATCTGAAATGACACCACCGGCAGAACTCAAACTTCCGGGATTCCGATTCCATCCCACAGAGGAAGAGCTTCTCGAGTTCTACCTCAAGAGCGTGGTGTTCGGAAAGCGATTGCGCTTCGATATAATCGAGTTTCTGAACATCTACCGTCATGATCCTTGGGACTTGCCTGGATTGTCAAAGTTTGGAGAAAGGGAGTGGTACTTTTTTGTGCCCAGGGACAGGAACCATGGGAGTGGAGGAAGGCCTAACAGAACCACTGAAACTGGGTTTTGGAAAGCGACTGGTTCCGACCGCAAAATTGTGAGCTTATCTGATCCGAAGAGGATTATCGGGTTGAGGAAGACTCTGGTTTTCTACAAAGGGAGAGCACCAAGAGGAACCAAGACTGATTGGGTCATGAATGAGTATCGTTTGCCTGATAACTGCAAATTGCTCAAGGTAAATATTGATGCATCCCAATTTAATTTCTTTGTAGTATGTACTACTAGCCATTAA

Protein Analysis

166

Amino Acids

19.44

Weight (kDa)

9.54

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 140 8.7e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17040
fragaria_vesca FvH4_2g16180 FvH4_2g16180
malus_domestica MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica Prupe.8G174800_v2.0.a1
pyrus_communis pycom05g12740 pycom10g11550
rosa_chinensis RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata RLG00000013115
rosa_multiflora Rmu_sc0002340.1_g000019
rosa_roxburghii Rroxscaffold_7G00188620
rosa_rugosa Rorug06G0128400
rosa_samantha Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 152, 314
AfaI GTAC 2 cut(s) 206, 487
AfiI CCNNNNNNNGG 1 cut(s) 225
AjnI CCWGG 2 cut(s) 172, 218
AluBI AGCT 2 cut(s) 73, 312
AluI AGCT 2 cut(s) 73, 312
Alw21I GWGCWC 1 cut(s) 376
AlwI GGATC 2 cut(s) 152, 314
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 120
AsuC2I CCSGG 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 376
BccI CCATC 1 cut(s) 63
BciT130I CCWGG 2 cut(s) 174, 220
BcnI CCSGG 1 cut(s) 42
BfaI CTAG 1 cut(s) 492
Bme1390I CCNGG 3 cut(s) 42, 174, 220
BmeT110I CYCGRG 1 cut(s) 77
BmiI GGNNCC 3 cut(s) 230, 292, 385
BmrFI CCNGG 3 cut(s) 42, 174, 220
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 3 cut(s) 14, 445, 467
BmuI ACTGGG 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 353
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpuEI CTTGAG 2 cut(s) 74, 425
BpuMI CCSGG 1 cut(s) 42
BsaJI CCNNGG 4 cut(s) 161, 218, 219, 232
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 274, 292
BseBI CCWGG 2 cut(s) 174, 220
BseDI CCNNGG 4 cut(s) 161, 218, 219, 232
BseGI GGATG 2 cut(s) 55, 458
BseLI CCNNNNNNNGG 1 cut(s) 225
BseNI ACTGG 2 cut(s) 274, 292
BseSI GKGCMC 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 2 cut(s) 23, 41
BslFI GGGAC 2 cut(s) 179, 236
BslI CCNNNNNNNGG 1 cut(s) 225
BsmFI GGGAC 2 cut(s) 179, 236
BsnI GGCC 1 cut(s) 250
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 219, 376
Bsp143I GATC 2 cut(s) 157, 319
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 250
BspHI TCATGA 2 cut(s) 154, 402
BspLI GGNNCC 3 cut(s) 230, 292, 385
BspPI GGATC 2 cut(s) 152, 314
BspQI GCTCTTC 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 2 cut(s) 274, 292
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 4 cut(s) 161, 218, 219, 232
BssMI GATC 2 cut(s) 157, 319
BssT1I CCWWGG 2 cut(s) 161, 232
Bst2UI CCWGG 2 cut(s) 174, 220
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 2 cut(s) 63, 320
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 2 cut(s) 55, 458
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 160, 322
BstMBI GATC 2 cut(s) 157, 319
BstMCI CGRYCG 1 cut(s) 298
BstNI CCWGG 2 cut(s) 174, 220
BstSCI CCNGG 3 cut(s) 40, 172, 218
BstSLI GKGCMC 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 353
BstXI CCANNNNNNTGG 1 cut(s) 239
BsuRI GGCC 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 2 cut(s) 55, 458
