FvH4_1g10260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009943
Physical Location & Seq
Reverse (-)
5587428 .. 5589927
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10260.t1

Sequence Viewer

Length: 1131 bp
ATGGAGGGTAACTTATGTGATGTCAACCATTTGGATGCTGATGTCCTTTTACCTCCGCGAAAGCGTCTGCTTGCTGGATTGAAGAAACAGAGCCCGGAGGGTGATAGTAGTTCATGGCTGTCTCTAGTGTCAGCAACAGCTTCTGCTTCTGCTTCCGCGTCTTCTTCTTCATCGCCTTCTTCAAGTGAACTCAACACACGTCTTAACAGAATATTGACTTCTCATGATCCTAATCTTTCACCTGAGGAGTTAGTAGAGGTCTCAAAATCAGCTGCCGCTGCTGCAGTTAAGGCTGCTGAAAATGCAAGAGCTGCAGCTGAAGATAAAGCTGCAATAGCTGCAAAGGCAGTGGCTGCCGCCAAGAGTGCTTTAGATTTGGTTGCCTCTTTTTCAGATGAAATAGCCAGCAAGGAGAAACACCTGAAAAAGAACAAGCTTAAGAAGCATGTACCAGTTCAGCTCTTGTACAAAAAATATCAGCCAATTGAGAATTGTAAGAAAGATGAAGAGTTGGCCCGGAAGTTGCATAGAGCTATTAATAGCTCACCACGAATCTCAAGGAACCCATCAAGTTCTGACTCCAAGGGTCACAAACACAAGAAGCCTAAAATCTCACAGAGTTCTGAAGTAGCTAGGATTTCCAACGGGAGTACTGTATTGGATCAAGACCCTGCACCTGCTTGCAATGGTCATGCTGTGGCAGGTAAGCTCGATTTTGAAGACACCATCCTTGACATGTACAAAAATAAAGCAGCTGAAAAAGCATACAGAAACGATAAATCTGGTCGATCAGAGATGGATAATGGGGAAGCAGAATCAAGTCAGACGAAGGAGAAAAATTGGGACGATATGCCTGCTAGTGGTAAAAAGAGGGGTCGAGTGAAGCTAAAGAAGTTGCCTTTAAGTGTTTGCACTTTTAGGGATAAGGCGAATCCCAAAGAAGACGTGGGTGCAAGAAGCTCCCCACTAACTGATATGAACATGGGAAATCCTACTACTGGAAACAAGCCTTTGTTTCCTGTGGAGTCTTCTGCTGATAGTATGCTGCCTATTGAGCCCACGCCTGTGTGGAAATGCCAGGAGTTCAAGGCACCTGCATGTGTGAAGCAAAATAAAGTCATGCAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

377

Amino Acids

40.56

Weight (kDa)

