AT2G17540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009943
Physical Location & Seq
Reverse (-)
7630361 .. 7631926
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17540.3

Sequence Viewer

Length: 828 bp
ATGGCGACAAATGCGTGCCTTGAGTCCGATTCGCTTCTACCTCCACGGAAGCGTTTACTCGCCGGATTCAAGAACCAGAACTCGAGAATCAGCAATGAATCTCCGAGTCCTCCTTTCGCTTCTTCGTCCTCGTCTACTACAACTTCAAATGGTTCCTCTGCTTCAGCAGTTGTGCACACTCATCATCTCGACCATCTACTCAATGACCAGACTCGGTCCCCGGAAGAGCTTGCTCAGGCGTCGAAAGCAACCGCTGCTTTAGCGGTTAAGGTTGCAAAGGCGGCGAGAGCTACTGCTAATGAGAAGGCCATCATTGCTTCTAAAGCAGTGGCTGCAGCCAAGAATGCGTTGGAATTGTTTGCTTCTTTTCCCGCAGCTGAGACGGTTTCTTGTAAAGAGCCTAGGTTGATTCGAGCTATAAACAATTCTCCTAGAGTCTTGACGGATTGTTCTGGTCACAGAAACAAGAAGCAAAAGACTCTGACTAGTACTATGAACGATGGGAATGATGTTGCTGGTGTTGTGGATTCAGATGACGGAACCAGAGTAAACGGGAAGCTGCTCTTATGCGATAACACGCTAAAGGAGAAAACAGAGGAAGAGAGTAGCTCATTAGGGAAAAGAAGAGGAAGAGTGAAGCTCCCTTTGAGCATGTGTGCCTACAAGGATCAAGAAAACGGTATCACATTAGAGGAAAACAATCTAAGTGTAAGTAAGTCGGAAGGTTATAATGGTGGTGTGGCTCAGGTTATAGAACGACCATCATGGAAGTGTCAGGACTTAAAGTCACCGGAATGTGTGAAGCAGAACAAAGTTGTACGTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

29.42

Weight (kDa)

9.13

Isoelectric Point (pI)