BtsIMutI CAGTG 1 cut(s) 261
CciI TCATGA 2 cut(s) 154, 402
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 22
Csp6I GTAC 2 cut(s) 205, 486
CviAII CATG 3 cut(s) 155, 233, 403
CviJI RGCY 4 cut(s) 73, 250, 312, 495
CviKI_1 RGCY 4 cut(s) 73, 250, 312, 495
CviQI GTAC 2 cut(s) 205, 486
DpnI GATC 2 cut(s) 159, 321
DpnII GATC 2 cut(s) 157, 319
Eam1104I CTCTTC 2 cut(s) 63, 320
EarI CTCTTC 2 cut(s) 63, 320
Eco130I CCWWGG 2 cut(s) 161, 232
Eco147I AGGCCT 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 172, 218
EcoT14I CCWWGG 2 cut(s) 161, 232
EcoT22I ATGCAT 1 cut(s) 460
ErhI CCWWGG 2 cut(s) 161, 232
FaeI CATG 3 cut(s) 158, 236, 406
FaiI YATR 5 cut(s) 128, 156, 234, 404, 484
FaqI GGGAC 2 cut(s) 179, 236
FatI CATG 3 cut(s) 154, 232, 402
FokI GGATG 2 cut(s) 42, 445
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 250
HapII CCGG 2 cut(s) 23, 41
HhaI GCGC 1 cut(s) 120
Hin1II CATG 3 cut(s) 158, 236, 406
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 3 cut(s) 45, 51, 349
HpaII CCGG 2 cut(s) 23, 41
Hpy188I TCNGA 7 cut(s) 10, 50, 107, 141, 295, 319, 324
Hpy188III TCNNGA 4 cut(s) 77, 91, 155, 403
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 432, 458
Hsp92II CATG 3 cut(s) 158, 236, 406
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 157, 319
LguI GCTCTTC 1 cut(s) 63
LweI GCATC 3 cut(s) 14, 445, 467
MaeI CTAG 1 cut(s) 492
MalI GATC 2 cut(s) 159, 321
MboI GATC 2 cut(s) 157, 319
MboII GAAGA 3 cut(s) 80, 337, 358
MhlI GDGCHC 2 cut(s) 219, 376
MluCI AATT 4 cut(s) 303, 434, 464, 469
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 6 cut(s) 58, 98, 236, 321, 336, 374
Mph1103I ATGCAT 1 cut(s) 460
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 2 cut(s) 468, 499
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 2 cut(s) 23, 41
MspR9I CCNGG 3 cut(s) 42, 174, 220
MvaI CCWGG 2 cut(s) 174, 220
NciI CCSGG 1 cut(s) 42
NcoI CCATGG 1 cut(s) 232
NdeII GATC 2 cut(s) 157, 319
NlaIII CATG 3 cut(s) 158, 236, 406
NlaIV GGNNCC 3 cut(s) 230, 292, 385
NsiI ATGCAT 1 cut(s) 460
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 2 cut(s) 154, 402
PasI CCCWGGG 1 cut(s) 219
PceI AGGCCT 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 45, 51
PfoI TCCNGGA 1 cut(s) 40
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 172, 218
PspGI CCWGG 2 cut(s) 172, 218
PspN4I GGNNCC 3 cut(s) 230, 292, 385
RsaI GTAC 2 cut(s) 206, 487
RsaNI GTAC 2 cut(s) 205, 486
RseI CAYNNNNRTG 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 468, 499
Sau3AI GATC 2 cut(s) 157, 319
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 3 cut(s) 42, 174, 220
SduI GDGCHC 2 cut(s) 219, 376
SetI ASST 4 cut(s) 75, 90, 314, 447
SfaNI GCATC 3 cut(s) 14, 445, 467
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 3 cut(s) 77, 89, 440
SmoI CTYRAG 3 cut(s) 77, 89, 440
Sse9I AATT 4 cut(s) 303, 434, 464, 469
SseBI AGGCCT 1 cut(s) 250
SsiI CCGC 1 cut(s) 298
SspI AATATT 1 cut(s) 451
SspMI CTAG 1 cut(s) 492
StuI AGGCCT 1 cut(s) 250
StyD4I CCNGG 3 cut(s) 40, 172, 218
StyI CCWWGG 2 cut(s) 161, 232
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 3 cut(s) 78, 123, 132
TasI AATT 4 cut(s) 303, 434, 464, 469
TatI WGTACW 1 cut(s) 485
TfiI GAWTC 2 cut(s) 45, 51
Tru1I TTAA 2 cut(s) 468, 499
Tru9I TTAA 2 cut(s) 468, 499
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 419
TspRI CASTG 1 cut(s) 268
XhoI CTCGAG 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.