9.3

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca FvH4_1g10260
malus_domestica MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica Prupe.7G183600_v2.0.a1
pyrus_communis pycom02g08950 pycom15g20540
rosa_chinensis RchiOBHm_Chr2g0097081
rosa_laevigata RLG00000016701
rosa_multiflora Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii Rroxscaffold_2G00144990
rosa_rugosa Rorug02G0063500
rosa_samantha Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana Rw2G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 685, 1102
Acc36I ACCTGC 3 cut(s) 685, 692, 1102
AccB1I GGYRCC 1 cut(s) 1090
AccII CGCG 2 cut(s) 58, 158
AciI CCGC 4 cut(s) 56, 156, 276, 357
AclWI GGATC 2 cut(s) 221, 669
AcuI CTGAAG 2 cut(s) 339, 645
AfaI GTAC 4 cut(s) 450, 467, 652, 740
AfiI CCNNNNNNNGG 2 cut(s) 860, 998
AflII CTTAAG 1 cut(s) 437
AflIII ACRYGT 2 cut(s) 197, 735
AgsI TTSAA 4 cut(s) 82, 183, 719, 1087
AjiI CACGTC 2 cut(s) 200, 946
AjnI CCWGG 1 cut(s) 1077
AleI CACNNNNGTG 1 cut(s) 1064
Alw26I GTCTC 2 cut(s) 126, 265
AlwI GGATC 2 cut(s) 221, 669
AlwNI CAGNNNCTG 2 cut(s) 143, 353
AoxI GGCC 1 cut(s) 513
AseI ATTAAT 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 514
AsuC2I CCSGG 2 cut(s) 95, 517
AsuHPI GGTGA 3 cut(s) 113, 231, 537
AxyI CCTNAGG 1 cut(s) 243
BanI GGYRCC 1 cut(s) 1090
BanII GRGCYC 2 cut(s) 95, 1059
BbsI GAAGAC 4 cut(s) 153, 726, 948, 1020
BccI CCATC 3 cut(s) 574, 734, 790
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 1 cut(s) 1079
BcnI CCSGG 2 cut(s) 95, 517
BcoDI GTCTC 2 cut(s) 126, 265
BfaI CTAG 3 cut(s) 125, 633, 858
BfmI CTRYAG 2 cut(s) 282, 312
BfrI CTTAAG 1 cut(s) 437
BfuAI ACCTGC 3 cut(s) 685, 692, 1102
BmcAI AGTACT 1 cut(s) 652
Bme1390I CCNGG 3 cut(s) 95, 517, 1079
BmgBI CACGTC 2 cut(s) 200, 946
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 2 cut(s) 563, 1092
BmrFI CCNGG 3 cut(s) 95, 517, 1079
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 4 cut(s) 153, 726, 948, 1020
BpuEI CTTGAG 1 cut(s) 541
BpuMI CCSGG 2 cut(s) 95, 517
BsaBI GATNNNNATC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 582
Bsc4I CCNNNNNNNGG 2 cut(s) 860, 998
Bse1I ACTGG 2 cut(s) 452, 1003
Bse21I CCTNAGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 1 cut(s) 1079
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 2 cut(s) 40, 726
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 860, 998
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 452, 1003
BseRI GAGGAG 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 657
Bsh1236I CGCG 2 cut(s) 58, 158
BshFI GGCC 1 cut(s) 515
BshNI GGYRCC 1 cut(s) 1090
BsiSI CCGG 2 cut(s) 95, 517
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 2 cut(s) 860, 998
BsmAI GTCTC 2 cut(s) 126, 265
BsmFI GGGAC 1 cut(s) 857
BsnI GGCC 1 cut(s) 515
Bso31I GGTCTC 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 95, 1059
Bsp1407I TGTACA 2 cut(s) 465, 738
Bsp143I GATC 3 cut(s) 226, 661, 788
BspACI CCGC 4 cut(s) 56, 156, 276, 357