52.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca FvH4_1g10260
malus_domestica MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica Prupe.7G183600_v2.0.a1
pyrus_communis pycom02g08950 pycom15g20540
rosa_chinensis RchiOBHm_Chr2g0097081
rosa_laevigata RLG00000016701
rosa_multiflora Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii Rroxscaffold_2G00144990
rosa_rugosa Rorug02G0063500
rosa_samantha Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana Rw2G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 729
AccI GTMKAC 1 cut(s) 134
AciI CCGC 4 cut(s) 252, 263, 281, 372
AclWI GGATC 1 cut(s) 675
AcuI CTGAAG 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 2 cut(s) 490, 819
AgsI TTSAA 2 cut(s) 70, 147
AhdI GACNNNNNGTC 1 cut(s) 784
AhlI ACTAGT 1 cut(s) 485
AluBI AGCT 7 cut(s) 229, 290, 377, 416, 559, 609, 640
AluI AGCT 7 cut(s) 229, 290, 377, 416, 559, 609, 640
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 374
Alw44I GTGCAC 1 cut(s) 173
AlwI GGATC 1 cut(s) 675
AlwNI CAGNNNCTG 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 1 cut(s) 306
ApaLI GTGCAC 1 cut(s) 173
ApeKI GCWGC 5 cut(s) 254, 332, 335, 374, 559
AspA2I CCTAGG 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 780
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 1 cut(s) 216
AvrII CCTAGG 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 5 cut(s) 241, 319, 347, 386, 546
BccI CCATC 4 cut(s) 201, 317, 494, 769
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 374
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 3 cut(s) 402, 432, 486
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 6 cut(s) 255, 282, 333, 336, 375, 560
BlnI CCTAGG 1 cut(s) 401
BlsI GCNGC 6 cut(s) 256, 283, 334, 337, 376, 561
BmcAI AGTACT 1 cut(s) 490
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 216
BmeRI GACNNNNNGTC 1 cut(s) 784
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 3 cut(s) 154, 218, 541
BmrFI CCNGG 1 cut(s) 221
BplI GAGNNNNNCTC 4 cut(s) 593, 625, 624, 656
Bpu10I CCTNAGC 2 cut(s) 234, 744
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 44, 219, 401
BsaWI WCCGGW 1 cut(s) 790
Bse3DI GCAATG 2 cut(s) 100, 312
BseDI CCNNGG 3 cut(s) 44, 219, 401
BseMI GCAATG 2 cut(s) 100, 312
BseMII CTCAG 3 cut(s) 248, 369, 758
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 5 cut(s) 241, 319, 347, 386, 546
BshFI GGCC 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 3 cut(s) 63, 221, 791
BslFI GGGAC 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 374
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 667
BspACI CCGC 4 cut(s) 252, 263, 281, 372
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 3 cut(s) 247, 370, 757
BspLI GGNNCC 3 cut(s) 154, 218, 541
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 1 cut(s) 675
BspQI GCTCTTC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 100, 312
BssECI CCNNGG 3 cut(s) 44, 219, 401
BssMI GATC 1 cut(s) 667
BssNI GRCGYC 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 385, 680
Bst6I CTCTTC 4 cut(s) 219, 594, 619, 625
BstACI GRCGYC 1 cut(s) 239
BstAPI GCANNNNNTGC 2 cut(s) 254, 332
BstC8I GCNNGC 2 cut(s) 16, 231
BstDEI CTNAG 4 cut(s) 234, 378, 704, 744
BstDSI CCRYGG 1 cut(s) 44
BstKTI GATC 1 cut(s) 670
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 1 cut(s) 667
BstNSI RCATGY 1 cut(s) 655
BstSCI CCNGG 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 5 cut(s) 241, 319, 347, 386, 546
BsuRI GGCC 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 2 cut(s) 16, 231
CaiI CAGNNNCTG 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 216
CseI GACGC 1 cut(s) 228
Csp6I GTAC 2 cut(s) 489, 818
CviAII CATG 2 cut(s) 652, 765
CviQI GTAC 2 cut(s) 489, 818
DdeI CTNAG 4 cut(s) 234, 378, 704, 744
DpnI GATC 1 cut(s) 669
DpnII GATC 1 cut(s) 667
DriI GACNNNNNGTC 1 cut(s) 784
Eam1104I CTCTTC 4 cut(s) 219, 594, 619, 625
Eam1105I GACNNNNNGTC 1 cut(s) 784
EarI CTCTTC 4 cut(s) 219, 594, 619, 625
Eco130I CCWWGG 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 2 cut(s) 655, 768
FaiI YATR 8 cut(s) 419, 494, 568, 653, 729, 752, 766, 826
