Rh6DG234300
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010486
Physical Location & Seq
Forward (+)
41713406 .. 41715585
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG234300.1

Sequence Viewer

Length: 528 bp
ATGAATGAGTATCGTTTGCCTGATAACTGCAAATTGCTCAAGGACATAGTACTGTGCAAGATATATAGGAAGGCAACTTCCTTGAAAGTGCTAGAGCAAAGGGCAGCAATGGAGGAAGAGATGAAGATGGGCTTTCATGCCAATTCCCCTAACATTTCCGCGTCCCCTCCAACGTCAATGGACACCACCATGTCATTTTCCAGCTTCCAAGAACAGGAAGCACACCAGCATCATCATGATCTAACTGCGCAAATTCCCATAATTCCCACCAACCTTAAGAAAGAATTAGCAGATGATGCAGCACTAACTCCAGTAGAAGAGCAGCGAAAGGAAGAGGATGAGCAAGCAATGGAGATGAAGGAGGCTCCCACATGTCTTCATACTCCTTTTGGAAAAGACAAGCTGCCAGAGCTCCTGGTTCCCAAAATGAGCATGGACTGGACCCAAGACCAATTTTGGGCACCCATGAATAGTCCTTGGCTTCTGCCGACCCCTTATGCCAACATTCTCAACATGGAATTACTTTGA

Protein Analysis

175

Amino Acids

20.1

Weight (kDa)