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 1 cut(s) 235
BspFNI CGCG 2 cut(s) 58, 158
BspHI TCATGA 2 cut(s) 223, 1127
BspLI GGNNCC 2 cut(s) 563, 1092
BspMAI CTGCAG 2 cut(s) 286, 316
BspMI ACCTGC 3 cut(s) 685, 692, 1102
BspPI GGATC 2 cut(s) 221, 669
BspT107I GGYRCC 1 cut(s) 1090
BspTI CTTAAG 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 691
BsrGI TGTACA 2 cut(s) 465, 738
BsrI ACTGG 2 cut(s) 452, 1003
BssECI CCNNGG 1 cut(s) 582
BssMI GATC 3 cut(s) 226, 661, 788
BssT1I CCWWGG 1 cut(s) 582
Bst2UI CCWGG 1 cut(s) 1079
Bst4CI ACNGT 1 cut(s) 655
Bst6I CTCTTC 1 cut(s) 501
BstAFI CTTAAG 1 cut(s) 437
BstAPI GCANNNNNTGC 3 cut(s) 311, 338, 353
BstAUI TGTACA 2 cut(s) 465, 738
BstC8I GCNNGC 4 cut(s) 72, 406, 682, 855
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 40, 726
BstFNI CGCG 2 cut(s) 58, 158
BstKTI GATC 3 cut(s) 229, 664, 791
BstMAI GTCTC 2 cut(s) 126, 265
BstMBI GATC 3 cut(s) 226, 661, 788
BstNI CCWGG 1 cut(s) 1079
BstNSI RCATGY 3 cut(s) 449, 739, 1101
BstSCI CCNGG 3 cut(s) 93, 515, 1077
BstSFI CTRYAG 2 cut(s) 282, 312
BstUI CGCG 2 cut(s) 58, 158
BstV2I GAAGAC 4 cut(s) 153, 726, 948, 1020
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 1 cut(s) 515
BtgZI GCGATG 1 cut(s) 156
BtrI CACGTC 2 cut(s) 200, 946
BtsCI GGATG 2 cut(s) 40, 726
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 3 cut(s) 685, 692, 1102
Cac8I GCNNGC 4 cut(s) 72, 406, 682, 855
CaiI CAGNNNCTG 2 cut(s) 143, 353
CciI TCATGA 2 cut(s) 223, 1127
Cfr13I GGNCC 1 cut(s) 514
CseI GACGC 2 cut(s) 53, 147
Csp6I GTAC 4 cut(s) 449, 466, 651, 739
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 9 cut(s) 114, 224, 446, 692, 736, 982, 1098, 1120, 1128
CviQI GTAC 4 cut(s) 449, 466, 651, 739
DdeI CTNAG 1 cut(s) 243
DpnI GATC 3 cut(s) 228, 663, 790
DpnII GATC 3 cut(s) 226, 661, 788
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 582
Eco24I GRGCYC 2 cut(s) 95, 1059
Eco31I GGTCTC 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 339, 645
Eco81I CCTNAGG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 1077
EcoT14I CCWWGG 1 cut(s) 582
EcoT38I GRGCYC 2 cut(s) 95, 1059
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
FaqI GGGAC 1 cut(s) 857
FatI CATG 9 cut(s) 113, 223, 445, 691, 735, 981, 1097, 1119, 1127
FokI GGATG 2 cut(s) 47, 713
FriOI GRGCYC 2 cut(s) 95, 1059
FspBI CTAG 3 cut(s) 125, 633, 858
HaeIII GGCC 1 cut(s) 515
HapII CCGG 2 cut(s) 95, 517
HgaI GACGC 2 cut(s) 53, 147
Hin1II CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 5 cut(s) 552, 578, 815, 931, 1025
HpaII CCGG 2 cut(s) 95, 517
HphI GGTGA 3 cut(s) 113, 231, 537
Hpy166II GTNNAC 2 cut(s) 25, 188
Hpy188I TCNGA 5 cut(s) 394, 577, 625, 793, 825
Hpy188III TCNNGA 3 cut(s) 224, 665, 1128
Hpy8I GTNNAC 2 cut(s) 25, 188
HpyAV CCTTC 2 cut(s) 186, 823
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 2 cut(s) 199, 945
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 2 cut(s) 199, 945