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 1 cut(s) 202
FatI CATG 2 cut(s) 651, 764
FauI CCCGC 1 cut(s) 379
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 6 cut(s) 255, 282, 333, 336, 375, 560
Fsp4HI GCNGC 6 cut(s) 255, 282, 333, 336, 375, 560
FspBI CTAG 3 cut(s) 402, 432, 486
GluI GCNGC 6 cut(s) 255, 282, 333, 336, 375, 560
HaeIII GGCC 1 cut(s) 308
HapII CCGG 3 cut(s) 63, 221, 791
HgaI GACGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 2 cut(s) 655, 768
HpaII CCGG 3 cut(s) 63, 221, 791
HphI GGTGA 1 cut(s) 780
Hpy166II GTNNAC 4 cut(s) 56, 135, 175, 550
Hpy188I TCNGA 5 cut(s) 28, 105, 483, 532, 721
Hpy188III TCNNGA 6 cut(s) 70, 84, 188, 439, 671, 776
Hpy8I GTNNAC 4 cut(s) 56, 135, 175, 550
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 298, 716
HpyCH4III ACNGT 2 cut(s) 385, 680
HpyCH4IV ACGT 1 cut(s) 820
HpyCH4V TGCA 3 cut(s) 175, 275, 335
HpyF3I CTNAG 4 cut(s) 234, 378, 704, 744
HpySE526I ACGT 1 cut(s) 820
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 2 cut(s) 655, 768
Kzo9I GATC 1 cut(s) 667
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 645
Lsp1109I GCAGC 5 cut(s) 241, 319, 347, 386, 546
MaeI CTAG 3 cut(s) 402, 432, 486
MaeII ACGT 1 cut(s) 820
MaeIII GTNAC 2 cut(s) 455, 786
MalI GATC 1 cut(s) 669
MboI GATC 1 cut(s) 667
MboII GAAGA 5 cut(s) 114, 236, 611, 636, 642
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 353, 424
MlyI GAGTC 5 cut(s) 32, 115, 205, 444, 472
MmeI TCCRAC 2 cut(s) 330, 699
MnlI CCTC 7 cut(s) 51, 120, 139, 166, 589, 620, 685
MseI TTAA 2 cut(s) 267, 782
MslI CAYNNNNRTG 2 cut(s) 769, 793
MspA1I CMGCKG 2 cut(s) 254, 377
MspI CCGG 3 cut(s) 63, 221, 791
MspR9I CCNGG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 349
NciI CCSGG 1 cut(s) 221
NdeII GATC 1 cut(s) 667
NlaIII CATG 2 cut(s) 655, 768
NlaIV GGNNCC 3 cut(s) 154, 218, 541
NmuCI GTSAC 2 cut(s) 455, 786
NspI RCATGY 1 cut(s) 655
PaeR7I CTCGAG 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 219
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 6 cut(s) 29, 66, 87, 98, 409, 527
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 6 cut(s) 256, 283, 334, 337, 376, 561
PleI GAGTC 5 cut(s) 31, 114, 205, 443, 472
PpsI GAGTC 5 cut(s) 31, 114, 205, 443, 472
PsiI TTATAA 1 cut(s) 729
PspN4I GGNNCC 3 cut(s) 154, 218, 541
PspPI GGNCC 1 cut(s) 216
PstI CTGCAG 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 332
PsyI GACNNNGTC 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 2 cut(s) 490, 819
RsaNI GTAC 2 cut(s) 489, 818
RseI CAYNNNNRTG 2 cut(s) 769, 793
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 267, 782
SatI GCNGC 6 cut(s) 255, 282, 333, 336, 375, 560
Sau3AI GATC 1 cut(s) 667
Sau96I GGNCC 1 cut(s) 216
ScaI AGTACT 1 cut(s) 490
SchI GAGTC 5 cut(s) 32, 115, 205, 444, 472
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 333
Sfr274I CTCGAG 1 cut(s) 82
SinI GGWCC 1 cut(s) 216
SlaI CTCGAG 1 cut(s) 82
SmiMI CAYNNNNRTG 2 cut(s) 769, 793
SmlI CTYRAG 2 cut(s) 20, 82
SmoI CTYRAG 2 cut(s) 20, 82
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 2 cut(s) 353, 424
SsiI CCGC 4 cut(s) 252, 263, 281, 372
SspMI CTAG 3 cut(s) 402, 432, 486
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 2 cut(s) 385, 680
TaiI ACGT 1 cut(s) 823
TaqI TCGA 4 cut(s) 83, 189, 242, 412
TaqII GACCGA 1 cut(s) 204
TasI AATT 2 cut(s) 353, 424
TatI WGTACW 1 cut(s) 488
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 6 cut(s) 29, 66, 87, 98, 409, 527
Tru1I TTAA 2 cut(s) 267, 782
Tru9I TTAA 2 cut(s) 267, 782
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 2 cut(s) 455, 786
TseI GCWGC 5 cut(s) 254, 332, 335, 374, 559
Tsp45I GTSAC 2 cut(s) 455, 786
TspDTI ATGAA 3 cut(s) 111, 509, 813
TspGWI ACGGA 3 cut(s) 61, 458, 552
TspRI CASTG 1 cut(s) 333
Tth111I GACNNNGTC 1 cut(s) 214
VneI GTGCAC 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 216
XceI RCATGY 1 cut(s) 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 82
XmaJI CCTAGG 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 134
XspI CTAG 3 cut(s) 402, 432, 486
ZrmI AGTACT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.