Rh6CG243100
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010486
Physical Location & Seq
Forward (+)
40932398 .. 40934604
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG243100.1

Sequence Viewer

Length: 492 bp
ATGCAGGACATAGTACTGTGCAAGATATATAGGAAGGCAACTTCCTTGAAAGTGCTAGAGCAAAGGGCAGCAATGGAGGAAGAGATGAAGATGGGCTTTCATGCCAATTCCCCTAACATTTCCGCGTCCCCTCCAACGTCAATGGACACCACCATGTCATTTTCCAGCTTCCAAGAACAGGAAGCACACCAGCATCATCATGATCTAACTGCGCAAATTCCCATAATTCCCACCAACCTTAAGAAAGAATTAGCAGATGATGCAGCACTAACTCCAGTAGAAGAGCAGCGAAAGGAAGAGGATGAGCAAGCAATGGAGATGAAGGAGGCTCCCACATGCCTTCATACTCCATTTGGAAAAGACAAGCTGCCAGAGCTCCTGGTTCCCAAAATGAGCATGGACTGGACCCAAGACCAATTTTGGGCACCCATGAATAGTCCTTGGCTTCTGCCGACCCCTTATGCCAACATTCTCAACATGGAATTACTTTGA

Protein Analysis

163

Amino Acids

18.64

Weight (kDa)

4.89

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17040
fragaria_vesca FvH4_2g16180 FvH4_2g16180
malus_domestica MD05G1130500.v1.1 MD10G1133400.v1.1
prunus_persica Prupe.8G174800_v2.0.a1
pyrus_communis pycom05g12740 pycom10g11550
rosa_chinensis RchiOBHm_Chr1g0324811 RchiOBHm_Chr6g0279801
rosa_laevigata RLG00000013115
rosa_multiflora Rmu_sc0002340.1_g000019
rosa_roxburghii Rroxscaffold_7G00188620
rosa_rugosa Rorug06G0128400
rosa_samantha Rh1CG065600 Rh6AG236500 Rh6BG240700 Rh6CG243100 Rh6DG234300
rosa_wichuraiana Rw1G005380 Rw6G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 424
AccII CGCG 1 cut(s) 125
AciI CCGC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 216
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 2 cut(s) 178, 421
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 3 cut(s) 168, 367, 376
AluI AGCT 3 cut(s) 168, 367, 376
Alw21I GWGCWC 1 cut(s) 378
ApeKI GCWGC 4 cut(s) 68, 263, 286, 367
ApoI RAATTY 1 cut(s) 216
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 405
AvaII GGWCC 1 cut(s) 405
BaeGI GKGCMC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 4 cut(s) 80, 275, 298, 354
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 380
BfaI CTAG 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 4 cut(s) 69, 264, 287, 368
BlsI GCNGC 4 cut(s) 70, 265, 288, 369
BmcAI AGTACT 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 4 cut(s) 330, 384, 407, 426
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 2 cut(s) 202, 250
BpmI CTGGAG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 440
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 421
Bse1I ACTGG 2 cut(s) 275, 407
Bse3DI GCAATG 2 cut(s) 78, 318
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 440
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 2 cut(s) 178, 421
BseMI GCAATG 2 cut(s) 78, 318
BseNI ACTGG 2 cut(s) 275, 407
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 4 cut(s) 80, 275, 298, 354
Bsh1236I CGCG 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 424
BsiHKAI GWGCWC 1 cut(s) 378
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 178, 421
BsmFI GGGAC 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 378, 427
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 123
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 4 cut(s) 330, 384, 407, 426
BspQI GCTCTTC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 424
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 2 cut(s) 78, 318
BsrI ACTGG 2 cut(s) 275, 407
BssECI CCNNGG 1 cut(s) 440
BssMI GATC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 3 cut(s) 75, 276, 291
BstAFI CTTAAG 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 309
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 260, 373
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 427
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 4 cut(s) 80, 275, 298, 354
BtsCI GGATG 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 309
CciI TCATGA 1 cut(s) 199
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 405
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 14
CviAII CATG 7 cut(s) 101, 154, 200, 336, 397, 430, 478
CviJI RGCY 6 cut(s) 96, 168, 329, 367, 376, 445
CviKI_1 RGCY 6 cut(s) 96, 168, 329, 367, 376, 445
CviQI GTAC 1 cut(s) 14
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 3 cut(s) 75, 276, 291
EarI CTCTTC 3 cut(s) 75, 276, 291
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 440
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 440
FaeI CATG 7 cut(s) 104, 157, 203, 339, 400, 433, 481
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 112
FatI CATG 7 cut(s) 100, 153, 199, 335, 396, 429, 477
Fnu4HI GCNGC 4 cut(s) 69, 264, 287, 368
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 4 cut(s) 69, 264, 287, 368
FspBI CTAG 1 cut(s) 56
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 1 cut(s) 213
GluI GCNGC 4 cut(s) 69, 264, 287, 368
GsuI CTGGAG 1 cut(s) 258
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 214
Hin1II CATG 7 cut(s) 104, 157, 203, 339, 400, 433, 481
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 28, 316, 350
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 3 cut(s) 4, 21, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 373
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 7 cut(s) 104, 157, 203, 339, 400, 433, 481
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 2 cut(s) 334, 381
LpnPI CCDG 8 cut(s) 164, 178, 203, 288, 365, 384, 388, 392
Lsp1109I GCAGC 4 cut(s) 80, 275, 298, 354
LweI GCATC 2 cut(s) 202, 250
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 137
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 4 cut(s) 92, 100, 293, 308
MhlI GDGCHC 2 cut(s) 378, 427
MluCI AATT 6 cut(s) 106, 216, 225, 248, 416, 482
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 4 cut(s) 70, 141, 292, 319
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 2 cut(s) 152, 198
MspCI CTTAAG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 260, 373
NdeII GATC 1 cut(s) 202
NlaIII CATG 7 cut(s) 104, 157, 203, 339, 400, 433, 481
NlaIV GGNNCC 4 cut(s) 330, 384, 407, 426
NsbI TGCGCA 1 cut(s) 213
NspI RCATGY 1 cut(s) 339
PagI TCATGA 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 276
PkrI GCNGC 4 cut(s) 70, 265, 288, 369
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 4 cut(s) 330, 384, 407, 426
PspPI GGNCC 1 cut(s) 405
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 152, 198
SacI GAGCTC 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 4 cut(s) 69, 264, 287, 368
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 1 cut(s) 405
ScaI AGTACT 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 2 cut(s) 378, 427
SetI ASST 5 cut(s) 140, 170, 240, 369, 378
SfaNI GCATC 2 cut(s) 202, 250
SinI GGWCC 1 cut(s) 405
SmiMI CAYNNNNRTG 2 cut(s) 152, 198
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 6 cut(s) 106, 216, 225, 248, 416, 482
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 56
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 1 cut(s) 440
TaaI ACNGT 1 cut(s) 18
TaiI ACGT 1 cut(s) 140
TasI AATT 6 cut(s) 106, 216, 225, 248, 416, 482
TatI WGTACW 1 cut(s) 13
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 4 cut(s) 68, 263, 286, 367
TspDTI ATGAA 5 cut(s) 89, 101, 332, 335, 446
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 405
XapI RAATTY 1 cut(s) 216
XceI RCATGY 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XspI CTAG 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.