Hsp92II CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
Kzo9I GATC 3 cut(s) 226, 661, 788
LmnI GCTCC 1 cut(s) 965
LweI GCATC 1 cut(s) 25
MaeI CTAG 3 cut(s) 125, 633, 858
MaeII ACGT 2 cut(s) 199, 945
MaeIII GTNAC 2 cut(s) 8, 587
MalI GATC 3 cut(s) 228, 663, 790
MboI GATC 3 cut(s) 226, 661, 788
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 95, 1059
MluCI AATT 3 cut(s) 483, 490, 838
MlyI GAGTC 2 cut(s) 572, 1034
MmeI TCCRAC 1 cut(s) 666
MnlI CCTC 6 cut(s) 63, 91, 238, 250, 394, 864
MseI TTAA 5 cut(s) 204, 288, 438, 537, 902
MslI CAYNNNNRTG 3 cut(s) 33, 1064, 1096
MspA1I CMGCKG 4 cut(s) 272, 278, 317, 755
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 2 cut(s) 95, 517
MspR9I CCNGG 3 cut(s) 95, 517, 1079
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 1079
MvnI CGCG 2 cut(s) 58, 158
NciI CCSGG 2 cut(s) 95, 517
NdeII GATC 3 cut(s) 226, 661, 788
NlaIII CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
NlaIV GGNNCC 2 cut(s) 563, 1092
NmuCI GTSAC 1 cut(s) 587
NspI RCATGY 3 cut(s) 449, 739, 1101
OliI CACNNNNGTG 1 cut(s) 1064
PagI TCATGA 2 cut(s) 223, 1127
PaqCI CACCTGC 2 cut(s) 685, 1102
PciI ACATGT 1 cut(s) 735
PfeI GAWTC 3 cut(s) 552, 815, 931
PleI GAGTC 2 cut(s) 572, 1033
PpsI GAGTC 2 cut(s) 572, 1033
PscI ACATGT 1 cut(s) 735
PshBI ATTAAT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 1077
PspGI CCWGG 1 cut(s) 1077
PspN4I GGNNCC 2 cut(s) 563, 1092
PspPI GGNCC 1 cut(s) 514
PstI CTGCAG 2 cut(s) 286, 316
PstNI CAGNNNCTG 2 cut(s) 143, 353
PvuII CAGCTG 3 cut(s) 272, 317, 755
RsaI GTAC 4 cut(s) 450, 467, 652, 740
RsaNI GTAC 4 cut(s) 449, 466, 651, 739
RseI CAYNNNNRTG 3 cut(s) 33, 1064, 1096
SaqAI TTAA 5 cut(s) 204, 288, 438, 537, 902
Sau3AI GATC 3 cut(s) 226, 661, 788
Sau96I GGNCC 1 cut(s) 514
ScaI AGTACT 1 cut(s) 652
SchI GAGTC 2 cut(s) 572, 1034
ScrFI CCNGG 3 cut(s) 95, 517, 1079
SduI GDGCHC 2 cut(s) 95, 1059
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 2 cut(s) 282, 312
SmiMI CAYNNNNRTG 3 cut(s) 33, 1064, 1096
SmlI CTYRAG 2 cut(s) 437, 556
SmoI CTYRAG 2 cut(s) 437, 556
Sse9I AATT 3 cut(s) 483, 490, 838
SsiI CCGC 4 cut(s) 56, 156, 276, 357
SspI AATATT 1 cut(s) 213
SspMI CTAG 3 cut(s) 125, 633, 858
StyD4I CCNGG 3 cut(s) 93, 515, 1077
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 2 cut(s) 202, 948
TaqI TCGA 3 cut(s) 711, 787, 877
TasI AATT 3 cut(s) 483, 490, 838
TatI WGTACW 3 cut(s) 465, 650, 738
TauI GCSGC 2 cut(s) 278, 359
TfiI GAWTC 3 cut(s) 552, 815, 931
Tru1I TTAA 5 cut(s) 204, 288, 438, 537, 902
Tru9I TTAA 5 cut(s) 204, 288, 438, 537, 902
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 587
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 5 cut(s) 102, 159, 411, 519, 992
TspRI CASTG 1 cut(s) 354
Vha464I CTTAAG 1 cut(s) 437
VspI ATTAAT 1 cut(s) 537
XceI RCATGY 3 cut(s) 449, 739, 1101
XcmI CCANNNNNNNNNTGG 1 cut(s) 943
XspI CTAG 3 cut(s) 125, 633, 858
ZrmI AGTACT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.