Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002340.1

Orthogroup ID

OG0010486

Physical Location & Seq

Genomic Coordinates Reverse (-)

99893 .. 101411

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002340.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggcatctgaaatgacaccacctgcagaactcgaacttccgggattccgattccatcccacagaggaagagcttctcgagttctacctcaagagcgtggtgttcggaaagcgattgcgcttcgatataatcgagtttctgaacatctaccgtcatgatccttgggacttgcctggattgtcaaagattggagaaagggagtggtactttttcgtgcccagggacaggaagcatgggagtggaggaaggcctaacagaaccactgaaactgggttttggaaagcgactggttccgaccgcaaaattgtgagcttatctgatccgaagaggattatcgggttgaggaagactctggttttctacaaagggagagcaccaagaggaaccaagactgattgggtcatgaatgagtatcgtttgcctgataactgcaaattgctcaaggacatagtactgtgcaagatatataggaaggcaacttccttgaaagtgctagagcaaagggcagcaatggaggaagagatgaagatgggctttcatgccaattcccctaacatttccgcgtcccctccaacgtcaatggacaccaccatgtcattttccagcttccaagaacaggaagcacaccagcatcatcatgatctaactgcgcaaattcccataattcccaccaaccttaagaaagaattagcagatgatgcagcactaactccagtagacgagcagcgaaaggaagaggatgagcaagcaatggagatgaaggaggctcccacatgtcttcatacttcttttggaaaagacaagctgccagagctcctggttcccaaaatgagcatggactggacccaagaccaattttgggcacccatgaatagtccttggcttctgccaaccccttatgccaacattctcaacatggaattactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

309

Amino Acids

35.74

Weight (kDa)

