RchiOBHm_Chr2g0097081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0009943
Physical Location & Seq
Reverse (-)
9790873 .. 9793278
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47196

Sequence Viewer

Length: 1137 bp
ATGGAGGGTAACTTATGTGATGTCAACCATTTGGATGCTGATGTCCTTTTACCCCCGAGAAAGCGTCTGCTTGCTGGGTTGAAGAAACAGAGTCCGGAGGGTGATAGTAGTTCATGGCTGTCTCTAGTGTCAGCAACAGCTTCGGCTTCGGCTTCTGCTTCTTCTTCTTCATCGCCTTCTTCAAGTGAACTCAACACACGTTTAAACAGAATATTGACTTCTCATGATCCTAATCTTTCACCCGAGGAGTTGGTAGAGGTCTCAAAATCGGCTGCTACTGCTGCAGTTAAGGCTGCAGAAGATGCGAGAGCTGCAGCTGAAGAGAAAGCTGCAATAGCTGCAAAGGCAGTGGCTGCAGCCAAGAGTGCTTTAGATTTGGTTGCCTCTTTCTCGGACGAAATAGCCAGCAAGGAGAAACACCTGAAAAAGAACAAGCTCAAGAAACATGTCCCAGTTCAGCTCTTGTACAAAAAATATCAGCCAATTGAGAATTGTAAGAAAGATGAAGAGTTGGCCCGGAAGTTGCATAGAGCTATTAATAGCTCACCACGAATCTCAAAGAATCCATCAGGTTCTGACTCTAAGGGTCACAAACACAAGAAGCCTAAAATCTCACAGAGTTCTGAGGTAGCTAGGGTTTCCAATGGAAGTACAGTATTGGATCAAGACCCTGCATCTGCTTGCAATGGTCATGCTGTGGCAGGTAAGCTCGATTTTGAAGACACCATCCTTGACTTGTACAAAAATAAAGCAGCTGAAAAAGCTTATAGAAATGATAAATCTGGTCGATCGGAGATGGATAATGGGGAAGCAGAATCAAGTCAAACAAAAGAGAAAAATTGGGACGATATGCCTACTACTCCTAGTGGTAAAAAAAGGGGCCGAGTGAAGCTAAAAAAGTTGCCCTTAAGTGTTTGCACTTTTAGGGATCAGGCAAATCCAAAAGAAGATGTGGGTGCAAGAAGCTCCCCACTAACTGATATGAACATGGGAAATCCGACTGCTGGAAACAAGCCCTTGTTTCCTGCAGAGTCTTCTGCTGATAGTATGCTGCCTATTGAGCCCACACCGGTGTGGAAATGCCAGGAGTTCAAGGCACCTGCATGTGTGAAGCAAAATAAAGTCATGCAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

40.68

Weight (kDa)

9.18

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca FvH4_1g10260
malus_domestica MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica Prupe.7G183600_v2.0.a1
pyrus_communis pycom02g08950 pycom15g20540
rosa_chinensis RchiOBHm_Chr2g0097081
rosa_laevigata RLG00000016701
rosa_multiflora Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii Rroxscaffold_2G00144990
rosa_rugosa Rorug02G0063500
rosa_samantha Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana Rw2G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1108
Acc36I ACCTGC 2 cut(s) 692, 1108
AccB1I GGYRCC 1 cut(s) 1096
AccIII TCCGGA 1 cut(s) 94
AclWI GGATC 3 cut(s) 221, 669, 936
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 3 cut(s) 467, 652, 740
AfiI CCNNNNNNNGG 1 cut(s) 1004
AflII CTTAAG 1 cut(s) 907
AflIII ACRYGT 2 cut(s) 197, 445
AgeI ACCGGT 1 cut(s) 1069
AgsI TTSAA 4 cut(s) 82, 183, 719, 1093
AjnI CCWGG 1 cut(s) 1083
AleI CACNNNNGTG 2 cut(s) 1070, 1072
Alw26I GTCTC 2 cut(s) 126, 265
AlwI GGATC 3 cut(s) 221, 669, 936
AlwNI CAGNNNCTG 2 cut(s) 353, 575
Ama87I CYCGRG 2 cut(s) 55, 242
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 2 cut(s) 513, 880
AseI ATTAAT 1 cut(s) 537