5.02

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17040
fragaria_vesca FvH4_2g16180 FvH4_2g16180
malus_domestica MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica Prupe.8G174800_v2.0.a1
pyrus_communis pycom05g12740 pycom10g11550
rosa_chinensis RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata RLG00000013115
rosa_multiflora Rmu_sc0002340.1_g000019
rosa_roxburghii Rroxscaffold_7G00188620
rosa_rugosa Rorug06G0128400
rosa_samantha Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 460
AccII CGCG 1 cut(s) 161
AciI CCGC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 252
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 214, 457
AflII CTTAAG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 371
AgsI TTSAA 1 cut(s) 85
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 3 cut(s) 204, 403, 412
AluI AGCT 3 cut(s) 204, 403, 412
Alw21I GWGCWC 1 cut(s) 414
ApeKI GCWGC 4 cut(s) 104, 299, 322, 403
ApoI RAATTY 1 cut(s) 252
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 441
AvaII GGWCC 1 cut(s) 441
BaeGI GKGCMC 1 cut(s) 463
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 4 cut(s) 116, 311, 334, 390
BccI CCATC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 416
BfaI CTAG 1 cut(s) 92
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 4 cut(s) 105, 300, 323, 404
BlsI GCNGC 4 cut(s) 106, 301, 324, 405
BmcAI AGTACT 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 416
Bme18I GGWCC 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 4 cut(s) 366, 420, 443, 462
BmrFI CCNGG 1 cut(s) 416
BmsI GCATC 2 cut(s) 238, 286
BpiI GAAGAC 1 cut(s) 368
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 476
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 457
Bse1I ACTGG 2 cut(s) 311, 443
Bse3DI GCAATG 2 cut(s) 114, 354
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 1 cut(s) 476
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 2 cut(s) 214, 457
BseMI GCAATG 2 cut(s) 114, 354
BseNI ACTGG 2 cut(s) 311, 443
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 4 cut(s) 116, 311, 334, 390
Bsh1236I CGCG 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 460
BsiHKAI GWGCWC 1 cut(s) 414
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 214, 457
BsmFI GGGAC 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 414, 463
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 1 cut(s) 159
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 4 cut(s) 366, 420, 443, 462
BspQI GCTCTTC 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 460
BspTI CTTAAG 1 cut(s) 275
BsrDI GCAATG 2 cut(s) 114, 354
BsrI ACTGG 2 cut(s) 311, 443
BssECI CCNNGG 1 cut(s) 476
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 476
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 54
Bst6I CTCTTC 3 cut(s) 111, 312, 327
BstAFI CTTAAG 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 345
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 296, 409
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 463
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 4 cut(s) 116, 311, 334, 390
BstV2I GAAGAC 1 cut(s) 368
BtsCI GGATG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 235
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 441
CseI GACGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 50
CviAII CATG 7 cut(s) 137, 190, 236, 372, 433, 466, 514
CviJI RGCY 6 cut(s) 132, 204, 365, 403, 412, 481
CviKI_1 RGCY 6 cut(s) 132, 204, 365, 403, 412, 481
CviQI GTAC 1 cut(s) 50
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 3 cut(s) 111, 312, 327
EarI CTCTTC 3 cut(s) 111, 312, 327
Ecl136II GAGCTC 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 412
EcoICRI GAGCTC 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 476
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 476
FaeI CATG 7 cut(s) 140, 193, 239, 375, 436, 469, 517
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 1 cut(s) 148
FatI CATG 7 cut(s) 136, 189, 235, 371, 432, 465, 513
Fnu4HI GCNGC 4 cut(s) 105, 300, 323, 404
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 4 cut(s) 105, 300, 323, 404
FspBI CTAG 1 cut(s) 92
FspI TGCGCA 1 cut(s) 249
GlaI GCGC 1 cut(s) 249
GluI GCNGC 4 cut(s) 105, 300, 323, 404
GsuI CTGGAG 1 cut(s) 294
HgaI GACGC 1 cut(s) 150
HhaI GCGC 1 cut(s) 250
Hin1II CATG 7 cut(s) 140, 193, 239, 375, 436, 469, 517
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 236
HpyAV CCTTC 2 cut(s) 64, 352
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 30, 57, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 409
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 7 cut(s) 140, 193, 239, 375, 436, 469, 517
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 370, 417
LpnPI CCDG 9 cut(s) 33, 200, 214, 239, 324, 401, 420, 424, 428
Lsp1109I GCAGC 4 cut(s) 116, 311, 334, 390
LweI GCATC 2 cut(s) 238, 286
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 173
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 5 cut(s) 128, 136, 329, 344, 368
MhlI GDGCHC 2 cut(s) 414, 463
MluCI AATT 7 cut(s) 32, 142, 252, 261, 284, 452, 518
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 4 cut(s) 106, 177, 328, 355
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 2 cut(s) 188, 234
MspCI CTTAAG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 416
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 296, 409
NdeII GATC 1 cut(s) 238
NlaIII CATG 7 cut(s) 140, 193, 239, 375, 436, 469, 517
NlaIV GGNNCC 4 cut(s) 366, 420, 443, 462
NsbI TGCGCA 1 cut(s) 249
NspI RCATGY 1 cut(s) 375
PagI TCATGA 1 cut(s) 235
PciI ACATGT 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 312
PkrI GCNGC 4 cut(s) 106, 301, 324, 405
PscI ACATGT 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 4 cut(s) 366, 420, 443, 462
PspPI GGNCC 1 cut(s) 441
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 2 cut(s) 188, 234
SacI GAGCTC 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 4 cut(s) 105, 300, 323, 404
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 441
ScaI AGTACT 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 416
SduI GDGCHC 2 cut(s) 414, 463
SetI ASST 5 cut(s) 176, 206, 276, 405, 414
SfaNI GCATC 2 cut(s) 238, 286
SinI GGWCC 1 cut(s) 441
SmiMI CAYNNNNRTG 2 cut(s) 188, 234
SmlI CTYRAG 2 cut(s) 38, 275
SmoI CTYRAG 2 cut(s) 38, 275
Sse9I AATT 7 cut(s) 32, 142, 252, 261, 284, 452, 518
SsiI CCGC 1 cut(s) 159
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 1 cut(s) 176
TasI AATT 7 cut(s) 32, 142, 252, 261, 284, 452, 518
TatI WGTACW 1 cut(s) 49
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseI GCWGC 4 cut(s) 104, 299, 322, 403
TspDTI ATGAA 6 cut(s) 17, 125, 137, 368, 371, 482
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 1 cut(s) 252
XceI RCATGY 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XspI CTAG 1 cut(s) 92
ZrmI AGTACT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.