6.18

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17040
fragaria_vesca	FvH4_2g16180 FvH4_2g16180
malus_domestica	MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica	Prupe.8G174800_v2.0.a1
pyrus_communis	pycom05g12740 pycom10g11550
rosa_chinensis	RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata	RLG00000013115
rosa_multiflora	Rmu_sc0002340.1_g000019
rosa_roxburghii	Rroxscaffold_7G00188620
rosa_rugosa	Rorug06G0128400
rosa_samantha	Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana	Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	31
Acc16I	TGCGCA	1 cut(s)	651
Acc36I	ACCTGC	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	862
AccI	GTMKAC	1 cut(s)	717
AccII	CGCG	1 cut(s)	563
AciI	CCGC	2 cut(s)	298, 561
AclWI	GGATC	2 cut(s)	152, 314
AcsI	RAATTY	1 cut(s)	654
AfaI	GTAC	2 cut(s)	206, 453
AfiI	CCNNNNNNNGG	3 cut(s)	225, 616, 859
AflII	CTTAAG	1 cut(s)	677
AflIII	ACRYGT	1 cut(s)	773
AgsI	TTSAA	1 cut(s)	487
AjnI	CCWGG	3 cut(s)	172, 218, 816
AluBI	AGCT	5 cut(s)	73, 312, 606, 805, 814
AluI	AGCT	5 cut(s)	73, 312, 606, 805, 814
Alw21I	GWGCWC	2 cut(s)	376, 816
AlwI	GGATC	2 cut(s)	152, 314
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	4 cut(s)	506, 701, 724, 805
ApoI	RAATTY	1 cut(s)	654
Asp700I	GAANNNNTTC	1 cut(s)	72
AspLEI	GCGC	2 cut(s)	120, 652
AspS9I	GGNCC	1 cut(s)	843
AsuC2I	CCSGG	1 cut(s)	42
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	843
BaeGI	GKGCMC	2 cut(s)	219, 865
BanI	GGYRCC	1 cut(s)	862
BanII	GRGCYC	1 cut(s)	816
BbsI	GAAGAC	2 cut(s)	353, 770
Bbv12I	GWGCWC	2 cut(s)	376, 816
BbvI	GCAGC	4 cut(s)	518, 713, 736, 792
BccI	CCATC	2 cut(s)	63, 523
BciT130I	CCWGG	3 cut(s)	174, 220, 818
BcnI	CCSGG	1 cut(s)	42
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	1 cut(s)	24
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	4 cut(s)	507, 702, 725, 806
BlsI	GCNGC	4 cut(s)	508, 703, 726, 807
BmcAI	AGTACT	1 cut(s)	453
Bme1390I	CCNGG	4 cut(s)	42, 174, 220, 818
Bme18I	GGWCC	1 cut(s)	843
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	843
BmiI	GGNNCC	6 cut(s)	292, 385, 768, 822, 845, 864
BmrFI	CCNGG	4 cut(s)	42, 174, 220, 818
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	3 cut(s)	14, 640, 688
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	353, 770
BplI	GAGNNNNNCTC	2 cut(s)	334, 366
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	2 cut(s)	74, 425
BpuMI	CCSGG	1 cut(s)	42
BsaJI	CCNNGG	4 cut(s)	161, 218, 219, 878
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 616, 859
Bse1I	ACTGG	4 cut(s)	274, 292, 713, 845
Bse3DI	GCAATG	2 cut(s)	516, 756
BseBI	CCWGG	3 cut(s)	174, 220, 818
BseDI	CCNNGG	4 cut(s)	161, 218, 219, 878
BseGI	GGATG	2 cut(s)	55, 745
BseLI	CCNNNNNNNGG	3 cut(s)	225, 616, 859
BseMI	GCAATG	2 cut(s)	516, 756
BseNI	ACTGG	4 cut(s)	274, 292, 713, 845
BseSI	GKGCMC	2 cut(s)	219, 865
BseXI	GCAGC	4 cut(s)	518, 713, 736, 792
Bsh1236I	CGCG	1 cut(s)	563
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	862
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	2 cut(s)	376, 816
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	3 cut(s)	179, 236, 550
BslI	CCNNNNNNNGG	3 cut(s)	225, 616, 859
BsmFI	GGGAC	3 cut(s)	179, 236, 550
BsnI	GGCC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	4 cut(s)	219, 376, 816, 865
Bsp143I	GATC	3 cut(s)	157, 319, 640
BspACI	CCGC	2 cut(s)	298, 561
BspANI	GGCC	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	563
BspHI	TCATGA	3 cut(s)	154, 402, 637
BspLI	GGNNCC	6 cut(s)	292, 385, 768, 822, 845, 864
BspMAI	CTGCAG	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	152, 314
BspQI	GCTCTTC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	862
BspTI	CTTAAG	1 cut(s)	677
BsrDI	GCAATG	2 cut(s)	516, 756
BsrI	ACTGG	4 cut(s)	274, 292, 713, 845
BssECI	CCNNGG	4 cut(s)	161, 218, 219, 878
BssMI	GATC	3 cut(s)	157, 319, 640
BssT1I	CCWWGG	2 cut(s)	161, 878
Bst2UI	CCWGG	3 cut(s)	174, 220, 818
Bst4CI	ACNGT	2 cut(s)	152, 456
Bst6I	CTCTTC	4 cut(s)	63, 320, 513, 729
BstAFI	CTTAAG	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	747
BstF5I	GGATG	2 cut(s)	55, 745
BstFNI	CGCG	1 cut(s)	563
BstHHI	GCGC	2 cut(s)	120, 652
BstKTI	GATC	3 cut(s)	160, 322, 643
BstMBI	GATC	3 cut(s)	157, 319, 640
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	698, 811
BstNI	CCWGG	3 cut(s)	174, 220, 818
BstNSI	RCATGY	1 cut(s)	777
BstSCI	CCNGG	4 cut(s)	40, 172, 218, 816
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	2 cut(s)	219, 865
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	4 cut(s)	518, 713, 736, 792
BstV2I	GAAGAC	2 cut(s)	353, 770
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	55, 745
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	747
CciI	TCATGA	3 cut(s)	154, 402, 637
CfoI	GCGC	2 cut(s)	120, 652
Cfr13I	GGNCC	1 cut(s)	843
CseI	GACGC	1 cut(s)	552
Csp6I	GTAC	2 cut(s)	205, 452
CviJI	RGCY	9 cut(s)	73, 250, 312, 534, 606, 767, 805, 814, 883
CviKI_1	RGCY	9 cut(s)	73, 250, 312, 534, 606, 767, 805, 814, 883
CviQI	GTAC	2 cut(s)	205, 452