AsiGI ACCGGT 1 cut(s) 1069
AspS9I GGNCC 2 cut(s) 514, 880
AsuC2I CCSGG 1 cut(s) 517
AsuHPI GGTGA 3 cut(s) 113, 231, 537
AvaI CYCGRG 2 cut(s) 55, 242
BanI GGYRCC 1 cut(s) 1096
BanII GRGCYC 1 cut(s) 1065
BbsI GAAGAC 2 cut(s) 726, 1026
BccI CCATC 3 cut(s) 574, 734, 790
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 1 cut(s) 1085
BcnI CCSGG 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 126, 265
BfaI CTAG 3 cut(s) 125, 633, 864
BfmI CTRYAG 5 cut(s) 282, 294, 312, 354, 1026
BfrI CTTAAG 1 cut(s) 907
BfuAI ACCTGC 2 cut(s) 692, 1108
Bme1390I CCNGG 2 cut(s) 517, 1085
BmeT110I CYCGRG 2 cut(s) 55, 242
BmgT120I GGNCC 2 cut(s) 514, 880
BmiI GGNNCC 2 cut(s) 881, 1098
BmrFI CCNGG 2 cut(s) 517, 1085
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 3 cut(s) 25, 292, 683
BmuI ACTGGG 1 cut(s) 446
BpiI GAAGAC 2 cut(s) 726, 1026
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 2 cut(s) 94, 1069
Bsc4I CCNNNNNNNGG 1 cut(s) 1004
Bse118I RCCGGY 1 cut(s) 1069
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 231
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 1 cut(s) 1085
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 40, 726
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 1004
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 791
BshFI GGCC 2 cut(s) 515, 882
BshNI GGYRCC 1 cut(s) 1096
BshTI ACCGGT 1 cut(s) 1069
BsiEI CGRYCG 1 cut(s) 791
BsiHKCI CYCGRG 2 cut(s) 55, 242
BsiSI CCGG 3 cut(s) 95, 517, 1070
BslFI GGGAC 2 cut(s) 434, 857
BslI CCNNNNNNNGG 1 cut(s) 1004
BsmAI GTCTC 2 cut(s) 126, 265
BsmFI GGGAC 2 cut(s) 434, 857
BsnI GGCC 2 cut(s) 515, 882
Bso31I GGTCTC 1 cut(s) 265
BsoBI CYCGRG 2 cut(s) 55, 242
Bsp1286I GDGCHC 1 cut(s) 1065
Bsp13I TCCGGA 1 cut(s) 94
Bsp1407I TGTACA 2 cut(s) 465, 738
Bsp143I GATC 4 cut(s) 226, 661, 788, 928
BspANI GGCC 2 cut(s) 515, 882
BspCNI CTCAG 1 cut(s) 616
BspEI TCCGGA 1 cut(s) 94
BspHI TCATGA 2 cut(s) 223, 1133
BspLI GGNNCC 2 cut(s) 881, 1098
BspMAI CTGCAG 5 cut(s) 286, 298, 316, 358, 1030
BspMI ACCTGC 2 cut(s) 692, 1108
BspPI GGATC 3 cut(s) 221, 669, 936
BspT107I GGYRCC 1 cut(s) 1096
BspTI CTTAAG 1 cut(s) 907
BspTNI GGTCTC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 691
BsrFI RCCGGY 1 cut(s) 1069
BsrGI TGTACA 2 cut(s) 465, 738
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 1069
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 4 cut(s) 226, 661, 788, 928
Bst2UI CCWGG 1 cut(s) 1085
Bst4CI ACNGT 1 cut(s) 655
Bst6I CTCTTC 2 cut(s) 315, 501
BstAFI CTTAAG 1 cut(s) 907
BstAPI GCANNNNNTGC 3 cut(s) 302, 338, 353
BstAUI TGTACA 2 cut(s) 465, 738
BstC8I GCNNGC 3 cut(s) 72, 406, 682
BstDEI CTNAG 2 cut(s) 582, 624
BstF5I GGATG 2 cut(s) 40, 726
BstKTI GATC 4 cut(s) 229, 664, 791, 931
BstMAI GTCTC 2 cut(s) 126, 265
BstMBI GATC 4 cut(s) 226, 661, 788, 928
BstMCI CGRYCG 1 cut(s) 791
BstNI CCWGG 1 cut(s) 1085
BstNSI RCATGY 2 cut(s) 449, 1107
BstSCI CCNGG 2 cut(s) 515, 1083
BstSFI CTRYAG 5 cut(s) 282, 294, 312, 354, 1026
BstV2I GAAGAC 2 cut(s) 726, 1026
BsuRI GGCC 2 cut(s) 515, 882
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 2 cut(s) 40, 726
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 2 cut(s) 692, 1108
Cac8I GCNNGC 3 cut(s) 72, 406, 682
CaiI CAGNNNCTG 2 cut(s) 353, 575
CciI TCATGA 2 cut(s) 223, 1133
Cfr10I RCCGGY 1 cut(s) 1069
Cfr13I GGNCC 2 cut(s) 514, 880
CseI GACGC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 466, 651, 739
CspAI ACCGGT 1 cut(s) 1069
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 8 cut(s) 114, 224, 446, 692, 988, 1104, 1126, 1134
CviQI GTAC 3 cut(s) 466, 651, 739
DdeI CTNAG 2 cut(s) 582, 624
DpnI GATC 4 cut(s) 228, 663, 790, 930
DpnII GATC 4 cut(s) 226, 661, 788, 928
DraI TTTAAA 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 315, 501
EarI CTCTTC 2 cut(s) 315, 501
Eco24I GRGCYC 1 cut(s) 1065
Eco31I GGTCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 55, 242
EcoRII CCWGG 1 cut(s) 1083
EcoT38I GRGCYC 1 cut(s) 1065
FaeI CATG 8 cut(s) 117, 227, 449, 695, 991, 1107, 1129, 1137
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 2 cut(s) 434, 857
FatI CATG 8 cut(s) 113, 223, 445, 691, 987, 1103, 1125, 1133
FokI GGATG 2 cut(s) 47, 713
FriOI GRGCYC 1 cut(s) 1065
FspBI CTAG 3 cut(s) 125, 633, 864
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 515, 882
HapII CCGG 3 cut(s) 95, 517, 1070
HgaI GACGC 1 cut(s) 53
Hin1II CATG 8 cut(s) 117, 227, 449, 695, 991, 1107, 1129, 1137
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 762
HinfI GANTC 6 cut(s) 91, 552, 562, 578, 815, 1031
HpaII CCGG 3 cut(s) 95, 517, 1070
HphI GGTGA 3 cut(s) 113, 231, 537
Hpy166II GTNNAC 2 cut(s) 25, 188
Hpy188I TCNGA 5 cut(s) 394, 577, 625, 793, 999
Hpy188III TCNNGA 5 cut(s) 95, 224, 439, 665, 1134
Hpy8I GTNNAC 2 cut(s) 25, 188
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 1 cut(s) 199
HpyF3I CTNAG 2 cut(s) 582, 624
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 8 cut(s) 117, 227, 449, 695, 991, 1107, 1129, 1137
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 226, 661, 788, 928
LmnI GCTCC 1 cut(s) 971
LweI GCATC 3 cut(s) 25, 292, 683
MaeI CTAG 3 cut(s) 125, 633, 864
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 8, 587
MalI GATC 4 cut(s) 228, 663, 790, 930
MboI GATC 4 cut(s) 226, 661, 788, 928