DpnI	GATC	3 cut(s)	159, 321, 642
DpnII	GATC	3 cut(s)	157, 319, 640
Eam1104I	CTCTTC	4 cut(s)	63, 320, 513, 729
EarI	CTCTTC	4 cut(s)	63, 320, 513, 729
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	2 cut(s)	161, 878
Eco147I	AGGCCT	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	816
Eco47I	GGWCC	1 cut(s)	843
Eco53kI	GAGCTC	1 cut(s)	814
Eco88I	CYCGRG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	814
EcoRII	CCWGG	3 cut(s)	172, 218, 816
EcoT14I	CCWWGG	2 cut(s)	161, 878
EcoT38I	GRGCYC	1 cut(s)	816
ErhI	CCWWGG	2 cut(s)	161, 878
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	3 cut(s)	179, 236, 550
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	4 cut(s)	507, 702, 725, 806
FokI	GGATG	2 cut(s)	42, 752
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	4 cut(s)	507, 702, 725, 806
FspBI	CTAG	1 cut(s)	494
FspI	TGCGCA	1 cut(s)	651
GlaI	GCGC	2 cut(s)	119, 651
GluI	GCNGC	4 cut(s)	507, 702, 725, 806
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	552
HhaI	GCGC	2 cut(s)	120, 652
Hin6I	GCGC	2 cut(s)	118, 650
HinP1I	GCGC	2 cut(s)	118, 650
HinfI	GANTC	3 cut(s)	45, 51, 349
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	7 cut(s)	10, 50, 107, 141, 295, 319, 324
Hpy188III	TCNNGA	5 cut(s)	77, 91, 155, 403, 638
Hpy8I	GTNNAC	1 cut(s)	718
HpyAV	CCTTC	3 cut(s)	240, 466, 754
HpyCH4III	ACNGT	2 cut(s)	152, 456
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	4 cut(s)	26, 432, 459, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	698, 811
HpySE526I	ACGT	1 cut(s)	575
HspAI	GCGC	2 cut(s)	118, 650
Kzo9I	GATC	3 cut(s)	157, 319, 640
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	2 cut(s)	772, 819
Lsp1109I	GCAGC	4 cut(s)	518, 713, 736, 792
LweI	GCATC	3 cut(s)	14, 640, 688
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	1 cut(s)	575
MalI	GATC	3 cut(s)	159, 321, 642
MboI	GATC	3 cut(s)	157, 319, 640
MboII	GAAGA	7 cut(s)	80, 337, 358, 530, 538, 746, 770
MhlI	GDGCHC	4 cut(s)	219, 376, 816, 865
MluCI	AATT	8 cut(s)	303, 434, 544, 654, 663, 686, 854, 920
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	2 cut(s)	318, 596
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	678
MslI	CAYNNNNRTG	3 cut(s)	237, 590, 636
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	4 cut(s)	42, 174, 220, 818
MvaI	CCWGG	3 cut(s)	174, 220, 818
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	2 cut(s)	698, 811
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	3 cut(s)	157, 319, 640
NlaIV	GGNNCC	6 cut(s)	292, 385, 768, 822, 845, 864
NsbI	TGCGCA	1 cut(s)	651
NspI	RCATGY	1 cut(s)	777
PaeR7I	CTCGAG	1 cut(s)	77
PagI	TCATGA	3 cut(s)	154, 402, 637
PaqCI	CACCTGC	1 cut(s)	31
PasI	CCCWGGG	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	250
PciI	ACATGT	1 cut(s)	773
PciSI	GCTCTTC	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	45, 51
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	508, 703, 726, 807
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PscI	ACATGT	1 cut(s)	773
Psp124BI	GAGCTC	1 cut(s)	816
Psp6I	CCWGG	3 cut(s)	172, 218, 816
PspGI	CCWGG	3 cut(s)	172, 218, 816
PspN4I	GGNNCC	6 cut(s)	292, 385, 768, 822, 845, 864
PspPI	GGNCC	1 cut(s)	843
PstI	CTGCAG	1 cut(s)	28
RsaI	GTAC	2 cut(s)	206, 453
RsaNI	GTAC	2 cut(s)	205, 452
RseI	CAYNNNNRTG	3 cut(s)	237, 590, 636
SacI	GAGCTC	1 cut(s)	816
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	4 cut(s)	507, 702, 725, 806
Sau3AI	GATC	3 cut(s)	157, 319, 640
Sau96I	GGNCC	1 cut(s)	843
ScaI	AGTACT	1 cut(s)	453
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	4 cut(s)	42, 174, 220, 818
SduI	GDGCHC	4 cut(s)	219, 376, 816, 865
SetI	ASST	9 cut(s)	25, 75, 90, 314, 578, 608, 678, 807, 816
SfaNI	GCATC	3 cut(s)	14, 640, 688
SfcI	CTRYAG	1 cut(s)	24
Sfr274I	CTCGAG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	843
SlaI	CTCGAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	3 cut(s)	237, 590, 636
SmlI	CTYRAG	4 cut(s)	77, 89, 440, 677
SmoI	CTYRAG	4 cut(s)	77, 89, 440, 677
Sse9I	AATT	8 cut(s)	303, 434, 544, 654, 663, 686, 854, 920
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	2 cut(s)	298, 561
SspMI	CTAG	1 cut(s)	494
SstI	GAGCTC	1 cut(s)	816
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	4 cut(s)	40, 172, 218, 816
StyI	CCWWGG	2 cut(s)	161, 878
TaaI	ACNGT	2 cut(s)	152, 456
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	4 cut(s)	33, 78, 123, 132
TasI	AATT	8 cut(s)	303, 434, 544, 654, 663, 686, 854, 920
TatI	WGTACW	1 cut(s)	451
TfiI	GAWTC	2 cut(s)	45, 51
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	4 cut(s)	506, 701, 724, 805
TspDTI	ATGAA	6 cut(s)	419, 527, 539, 770, 773, 884
TspRI	CASTG	1 cut(s)	268
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	843
XapI	RAATTY	1 cut(s)	654
XceI	RCATGY	1 cut(s)	777
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832
XhoI	CTCGAG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	1 cut(s)	494
ZrmI	AGTACT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.