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 1065
MluCI AATT 3 cut(s) 483, 490, 838
MlyI GAGTC 3 cut(s) 100, 572, 1040
MmeI TCCRAC 1 cut(s) 1022
MnlI CCTC 5 cut(s) 91, 238, 250, 394, 619
MroI TCCGGA 1 cut(s) 94
MseI TTAA 4 cut(s) 203, 288, 537, 908
MslI CAYNNNNRTG 4 cut(s) 33, 1070, 1072, 1102
MspA1I CMGCKG 2 cut(s) 317, 755
MspCI CTTAAG 1 cut(s) 907
MspI CCGG 3 cut(s) 95, 517, 1070
MspR9I CCNGG 2 cut(s) 517, 1085
MssI GTTTAAAC 1 cut(s) 204
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 1085
NciI CCSGG 1 cut(s) 517
NdeII GATC 4 cut(s) 226, 661, 788, 928
NlaIII CATG 8 cut(s) 117, 227, 449, 695, 991, 1107, 1129, 1137
NlaIV GGNNCC 2 cut(s) 881, 1098
NmeAIII GCCGAG 1 cut(s) 908
NmuCI GTSAC 1 cut(s) 587
NspI RCATGY 2 cut(s) 449, 1107
OliI CACNNNNGTG 2 cut(s) 1070, 1072
PagI TCATGA 2 cut(s) 223, 1133
PaqCI CACCTGC 1 cut(s) 1108
PciI ACATGT 1 cut(s) 445
PfeI GAWTC 3 cut(s) 552, 562, 815
PinAI ACCGGT 1 cut(s) 1069
Ple19I CGATCG 1 cut(s) 791
PleI GAGTC 3 cut(s) 99, 572, 1039
PmeI GTTTAAAC 1 cut(s) 204
PpsI GAGTC 3 cut(s) 99, 572, 1039
PscI ACATGT 1 cut(s) 445
PshBI ATTAAT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 1083
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 1083
PspN4I GGNNCC 2 cut(s) 881, 1098
PspPI GGNCC 2 cut(s) 514, 880
PstI CTGCAG 5 cut(s) 286, 298, 316, 358, 1030
PstNI CAGNNNCTG 2 cut(s) 353, 575
PvuI CGATCG 1 cut(s) 791
PvuII CAGCTG 2 cut(s) 317, 755
RsaI GTAC 3 cut(s) 467, 652, 740
RsaNI GTAC 3 cut(s) 466, 651, 739
RseI CAYNNNNRTG 4 cut(s) 33, 1070, 1072, 1102
SaqAI TTAA 4 cut(s) 203, 288, 537, 908
Sau3AI GATC 4 cut(s) 226, 661, 788, 928
Sau96I GGNCC 2 cut(s) 514, 880
SchI GAGTC 3 cut(s) 100, 572, 1040
ScrFI CCNGG 2 cut(s) 517, 1085
SduI GDGCHC 1 cut(s) 1065
SfaNI GCATC 3 cut(s) 25, 292, 683
SfcI CTRYAG 5 cut(s) 282, 294, 312, 354, 1026
SgrAI CRCCGGYG 1 cut(s) 1069
SmiMI CAYNNNNRTG 4 cut(s) 33, 1070, 1072, 1102
SmlI CTYRAG 2 cut(s) 437, 907
SmoI CTYRAG 2 cut(s) 437, 907
Sse9I AATT 3 cut(s) 483, 490, 838
SspI AATATT 1 cut(s) 213
SspMI CTAG 3 cut(s) 125, 633, 864
StyD4I CCNGG 2 cut(s) 515, 1083
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 711, 787
TasI AATT 3 cut(s) 483, 490, 838
TatI WGTACW 3 cut(s) 465, 650, 738
TfiI GAWTC 3 cut(s) 552, 562, 815
Tru1I TTAA 4 cut(s) 203, 288, 537, 908
Tru9I TTAA 4 cut(s) 203, 288, 537, 908
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 587
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 4 cut(s) 102, 159, 519, 998
TspRI CASTG 1 cut(s) 354
Vha464I CTTAAG 1 cut(s) 907
VspI ATTAAT 1 cut(s) 537
XceI RCATGY 2 cut(s) 449, 1107
XspI CTAG 3 cut(s) 125, 633, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.